LOC103046112


Basic Information

Item Value
gene id LOC103046112
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1890271 ~ 1895993 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259083.3
AACATGGAGTGCAAACTAGACAGCCCTTGTTCTGAACTTTCACGATGTGATGGTTTAGAGGTAGATAAAGCTGTTTCAGATTTGTGGATAGACATCAATACAGTGAAGAGTGGCGTTCTggcagtatttttttatctcatCTGCAGACTATTACAAGATTTATTAAGATGGCCAGTTAGTTTCATATTCTCTCTCACAGGACTGTCTTTCCTGTGGAGTCTGCTTGTGCATGTGGCCCGGGGTTTACTAGTCATGTTAAAATGGTCAACACACATATGGAGCTTTGTTGCCGTTCTGCTGTCCATGTTCTCCAAAATCAGCTGGGTACCTGATGCCTTCAGGAGTGTAGCAGgGTCCTTTATAAATGTGAAGCAGTACTGTGAAGGGCTCTCGAAGCGCACTGCCTCCATTTCAGAACATCTTTCCTTAACCACAACTTTAAGACCTCACGTCAGAGACCCTGGGCTTCGGGTAATTGTGCTGGGCCCGAGCAGAGGGATGTGTGGCAGCCTGAGAGACAGCCTTTTGGGTTACAGTGCAGGAGCTCTAGCCCCTGATATCGAGAGCACTACCTGGAGAGCAAAGGTAGACGGGAGAGAAGTGACTGTTGTTGAAACTCCTGATCTCTTTGGTACGTCTCTGAGTGTAAAACTGCAAGCACAAGAAGCCCTACGAAGCCTCCAGCTGACCTCACCTGGTCCTCATGCTCTTCTGCTTGTACTTCCAACAACTTACTTGGATAAGGTTTATCAAAACAGTGCACAGAGCTTCTTCTTAAGGTTGCTTCATTTACTGGGTGAAGAAGCAGCGAAGTATGTGCTGGTGGTTTTCACTTGTGTAAATCTACGGGGGGGCTTCTCCTCTCTGGAGCAGCTTCTGGAAGAAGACTATCTAGGAATAAAGGCCGCTCTGCCTCTGTATGGGGACAGAGTGGATTTGGTTAACATCAGTCCCGGTCGCTCTATAGAAAGCAGGATGGTTGAGGGCAGAAGGCTGCTGGACAGAGTAGCGAACATGAGAACGCAGCAGGGTCACTTCATTCACGAGTTCCAACAGCAGGAAGATCAGATCAGGACAGAACTGCTAAACGACATGACTTTACAGATAGAACAAAAACTGGAAGGTCTGAAAAAGTAAATTGGAGATGACAAACATAAATGACTatcatttataattattatgtttTGTACAAGTACAAGTACAAGTGCAACAgattgtatcttttttttttataatacctTATTGTGAGTTGTGTCCTGACAAATCCCTGTCccagattagtttttttttgtttgttttcctcaataaaattattttttgtaatctaatacaataatacagaaCTATGCTTAGATATGTCACAGTAATgcaaagcataaataaaaacatttgcaatagctgtaatattttatgttgtCTATATCATACAGCTGTACTTTCTTAAaggcactttaaaaaaatatatattatattattttttgtctttataaTTACCTGACCTGTTTAAGGTCACTTTTGTTCAAAGACTAACAATTAAGTCATGATGtaaatttaaaacagttttatgaAATACTGTATACTTTAATCTGCATATACATATagtctaaaaataaatgtgtgtacatatattatatagtggtgtttgaaagtttgtgaaccctttagaaatGTTCTATAAGGTAGATATGGAtaaccaaatcaaacaaatacaAGACAAAATTATACTTTAAAGGTAAAATTAGGGTCTGGtgttttaatcaacagaatGACAATCAGGAGCGAGTGGGCCcagatttatttacataaagtgATCTAGTTTATCTAGACATTGTAAAACACtataaaagtgtgtttaataATACAGTGCTAGTCATATGTTTGGAAACACCCCTGATAGCAAATTTACTCTTGTACAGAGCAGTAACAACATCAGTAACAAGTCTGACAGACAAATATGTTTTGCACATCTGAACTGGCACATATGCCATTGACTCATTCACAGTTAGGCCCACACTGGCCTGGCCTCACCCCACCTGAAAATACAGTTCACATACATATTCTGACTTTTCCATTTAAACAGAAACCAAAAAAGACAAGAgctaaagccatttaaatggtaTTTTGTAGTTTGTCAGAACACAAAAGCTTTTAACAAACAGTACATGCACAAGGCACAAACATCTcaacatttaattattgtatttgtgtgcatgtgtttaagGACACTACtagaaatgtgtgtgtaaacTTGTTTAGTGTAGTAAGCAAATTGCTATAGTAAGGAAAAATCACTGCCAAACGAATGACTTAAATTGGTTAAATAattgtacaaatatttttttgtaaaatatctaTAATTTTACATTTGACAAATGATCTATATttcctttttgtttattaaattaaatgttcatAAATATTAAGATTCATTCAGATTCACCCCTACAAGCCCAGACACATTTCTAAATATTAAGgccattaaaaaatgtaatcatataAATTTTATGAGCAGCTAATTcaagttattttcttttttttttttatctttttttccttttcgcttttatttctttttctttgttctgtgttttgtcCTGTTTTGTGTGCGTGCTCATGTGTATGGGTTAGTGTGAGTAAGTAAATTAAGCTTATGTTTAAAACAAGAGggggaagaagaaaaaggggtaaaaggagaagaaaagaggaaCAAACTGAGATTGTTTATATACAGCGATAATTTCTTATTCGCATTGTATCCTATGACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259083.3 True 2766 mRNA 0.37 8 1890271 1895993

