wdr45b (wdr45b,LOC107598578)


Basic Information

Item Value
gene id wdr45b
gene name wdr45b,LOC107598578
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1129955 ~ 1138168 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257194.3
TTATTCCTGGTGCGCTGTGGGAAAGGAGGGACCGCAGGAACGCCAGCGCAGATTTCCTGACTGAACACCAGCAGTAGCGGTACGGAGCCCTGCCGAGCCCTGTAGCGAGTCTCTGGAAACCAGCGAGAGGAATGGTGTCTTTCGGTTAAAAGCAACCGGGTGTTTCTGACCTTCGGCTGGTTAAATAACTTAGACACACACCATGAATTTACTGCCGTCCAACCCGCACGGAAACGGGCTACTTTACGCTGGATTTAACCAGGATCACGgaTGCTTTGCGTGTGGAATGGAAAACGGATTCAGAGTGTACAACACAGATCCtcttaaagaaaaagaaaagcaagAGTTTCTGGAAGGTGGGGTTGGGCATGTGGAGATGCTCTTTCGATGCAACTACCTTGCACTTGTTGGCGGAGGCAAGAAGCCCAAATACCCACCTAATAAAGTCATGATTTGGGATGACCTCAAGAAAAAGACTGTGATTGAGATTGAATTTTCTACAGAAGTCAAAGCTGTAAAGCTACGACGAGACAGaATTGTGGTGGTCCTGGACTCCATGATCAAAGTATTTACTTTCACGCATAATCCTCACCAGCTGCATGTATTTGAAACATGCTACAACCCCAAAGGTCTTTGTGTGCTGTGTCCGAATAGCAACAACTCCCTTCTTGCATTTCCTGGCACGCACTCTGGGCACGTGCAGATAGTAGACCTGGCCAACACAGAGAGACCTCCGGTTGACATTCCAGCCCATGAGGGAGCTCTTTGCTGCATTGCTCTAAATCTCCAGGGGACAAGAATAGCCACAGCTTCAGAAAAAGGAACTCTGATCAGAATATTCGACACCTCAGCAGGTCATCTGATACAGGAGTTAAGACGAGGGTCACAAACTGCAAACATATATTGCATCAATTTCAACCAGGATGCATCTCTCATCTGTGTGTCAAGTGACCATGGTACTGTCCACATATTTGCTGCAGAAGATCCAAAAAGGAACAAGCAGTCAAGcttGGCATCAGCCAGTTTTCTCCCCAAATATTTCAGCTCCAAATGGAGCTTCTCTAAGTTCCAGGTCCCGTCTGGCTCGCCCTGCGTCTGTGCCTTTGGAACTGAGCCCAATGCAGTCATAGCCATTTGTGCTGATGGCAGCTACTACAAGTTCCTGTTCAACCAAAAAGGGGAGTGTTCAAGGGATGTATACGCCCAGTTTTTGGAAATGACTGATGAGAAGATATAAGCACAGATTCTACTTGGATTTACGTCCTTTACACTGCTGACATCTTCACGTTTGCAGAATGTCAGTGGTCCCACTCTACGTGGCATTTGTGACTCCATGTCACTTAAGGGAGATGAACCATATCAGAGACTCCCTGGTGAGAAATGAAAAGGAAAGACTGAGATCTGTttctgttctttgttttttttgtactctAAATAACACAAAAAGACTCTGGCCAAGCAGAGAGTTGGACAGACAAACTGACTGCAGGCGACTCATCTAGTGAAGTGAGAAGAGGGaaactttattttttgaatGGACAACagttgctttttaaaaggtcttCCATAGGTcttttgttcgttttttttttttttttttttcctttttttttatgtagagtTGGCTAGTTGGATCTTTGTCTACTAACACCACCTAACCTAACGTAGGGAGTGCCTCTGTCATTAATGAAGAGGAGTGATGAGTGTCCATGTATTCATCATTCACAACTAATATGTATGTACAAAAAATGAGTAGCGTTAGATTTTACTactataaacacaaaatgccaGACAGAACGTATGTAACTACATAGACTCAACATGTATAGACTAGTGCAAGGGAAAAAAGACAACTAAGATGTAGAtgtgtttttccattttaagTTACTTACATGtatgtgcaatatttttttttcattcagttgTTGGGAGTTAATCTGTTTAATTGAAGCAAATTAGTATTTGATAAATGCATTGTAATATGTGCATAGCTATTGTGTGCTCAGTACAGTCACGATATTCTTATGTTATTGGGGGAGTGGAGCACTTCATTAAAACAGAATTTGATGTAAAATGCTGTTAGGAGGGTCCCCAGTTGTAACATGACTACACAGAGTTCCATGTTAATTTGGTTATACAGACTCATGCATGCAACATTCCctttatttaagatttaatgTCAGGACTTTTGAAAGGCCAATACCACTTGCACAGTGGATCtatttttacagaaatgtaAGGAATATTACCTTATTTCCATAAAAGAATGAATATGTTGTGTGATATTAGTGGTAGCAAATTCATTACATGAAGGCAATCTtacaaatgtttgtaaaagaaAGTTCTTCAGCAGAAACAATACCAAAGTGCCCAATTATAACCCAATTCTATTTATGCTTGAACTGTATTCATCGTTCTTAATCGTTTCTCTGTATtatgtcatttattttcttttttttttcaagctgtTATGTTGATTATGTTGAAGTTGTTTCATGCTTTTGTCGTGATTGTAAAACGTAGACGTGATTACATATAATGCAATGTTTCCGTATAATGATGTAATATTGATGTACGCTAGGACTGTGAGCTCTGCAGGGATACAGCACACAATTTACCATGTGACAAATTAAACCCAATTGTGAAATCACAATCACAATGTGTTAatgaa
