LOC103032173


Basic Information

Item Value
gene id LOC103032173
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15032389 ~ 15035954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255159.3
actgaacataaattaaCACAATTGATTATCAGACGGAAGAGGGGAAATAGTGAGTTTCATCATCGTGAATGACATCAGGGAGTTTCCGCTTCACAGCATGGTTACTTAAAAAGCACTACTCCTCAAAGTCGGCAGCCAGTATCTCCTCTGTTCACTGAAACTGTCACAAGGCAGCCAAGCTAATATGCACCTCTTTCTCGGACTCCCCCTGACTCTATGTGCCTTGAGCCTTGTGAGCCCTGCACCCACGCCGGCAATGTGGAGAGACATGCAGAATCCTGCCTTCGAGAACGCTCTGGAAAACGGGCACAGCCTTATCAGCAAGATCCTCAACGACACTCCTGCAGCGCACAAGGCTTGGATCCATACTGAGagtctgTCTCTGGACGGCAATGACTCAGGCAAACTCCAGTACCTGAAGGAGGTCCTCAATTTAACCACAGCACCAGCTCTCAAACCCATCTCGGACAGCTTAAACCTGGGCGATTGCTTGGGTCAGATAGCTGAAGGTCTCAGGTTACACCAAACTTTGCTGACAGTGGTCAGCAACCTGGCGCTCGTCAAGCCTGAGGAGGTGGATGGACTTCTGTACGACATCCGAGATCTTCTAATACAGGTCAAAAAGATGCAGAGCCAGACAGGAGTGACAAGCGCCCCAGAAACCCAGGAAGACCTGAAGAGTCAGTTGCAGAAGAACCTCGCTCCTCAACTAGAAGATGAATATACGTCACAGGTAGCAGCACACCTGGTCCTGCTCCACCTGCGGGATTTCAGCCAGGACGTCAGCCGAAGCTTCCGGAGCATGCACTCGATCTTATTTCCTGACTCGGACAGCCAGACGACGGTGGCACTGAACTGATTGGTCGAGCTTATTAGGGGCTGCAGGAAAAGGACAGTTGTAAAGGGATGTAAAGGGGACGCCGCCTTATTCACCGTTAGCAACATCGGTACAACACCGCATCTTGTGTCTTGTTTACTTTTATACgtaacatttttttcacataCAAACCGAGAACCACGTTagaagaaacacttttttttttcttttgatgttTACTCAAACTGAGAAAAAATGCATGACCCGTAACGCAACTGTGAGcagtagaaacaaacacaaatgcCTCACAGTCATTTGAACACCATTCTGATCTCTCCAAGTGAagaaacccactgtgtgttgtGTCTTATCATGTGATGAAAGTGTGATGAATgtaaggatgatgatgatgatgagtgtTTTCCAGGCCAgcctttctatttttttcttccctttttttcttctcatacCCACAAGTTCCTGCCCCTTCTTGATCATCTGAATCAGGCGCACTACGTATTTATTGATGCAATGAAATTTTGGTACATtggtatttattattaagttatttatttgtatttatttttttatttattgtattattattatgaagatgatgatgttaCAATTAATGTTAATGCCATGactatttatcatgttttatttttattatcaccGTTTGACTTCTGAGTCATTTCGTGAGTTGCTGCTGTGTCACTTCCTAAACGTTCTATTTATGAGAACACTCCTTGCGCAACATTATCTTATGTTAGGAAGTTTAGTTTCTGAGGAAATGCACACAGCGGTTTTAttgatcatatatatataacattttttttaatgttatatgtTTATTGAAAAACAATTGTAGCGCTGTATCGTAGTGCATcatattgtatgttttatttttataacaaaaacaaataaatgccaaacactttttaaaaacccAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255159.3 True 1770 mRNA 0.42 5 15032389 15035954

Neighbor

gene id symbol gene type direction distance location
LOC103032486 lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 41090 14967880 ~ 14991299 (+)
get4 get4 coding upstream 198042 14823653 ~ 14834347 (+)
LOC103041718 LOC108435036 coding upstream 210226 14798910 ~ 14822163 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding upstream 257192 14720879 ~ 14775197 (+)
LOC103046321 plekha1 coding upstream 329890 14651650 ~ 14702499 (+)
top2a top2a coding downstream 80870 15116824 ~ 15133253 (+)
gjd3 gjd3 coding downstream 98348 15134302 ~ 15135903 (+)
LOC103030376 raraa,rara,LOC108410801,LOC107678286,LOC107745620,LOC107716487 coding downstream 188498 15224452 ~ 15383888 (+)
LOC103029630 NA coding downstream 357061 15393015 ~ 15406356 (+)
LOC103029312 NA coding downstream 371531 15407485 ~ 15423095 (+)
G36442 LOC103041415 non-coding upstream 238053 14793471 ~ 14794336 (+)
G36437 NA non-coding upstream 245088 14786050 ~ 14787301 (+)
LOC111192375 NA non-coding upstream 413755 14616723 ~ 14618634 (+)
G36382 LOC108435041,LOC107716480,LOC107660482,LOC107745560 non-coding upstream 442601 14580534 ~ 14589788 (+)
G36372 NA non-coding upstream 553067 14478818 ~ 14479322 (+)
G36499 NA non-coding downstream 1824 15037778 ~ 15037977 (+)
G36503 med24,LOC107716488,LOC107598039,LOC107706820,LOC107678252,LOC107560528 non-coding downstream 17088 15053042 ~ 15064113 (+)
G36510 med24,LOC107716488,LOC107660474 non-coding downstream 41830 15077784 ~ 15081345 (+)
G36511 med24,LOC107598039,LOC107660474 non-coding downstream 45610 15081564 ~ 15083940 (+)
G36512 NA non-coding downstream 50402 15086356 ~ 15090376 (+)
G36439 LOC103041415 other upstream 241556 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 464477 14564925 ~ 14567912 (+)
G36371 NA other upstream 568750 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 1511687 13502246 ~ 13520702 (+)
G35995 NA other upstream 2329333 12702305 ~ 12703056 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 396875 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 1177836 16213790 ~ 16233839 (+)
sun1 NA other downstream 1964428 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 2165543 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 2196866 17232820 ~ 17234559 (+)

Expression


Co-expression Network