LOC103043879


Basic Information

Item Value
gene id LOC103043879
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1807011 ~ 1814314 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259075.3
GTCTCATGTTGTGAGTCGGAGCGCTCAGGGAGTAGTGCTGAACGTTGAGTTACTCGGTTTGCCGTTTGAGTTGGGAAAAACGTGACCATCTCAACATACAATTAATATCTGATTGGCAGTTCTGTTAAAGGGAAATCGAATGGCTTCTGAAGATATTGCCCAGCTTACAGAGGCGCTGGCCAAAACTCATGTTGGAGAAGAGCTAAGCTACAAAGGTCAGGGGCTAAAGCTGGATGATGAGCAATCAGTGGAAAAGATAGTCAGAGAGATTGACCAGTTCAGGGGTCTAAGGGCATTGAGACTGGAAGGAAATACTATTGGGGTTGAAGCAGCACATGCCATAGCAAAAGCTCTTGAGACCCACAATGAACTTGAGtGCTGTCACTGGAGTGACATGTTTACGGGTCGCCTTCGTTCTGAAATCCCTCCTGCCTTGAAATCTCTGGGAAGTGCATTAATAACCTCAGGTGCCAGGCTTACTGAGCTGGACTTGAGTGACAATGCTTTTGGTCCAGATGGTGTAAAGGGCATTGAAACCCTCCTGAAGAGCCCTGTGTGCCATACACTAAAAGAACTCAGGCTCAACAACTGTGGCATGGGCATTGGAGGGGGAATTATCCTGGCTTCTGCATTGACTGAGTGCTATAAACAGTCAAGTGCTATGGGCTCACCACTGAAGCTGAAGGTTTTCATAGCTGGACGTAATCGCCTGGAAAACGATGGCGCCACTGCTCTAGCCCGTGCATTTCAGATGATTGGTAGTCTTGAGGAGGTCCACATGCCACAGAATGGGATCAATCATCCTGGCATCACAGCTTTGGCCACCGCAATGCAACACAATCCCAATCTTCGTGTTCTAAACCTCAATGACAATACTTTCACCAAGAGAGGAGCGGTTGCCATGGCTCAGGCCCTTAAGCACCTACGCAGCATTCAGGTTGTTAATTTTGGTGACTGTCTGGTACGTACTGAAGGCGCCATTGCTATAGCGGCAGCCCTAAGAGAAGGATTGACTGTTATTAAGGAGCTAAATCTGTCTTTTGGGGAAATTACTGAAGCTGCAGCGTTGGTACTTGCAAGGGCATTAAAGGACAAACCTGATTTGAAGAAGTTAGACCTCAATGGAAACTGCCTGGGGGAGTATGGCTGTGAAGCTCTCAAAGAGGCTATGGAAAGTGTGGACAAGTCAGATGTGCTTGGTTCACTCAGTGATGATGAAGGAGAACcagatgaagaagaggaggaggatgatgaagatAGTGGTGCagaggatgaggatgatgaggaggaggaggaggaggaagagcacAACTGTGTTAATGGGACTAAGGAAAATGGAAAAGATAAGGGAAGCCCAGCAAAGACAAACCTCTGCAGTCCCGACCTCATATCCTTCTTTCATTCACCAACATCAGAGAAATTGTTCAACCTTGGAGCCAAGAGAACTCAGCTTATTGAGCAGCAGCTTGATTTTTCAGATGCTGCCAAAATTGCAGATTTTTTCCTTCAGATCTGTTCAGTGTATGAAGAAGAGGTGGAGGTGAAGCAAGTCGTTTTAGAAACTGCTGATACTCTGTTGAGGAAAGGCTTTTCCAGTCCTCACTTTCAGACTTACCTTTTTATCTCCTCACTGATGGTGAACATGGGGCTTTTAAAGggTGAAAAGAAAACGAAGAAGATGGGTGTTTTGCCTGGTCACCTCATTGTTTTGAATCACTGTGTTGGACAGGACTACTTTCCTGTGGACCAGGCTGATGTTCTGCTGATCTTTTTGTCCCGAAATGGCAAAGTCCTGGAGTCTTGTTCCAAGGCAAGAGATTACCTTAAAACCACACTGGAGAAGAAGATTGCTGCTTAATACTCTGTGCTGTCACTGGAAACACCAAATATGGGTCAAAGACATCGGCCAGATCCTGAAATGCTTAATTGGAAAGGATATTTCAATCTATAATTGTCAGTGGTTAACTTACCATTCAGTTAACTCTTACTGGGATTTTTTTGGAGAGCTGTAATGAAAAGGACCTTAAGTTCTGACATGTATATTAGTGCCTCTTAAGTACCAGACAGattgaaggtaaaaaaaatagcctGGGAATAGTCTTTTGTACTTTACAACTCTTTCATACATACTTTCAGTATGGCATAAAAGCTATTTTCTTTACCTCTTCTTAAGTCTGATTCATATGGCTACAACCCTTGAAACTATAACATatcaaaattaagtaaattgaaAGAATTGTTCTGCTATATTATCAGTAATAGTTGAATGACACAACAAAACTGCCTTTAAAGCTTTATTTGGGAAAGCTTCAGTTTGCCCATGCACACAAGTAGataatttttttagtgtttttttcatagttgaACTGTTCAGGGAACAGCTGGTAAAAGGGAACATGATAAAATGTAGTATGTGCTCTCAACTGTACAGTTGTGTTCAGTGCATTCCattgtatttgaaataaagtgattatttttgtgaaaggagA