>XM_015607862.2
GGTTGATTATTATTCCTGGTGCGCTGTGGGAAAGGAGGGACCGCAGGAACGCCAGCGCAGATTTCCTGACTGAACACCAGCAGTAGCGGTACGGAGCCCTGCCGAGCCCTGTAGCGAGTCTCTGGAAACCAGCGAGAGGAATGGTGTCTTTCGGTTAAAAGCAACCGGGTGTTTCTGACCTTCGGCTGGTTAAATAACTTAGACACACACCATGAATTTACTGCCGTCCAACCCGCACGGAAACGGGCTACTTTACGCTGGATTTAACCAGGATCACGgaTGCTTTGCGTGTGGAATGGAAAACGGATTCAGAGTGTACAACACAGATCCtcttaaagaaaaagaaaagcaagAGTTTCTGGAAGGTGGGGTTGGGCATGTGGAGATGCTCTTTCGATGCAACTACCTTGCACTTGTTGGCGGAGGCAAGAAGCCCAAATACCCACCTAATAAAGTTGGAACATCATGCATCTTCCATGTTTTGCAAGTCATGATTTGGGATGACCTCAAGAAAAAGACTGTGATTGAGATTGAATTTTCTACAGAAGTCAAAGCTGTAAAGCTACGACGAGACAGaATTGTGGTGGTCCTGGACTCCATGATCAAAGTATTTACTTTCACGCATAATCCTCACCAGCTGCATGTATTTGAAACATGCTACAACCCCAAAGGTCTTTGTGTGCTGTGTCCGAATAGCAACAACTCCCTTCTTGCATTTCCTGGCACGCACTCTGGGCACGTGCAGATAGTAGACCTGGCCAACACAGAGAGACCTCCGGTTGACATTCCAGCCCATGAGGGAGCTCTTTGCTGCATTGCTCTAAATCTCCAGGGGACAAGAATAGCCACAGCTTCAGAAAAAGGAACTCTGATCAGAATATTCGACACCTCAGCAGGTCATCTGATACAGGAGTTAAGACGAGGGTCACAAACTGCAAACATATATTGCATCAATTTCAACCAGGATGCATCTCTCATCTGTGTGTCAAGTGACCATGGTACTGTCCACATATTTGCTGCAGAAGATCCAAAAAGGAACAAGCAGTCAAGcttGGCATCAGCCAGTTTTCTCCCCAAATATTTCAGCTCCAAATGGAGCTTCTCTAAGTTCCAGGTCCCGTCTGGCTCGCCCTGCGTCTGTGCCTTTGGAACTGAGCCCAATGCAGTCATAGCCATTTGTGCTGATGGCAGCTACTACAAGTTCCTGTTCAACCAAAAAGGGGAGTGTTCAAGGGATGTATACGCCCAGTTTTTGGAAATGACTGATGAGAAGATATAAGCACAGATTCTACTTGGATTTACGTCCTTTACACTGCTGACATCTTCACGTTTGCAGAATGTCAGTGGTCCCACTCTACGTGGCATTTGTGACTCCATGTCACTTAAGGGAGATGAACCATATCAGAGACTCCCTGGTGAGAAATGAAAAGGAAAGACTGAGATCTGTttctgttctttgttttttttgtactctAAATAACACAAAAAGACTCTGGCCAAGCAGAGAGTTGGACAGACAAACTGACTGCAGGCGACTCATCTAGTGAAGTGAGAAGAGGGaaactttattttttgaatGGACAACagttgctttttaaaaggtcttCCATAGGTcttttgttcgttttttttttttttttttttcctttttttttatgtagagtTGGCTAGTTGGATCTTTGTCTACTAACACCACCTAACCTAACGTAGGGAGTGCCTCTGTCATTAATGAAGAGGAGTGATGAGTGTCCATGTATTCATCATTCACAACTAATATGTATGTACAAAAAATGAGTAGCGTTAGATTTTACTactataaacacaaaatgccaGACAGAACGTATGTAACTACATAGACTCAACATGTATAGACTAGTGCAAGGGAAAAAAGACAACTAAGATGTAGAtgtgtttttccattttaagTTACTTACATGtatgtgcaatatttttttttcattcagttgTTGGGAGTTAATCTGTTTAATTGAAGCAAATTAGTATTTGATAAATGCATTGTAATATGTGCATAGCTATTGTGTGCTCAGTACAGTCACGATATTCTTATGTTATTGGGGGAGTGGAGCACTTCATTAAAACAGAATTTGATGTAAAATGCTGTTAGGAGGGTCCCCAGTTGTAACATGACTACACAGAGTTCCATGTTAATTTGGTTATACAGACTCATGCATGCAACATTCCctttatttaagatttaatgTCAGGACTTTTGAAAGGCCAATACCACTTGCACAGTGGATCtatttttacagaaatgtaAGGAATATTACCTTATTTCCATAAAAGAATGAATATGTTGTGTGATATTAGTGGTAGCAAATTCATTACATGAAGGCAATCTtacaaatgtttgtaaaagaaAGTTCTTCAGCAGAAACAATACCAAAGTGCCCAATTATAACCCAATTCTATTTATGCTTGAACTGTATTCATCGTTCTTAATCGTTTCTCTGTATtatgtcatttattttcttttttttttcaagctgtTATGTTGATTATGTTGAAGTTGTTTCATGCTTTTGTCGTGATTGTAAAACGTAGACGTGATTACATATAATGCAATGTTTCCGTATAATGATGTAATATTGATGTACGCTAGGACTGTGAGCTCTGCAGGGATACAGCACACAATTTACCATGTGACAAATTAAACCCAATTGTGAAATCACAATCACAATGTGTTAatgaa

