G51470


Basic Information

Item Value
gene id G51470
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2822962 ~ 2823706 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58644
ATTAAGGCGAGACACTACAGGTGAATAGGGATTTTTTTTAAATTAGAAGATATCACTGTGAAACTTCTTCAGTTTATTACTGGCATAAACATAAGAAAAAAATGTATTACAAGTTTTGAATAAATGTATGTTTTAATATGCAAATGAGGCCTTATATACTTAAATATATGCTAATTTGCATACATTTCCAAAAACAAAATCTGGAAATTGGAAAGGTCCAGGTTTAAAATTCTTGGTTCTATTTGTTGACATATTAGATGAAAGGGCTTTTACAGAGGGGATTCTGGATATCTTATTTTGTGCTTTAGTAAATTAGAGAATACTGACAATAGCCTTAAAAAATCTATTTTCGCCATGTTTTTTTGAGTAAAAGGACCTATAACTCAGGATAGGAATGATAAATCAACAAATCCCTCTGTAAAAGCCTTCAGAATATAGATAGGAATAAAACTGTAAAGTTTGGTGTATATAAGTTCTGCTGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58644 True 484 lncRNA 0.37 2 2822962 2823706

Neighbor

gene id symbol gene type direction distance location
CI01000009_02713403_02713914 NA coding upstream 108964 2712958 ~ 2713998 (+)
CI01000009_02674026_02678655 NA coding upstream 144216 2673802 ~ 2678746 (+)
CI01000009_02667840_02668883 NA coding upstream 153798 2667442 ~ 2669164 (+)
CI01000009_02656782_02657768 NA coding upstream 165139 2656557 ~ 2657823 (+)
CI01000009_02615073_02617401 NYX coding upstream 204767 2614656 ~ 2618195 (+)
CI01000009_02918681_02973307 KDM6A coding downstream 94975 2918681 ~ 2973952 (+)
CI01000009_03123137_03137452 CCDC80 coding downstream 298410 3122116 ~ 3138311 (+)
CI01000009_03145417_03159851 F5 coding downstream 321711 3145417 ~ 3159914 (+)
CI01000009_03164135_03169470 GPR161 coding downstream 338612 3162318 ~ 3170140 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding downstream 378501 3202207 ~ 3208984 (+)
G51394 NA non-coding upstream 189100 2631777 ~ 2633862 (+)
G51384 NA non-coding upstream 201775 2554739 ~ 2621187 (+)
G51368 NA non-coding upstream 394640 2428122 ~ 2428322 (+)
G51354 NA non-coding upstream 397679 2415700 ~ 2425283 (+)
G51272 NA non-coding upstream 421595 2401033 ~ 2401367 (+)
G51388 NA non-coding downstream 16704 2840410 ~ 2844319 (+)
G51495 NA non-coding downstream 77768 2901474 ~ 2901723 (+)
G51496 NA non-coding downstream 78241 2901947 ~ 2902312 (+)
G51500 NA non-coding downstream 83660 2907366 ~ 2907596 (+)
G51501 NA non-coding downstream 85866 2909572 ~ 2909938 (+)
G51274 NA other upstream 472476 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 921536 1897343 ~ 1919516 (+)
G51122 NA other upstream 1140996 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1384607 1429873 ~ 1435328 (+)
G50920 NA other upstream 2052729 769841 ~ 770233 (+)
G51529 NA other downstream 238327 3062033 ~ 3062587 (+)
G53388 NA other downstream 2698536 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3036596 5931718 ~ 5943899 (+)
G53651 NA other downstream 3421858 6245564 ~ 6248392 (+)

Expression


Co-expression Network