>XM_022668881.1
TTCATGTCTGCCTCCATGCGTCTCATGTTGCAGTTCTGTTAAAGGGAAATCGAATGGCTTCTGAAGATATTGCCCAGCTTACAGAGGCGCTGGCCAAAACTCATGTTGGAGAAGAGCTAAGCTACAAAGGTCAGGGGCTAAAGCTGGATGATGAGCAATCAGTGGAAAAGATAGTCAGAGAGATTGACCAGTTCAGGGGTCTAAGGGCATTGAGACTGGAAGGAAATACTATTGGGGTTGAAGCAGCACATGCCATAGCAAAAGCTCTTGAGACCCACAATGAACTTGAGtGCTGTCACTGGAGTGACATGTTTACGGGTCGCCTTCGTTCTGAAATCCCTCCTGCCTTGAAATCTCTGGGAAGTGCATTAATAACCTCAGGTGCCAGGCTTACTGAGCTGGACTTGAGTGACAATGCTTTTGGTCCAGATGGTGTAAAGGGCATTGAAACCCTCCTGAAGAGCCCTGTGTGCCATACACTAAAAGAACTCAGGCTCAACAACTGTGGCATGGGCATTGGAGGGGGAATTATCCTGGCTTCTGCATTGACTGAGTGCTATAAACAGTCAAGTGCTATGGGCTCACCACTGAAGCTGAAGGTTTTCATAGCTGGACGTAATCGCCTGGAAAACGATGGCGCCACTGCTCTAGCCCGTGCATTTCAGATGATTGGTAGTCTTGAGGAGGTCCACATGCCACAGAATGGGATCAATCATCCTGGCATCACAGCTTTGGCCACCGCAATGCAACACAATCCCAATCTTCGTGTTCTAAACCTCAATGACAATACTTTCACCAAGAGAGGAGCGGTTGCCATGGCTCAGGCCCTTAAGCACCTACGCAGCATTCAGGTTGTTAATTTTGGTGACTGTCTGGTACGTACTGAAGGCGCCATTGCTATAGCGGCAGCCCTAAGAGAAGGATTGACTGTTATTAAGGAGCTAAATCTGTCTTTTGGGGAAATTACTGAAGCTGCAGCGTTGGTACTTGCAAGGGCATTAAAGGACAAACCTGATTTGAAGAAGTTAGACCTCAATGGAAACTGCCTGGGGGAGTATGGCTGTGAAGCTCTCAAAGAGGCTATGGAAAGTGTGGACAAGTCAGATGTGCTTGGTTCACTCAGTGATGATGAAGGAGAACcagatgaagaagaggaggaggatgatgaagatAGTGGTGCagaggatgaggatgatgaggaggaggaggaggaggaagagcacAACTGTGTTAATGGGACTAAGGAAAATGGAAAAGATAAGGGAAGCCCAGCAAAGACAAACCTCTGCAGTCCCGACCTCATATCCTTCTTTCATTCACCAACATCAGAGAAATTGTTCAACCTTGGAGCCAAGAGAACTCAGCTTATTGAGCAGCAGCTTGATTTTTCAGATGCTGCCAAAATTGCAGATTTTTTCCTTCAGATCTGTTCAGTGTATGAAGAAGAGGTGGAGGTGAAGCAAGTCGTTTTAGAAACTGCTGATACTCTGTTGAGGAAAGGCTTTTCCAGTCCTCACTTTCAGACTTACCTTTTTATCTCCTCACTGATGGTGAACATGGGGCTTTTAAAGggTGAAAAGAAAACGAAGAAGATGGGTGTTTTGCCTGGTCACCTCATTGTTTTGAATCACTGTGTTGGACAGGACTACTTTCCTGTGGACCAGGCTGATGTTCTGCTGATCTTTTTGTCCCGAAATGGCAAAGTCCTGGAGTCTTGTTCCAAGGCAAGAGATTACCTTAAAACCACACTGGAGAAGAAGATTGCTGCTTAATACTCTGTGCTGTCACTGGAAACACCAAATATGGGTCAAAGACATCGGCCAGATCCTGAAATGCTTAATTGGAAAGGATATTTCAATCTATAATTGTCAGTGGTTAACTTACCATTCAGTTAACTCTTACTGGGATTTTTTTGGAGAGCTGTAATGAAAAGGACCTTAAGTTCTGACATGTATATTAGTGCCTCTTAAGTACCAGACAGattgaaggtaaaaaaaatagcctGGGAATAGTCTTTTGTACTTTACAACTCTTTCATACATACTTTCAGTATGGCATAAAAGCTATTTTCTTTACCTCTTCTTAAGTCTGATTCATATGGCTACAACCCTTGAAACTATAAC

