cbx7 (cbx7,LOC103382143,LOC107554058,LOC107660863,LOC107584093,LOC107709653,LOC106608943)


Basic Information

Item Value
gene id cbx7
gene name cbx7,LOC103382143,LOC107554058,LOC107660863,LOC107584093,LOC107709653,LOC106608943
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1870610 ~ 1878209 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259080.3
CAGCGTGCTGCAGATGTGTCGCAGATTTTAAAAGTCCCTGTAGTCAGAAAGAGCTAGTAGGAGGAAATgtaaagagggaaaaacagaaAAGCTTCCGAAACTGAAGCTGAAAACGAGCCTGCGGAGCTGAGGAGCAGCGTGACCACAGGAGGGGAAGAGCGGCGGACTGTCGAATCCTACAGTTACTTTAGAGGAAGGAGCAGGAGCTTCTAACGCACACGCGCGCGCAGGGCTACTGCGTTATTCCGCTCAGAGCCCATATGGAACTGTCAGCTATCGGGGAACAAGTGTTCGCTGTGGAGTCGATCATAAAGAAGAGAGTGAGGAAGGGGAATGTGGAATATTTACTTAAGTGGAAGGGTTGGCCCCCAAAATACAGCACCTGGGAGCCTGCAGAGCACATCCTAGACCCTCGGCTTGTTCTGGCTTATGAAGAGAAAGAACACCGGGACAGAGCTGTAGGCTGGCGTAAGAGAGGACCCAAACAAAAAAGGCTTCTAGTGCAGAACTTTTATACCATGGACCTCCGCAGCGCTCATAAAGCTGCGGAGAAGTCACCAGAACGTCTGCGGCTCTCTCTTACTCGCTCACTTGATCCACAGATCGAACACGTGCACAAGAGGAAACGGAGAAGCTCCAGAGATCCGTCAGTGGAAGACTGGGAAGGGAGGGATGTagatgatgaggatgaagatgaggTCTATGCTAGAGaagaggagacagagactgacaGGGCCACTCCGAACAgTAATGATGGGACAGAGGGCTGGAATTCAATAACTCCAAAAGCATGTAAGGAATGGAGGCCAGTGTTAGGTCCAGAAGATGTAACTGTGACAGATGTCACCATCAATTCGCTGACGGTTACTTTTAAAGAGGCAGTGGTTGCAAAAGGCTTTTTCAGAAGCTGGGAACTGGAGTTCTAATACTGTACTGAGACTTGGGGAGGAGTGAAGATGGTGTGAGAGGAAGAGTTGGAGAGAGTTGGTGGTACGTGAGAATTTGATCAAATGCACTATGTTGGAATGTTTTGACGTAATTCACTCTACTGCATGGCATTCGTTAACATTTCAAAGTAGATTCATAATTAGCACAGGAAGCAACCTCAGCATGGAGATTAATTATTCATGCTGTCTTTAACTTGCACTGTTGTGTTGTGTCCGCTGAGGAGGACTTCTCTATTTAACAACATAGTTTTAGTCTTCAAAGCCTGTAACAGTGATTACAGTGGAAGTAGAAGAGATAATAAAAGTTGCACTCTAATAGTACTGCTACTTATCTAAATACTGGTAAGTTcaatactattttatttatctatatataatatttttaagcaTAATGTGGCCTCAATGTACACATTTAGACTGACTGTGGGAGACCAAAGTGATTCAGTGTGAatgattcagtgtgttttaattGATATGAAGCTTCAGGTGTATACAGGAACATTATTATGTGCTGTGCATACCCAATGGAATATTAGTGTAATGGTGTATTAGCTGAGTCTGAATCTTTGCCCTATTACCCATATAGTGCACTAATCAAAACATTTTGTTCTTCCATTTTGTAGCTGTGTCTGAGATTAGATGCTGAAATTTAGCATACTGTGACAATCGCGACAGTGCGTTTTAATATAGAGTAAACAAACAGTCCAGGAGCCATTTTACAGAGAGTATGCCCACTTCTTATTTCCACTGTTATATCAGAAAAGACTGCAAAATTCTAGAGAGAGTCCACAAGTAAGAATTGAGTGAATGGGGATGAAAGGAGCTAAATGGATTAACTTAAATTGAAAATAGTGTCTGcttatttttctataattttagaaagtacaataaagtatttacattatatCCAATTTTTGGACAAAAAAGGCTTGTTTGAAGTGAGAAAGTTTAAAAATGATGTCCGCACTTCTGACACATTTGATATTATTCCATTAAACAAGTGCATTTGTTAAGTATAAAAAATGTCAAACATTTtgggggctccgagtggtccagcaggctaagcctTGCCACCataatcaggagattgctggttcgaatcctgttcatgcag