Function

symbol description
wdr45b Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy. Predicted to be located in lysosome and phagophore assembly site. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Orthologous to human WDR45B (WD repeat domain 45B).

NR:

description
WD repeat domain phosphoinositide-interacting protein 3

GO: NA

KEGG:

id description
K22991 WDR45, WIPI4, WIPI3; WD repeat-containing protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257194.3 False 2671 mRNA 0.41 10 1129964 1138168
XM_015607862.2 True 2713 mRNA 0.41 10 1129955 1138168

Neighbor

gene id symbol gene type direction distance location
trnam-cau_18 NA coding upstream 8083 1121801 ~ 1121872 (+)
trnar-ucg NA coding upstream 8487 1121396 ~ 1121468 (+)
LOC103037439 LOC108424843 coding upstream 9325 1114588 ~ 1120630 (+)
LOC103026642 LOC108424836 coding upstream 156473 970636 ~ 973482 (+)
trnac-gca_9 NA coding upstream 248517 881367 ~ 881438 (+)
foxk2 foxk2,LOC107719587 coding downstream 271 1138439 ~ 1156171 (+)
LOC103039538 LOC108424875 coding downstream 122482 1260650 ~ 1366518 (+)
myocd myocd coding downstream 460772 1598940 ~ 1721902 (+)
LOC103043447 LOC101477534,LOC105888841,LOC102192639,LOC100710639,LOC102295130,LOC103368359 coding downstream 621440 1759608 ~ 1782752 (+)
LOC111192346 gas7 coding downstream 646270 1784438 ~ 1799673 (+)
LOC111192341 NA non-coding upstream 83452 1039042 ~ 1046503 (+)
G33454 NA non-coding upstream 138861 988920 ~ 991094 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding upstream 185486 858648 ~ 944469 (+)
G33426 NA non-coding upstream 208397 912388 ~ 921558 (+)
G33329 NA non-coding upstream 517844 606044 ~ 612111 (+)
LOC111192399 NA non-coding downstream 46897 1185065 ~ 1221130 (+)
G33511 NA non-coding downstream 205242 1343410 ~ 1344921 (+)
LOC111192343 NA non-coding downstream 409507 1547675 ~ 1557290 (+)
G33609 NA non-coding downstream 589953 1728121 ~ 1731958 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding downstream 594758 1732926 ~ 1735977 (+)
trnal-aag NA other upstream 137437 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 144574 983167 ~ 985381 (+)
LOC111192417 NA other upstream 705484 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 898038 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 963565 128356 ~ 166390 (+)
LOC111192342 dnah9 other downstream 231005 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 912574 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2425862 3564030 ~ 3659132 (+)
G34309 NA other downstream 3032883 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 3744388 4882556 ~ 4924766 (+)

Expression


Co-expression Network