Function

GO:      GO:0005098,GO:0032853

KEGG:

id description
K14319 RANGAP1; Ran GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259075.3 True 2489 mRNA 0.43 16 1807030 1814314
XM_022668881.1 False 2123 mRNA 0.45 16 1807011 1814034

Neighbor

gene id symbol gene type direction distance location
LOC111192346 gas7 coding upstream 7338 1784438 ~ 1799673 (+)
LOC103043447 LOC101477534,LOC105888841,LOC102192639,LOC100710639,LOC102295130,LOC103368359 coding upstream 24259 1759608 ~ 1782752 (+)
myocd myocd coding upstream 85109 1598940 ~ 1721902 (+)
LOC103039538 LOC108424875 coding upstream 440493 1260650 ~ 1366518 (+)
foxk2 foxk2,LOC107719587 coding upstream 650840 1138439 ~ 1156171 (+)
LOC103042228 chadl,LOC108413512 coding downstream 1924 1816238 ~ 1827981 (+)
trnaq-cug_1 NA coding downstream 23191 1837505 ~ 1837576 (+)
LOC103044365 LOC108273944,LOC108413510 coding downstream 31889 1846203 ~ 1868651 (+)
LOC103046730 desi1 coding downstream 90719 1905033 ~ 1909731 (+)
LOC103047034 shisa8 coding downstream 115854 1930168 ~ 1967340 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding upstream 71034 1732926 ~ 1735977 (+)
G33609 NA non-coding upstream 75053 1728121 ~ 1731958 (+)
LOC111192343 NA non-coding upstream 249721 1547675 ~ 1557290 (+)
G33511 NA non-coding upstream 462090 1343410 ~ 1344921 (+)
LOC111192399 NA non-coding upstream 585881 1185065 ~ 1221130 (+)
G33623 NA non-coding downstream 54616 1868930 ~ 1871903 (+)
G33737 NA non-coding downstream 214019 2028333 ~ 2030101 (+)
G33747 NA non-coding downstream 271329 2085643 ~ 2087531 (+)
G33748 NA non-coding downstream 273645 2087959 ~ 2088160 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding downstream 303253 2117567 ~ 2119530 (+)
LOC111192342 dnah9 other upstream 418992 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 814493 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 821630 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1382540 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 1575094 181069 ~ 231917 (+)
amz2 amz2 other downstream 236428 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1749716 3564030 ~ 3659132 (+)
G34309 NA other downstream 2356737 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 3068242 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3878208 5692522 ~ 5756116 (+)

Expression


Co-expression Network