>XM_007259081.3
GCAGCGTGCTGCAGATGTGTCGCAGATTTTAAAAGTCCCTGTAGTCAGAAAGAGCTAGTAGGAGGAAATgtaaagagggaaaaacagaaAAGCTTCCGAAACTGAAGCTGAAAACGAGCCTGCGGAGCTGAGGAGCAGCGTGACCACAGGAGGGGAAGAGCGGCGGACTGTCGAATCCTACAGTTACTTTAGAGGAAGGAGCAGGAGCTTCTAACGCACACGCGCGCGCAGGGCTACTGCGTTATTCCGCTCAGAGCCCATATGGAACTGTCAGCTATCGGGGAACAAGTGTTCGCTGTGGAGTCGATCATAAAGAAGAGAGTGAGGAAGGGGAATGTGGAATATTTACTTAAGTGGAAGGGTTGGCCCCCAAAATACAGCACCTGGGAGCCTGCAGAGCACATCCTAGACCCTCGGCTTGTTCTGGCTTATGAAGAGAAAGAACACCGGGACAGAGCTGTAGGCTGGCGTAAGAGAGGACCCAAACAAAAAAGGCTTCTAGTGCAGATCGAACACGTGCACAAGAGGAAACGGAGAAGCTCCAGAGATCCGTCAGTGGAAGACTGGGAAGGGAGGGATGTagatgatgaggatgaagatgaggTCTATGCTAGAGaagaggagacagagactgacaGGGCCACTCCGAACAgTAATGATGGGACAGAGGGCTGGAATTCAATAACTCCAAAAGCATGTAAGGAATGGAGGCCAGTGTTAGGTCCAGAAGATGTAACTGTGACAGATGTCACCATCAATTCGCTGACGGTTACTTTTAAAGAGGCAGTGGTTGCAAAAGGCTTTTTCAGAAGCTGGGAACTGGAGTTCTAATACTGTACTGAGACTTGGGGAGGAGTGAAGATGGTGTGAGAGGAAGAGTTGGAGAGAGTTGGTGGTACGTGAGAATTTGATCAAATGCACTATGTTGGAATGTTTTGACGTAATTCACTCTACTGCATGGCATTCGTTAACATTTCAAAGTAGATTCATAATTAGCACAGGAAGCAACCTCAGCATGGAGATTAATTATTCATGCTGTCTTTAACTTGCACTGTTGTGTTGTGTCCGCTGAGGAGGACTTCTCTATTTAACAACATAGTTTTAGTCTTCAAAGCCTGTAACAGTGATTACAGTGGAAGTAGAAGAGATAATAAAAGTTGCACTCTAATAGTACTGCTACTTATCTAAATACTGGTAAGTTcaatactattttatttatctatatataatatttttaagcaTAATGTGGCCTCAATGTACACATTTAGACTGACTGTGGGAGACCAAAGTGATTCAGTGTGAatgattcagtgtgttttaattGATATGAAGCTTCAGGTGTATACAGGAACATTATTATGTGCTGTGCATACCCAATGGAATATTAGTGTAATGGTGTATTAGCTGAGTCTGAATCTTTGCCCTATTACCCATATAGTGCACTAATCAAAACATTTTGTTCTTCCATTTTGTAGCTGTGTCTGAGATTAGATGCTGAAATTTAGCATACTGTGACAATCGCGACAGTGCGTTTTAATATAGAGTAAACAAACAGTCCAGGAGCCATTTTACAGAGAGTATGCCCACTTCTTATTTCCACTGTTATATCAGAAAAGACTGCAAAATTCTAGAGAGAGTCCACAAGTAAGAATTGAGTGAATGGGGATGAAAGGAGCTAAATGGATTAACTTAAATTGAAAATAGTGTCTGcttatttttctataattttagaaagtacaataaagtatttacattatatCCAATTTTTGGACAAAAAAGGCTTGTTTGAAGTGAGAAAGTTTAAAAATGATGTCCGCACTTCTGACACATTTGATATTATTCCATTAAACAAGTGCATTTGTTAAGTATAAAAAATGTCAAACATTTtgggggctccgagtggtccagcaggctaagcctTGCCACCataatcaggagattgctggttcgaatcctgttcatgcag