Neighbor

gene id symbol gene type direction distance location
josd1 josd1,LOC107660868 coding downstream 992 1879258 ~ 1889279 (-)
cbx7 cbx7,LOC103382143,LOC107554058,LOC107660863,LOC107584093,LOC107709653,LOC106608943 coding downstream 12062 1870610 ~ 1878209 (-)
LOC103040308 NA coding downstream 52987 1825489 ~ 1837284 (-)
LOC103044468 NA coding downstream 136728 1745216 ~ 1753543 (-)
LOC103043761 NA coding downstream 136757 1749204 ~ 1753514 (-)
xrcc6 xrcc6,LOC107709651,LOC107554059 coding upstream 2192 1898185 ~ 1904629 (-)
LOC103047336 LOC108444256 coding upstream 81621 1977614 ~ 2017175 (-)
LOC103022929 slc16a6,LOC108444260 coding upstream 160107 2056100 ~ 2066246 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding upstream 178637 2074630 ~ 2087567 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding upstream 221547 2117540 ~ 2120383 (-)
G33693 LOC108413510,LOC108273944,LOC100698988 non-coding downstream 26759 1862786 ~ 1863512 (-)
G33690 LOC108413510 non-coding downstream 32556 1856968 ~ 1857715 (-)
LOC111192345 NA non-coding downstream 163014 1720811 ~ 1727257 (-)
LOC111192344 NA non-coding downstream 169825 1718648 ~ 1720446 (-)
G33545 NA non-coding downstream 715616 1174440 ~ 1174655 (-)
G33731 NA non-coding upstream 79836 1975829 ~ 1976108 (-)
G33732 NA non-coding upstream 80336 1976329 ~ 1976585 (-)
G33759 NA non-coding upstream 178342 2074335 ~ 2074606 (-)
LOC111192348 NA non-coding upstream 184982 2080975 ~ 2083243 (-)
G33804 LOC108444266 non-coding upstream 232274 2128267 ~ 2130172 (-)
G33675 NA other downstream 77649 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1488959 389434 ~ 401312 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other upstream 126078 2022071 ~ 2042303 (-)
G33823 srcap other upstream 273030 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 298764 2194757 ~ 2196095 (-)
G33904 NA other upstream 407269 2303262 ~ 2309329 (-)
G34046 NA other upstream 1285175 3181168 ~ 3194377 (-)

Expression


Co-expression Network