Function

symbol description
cbx7 Predicted to enable chromatin binding activity; methylated histone binding activity; and single-stranded RNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in chromatin; cytosol; and nucleoplasm. Part of PcG protein complex. Implicated in breast cancer; multiple myeloma; and myeloid leukemia. Biomarker of breast carcinoma; carcinoma (multiple); glioblastoma; stomach cancer (multiple); and urinary bladder cancer.

NR:

description
chromobox protein homolog 7 isoform X1

GO: NA

KEGG:

id description
K11454 CBX7; chromobox protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259080.3 True 2061 mRNA 0.42 6 1870610 1878208
XM_007259081.3 False 1966 mRNA 0.42 6 1870610 1878209

Neighbor

gene id symbol gene type direction distance location
LOC103040308 NA coding downstream 33326 1825489 ~ 1837284 (-)
LOC103044468 NA coding downstream 117067 1745216 ~ 1753543 (-)
LOC103043761 NA coding downstream 117096 1749204 ~ 1753514 (-)
LOC103042940 map2k4,LOC108424869,LOC108274195,LOC108433489 coding downstream 129135 1729023 ~ 1741475 (-)
dnah9 dnah9 coding downstream 322858 1378988 ~ 1547752 (-)
josd1 josd1,LOC107660868 coding upstream 1049 1879258 ~ 1889279 (-)
LOC103046112 NA coding upstream 12062 1890271 ~ 1895993 (-)
xrcc6 xrcc6,LOC107709651,LOC107554059 coding upstream 19976 1898185 ~ 1904629 (-)
LOC103047336 LOC108444256 coding upstream 99405 1977614 ~ 2017175 (-)
LOC103022929 slc16a6,LOC108444260 coding upstream 177891 2056100 ~ 2066246 (-)
G33693 LOC108413510,LOC108273944,LOC100698988 non-coding downstream 7098 1862786 ~ 1863512 (-)
G33690 LOC108413510 non-coding downstream 12895 1856968 ~ 1857715 (-)
LOC111192345 NA non-coding downstream 143353 1720811 ~ 1727257 (-)
LOC111192344 NA non-coding downstream 150164 1718648 ~ 1720446 (-)
G33545 NA non-coding downstream 695955 1174440 ~ 1174655 (-)
G33731 NA non-coding upstream 97620 1975829 ~ 1976108 (-)
G33732 NA non-coding upstream 98120 1976329 ~ 1976585 (-)
G33759 NA non-coding upstream 196126 2074335 ~ 2074606 (-)
LOC111192348 NA non-coding upstream 202766 2080975 ~ 2083243 (-)
G33804 LOC108444266 non-coding upstream 250058 2128267 ~ 2130172 (-)
G33675 NA other downstream 57988 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1469298 389434 ~ 401312 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other upstream 143862 2022071 ~ 2042303 (-)
G33823 srcap other upstream 290814 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 316548 2194757 ~ 2196095 (-)
G33904 NA other upstream 425053 2303262 ~ 2309329 (-)
G34046 NA other upstream 1302959 3181168 ~ 3194377 (-)

Expression


Co-expression Network