LOC103046730 (desi1)


Basic Information

Item Value
gene id LOC103046730
gene name desi1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1905033 ~ 1909731 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259085.3
AGCTGCATGTAGTTTTAGACGCAGCCCATGAGTCTCTCTGGTCCTCAGATCAGCCGGTAAGTCTCTCAGTTCAGTGTTTGCTCTGTCTATCCGGTTTTTGCCTCAGTCTTTAATCTCCGGAGTCACTGTGACACAGCAGCAATAAACAGTGGCCATTACTGCACGACTTCTGTTAGCTAGATTAAGAAAACTCCGTTTTCTTTTTGGCTTTGGGTATTTTAGagtgtttctttcttttgaaaCAGAGTTACTTTACCGTAGGCTTTAACCGGTTTTAGCTACAGTTTGATCCAGCTCGGACGTAGCTAGCTTGTTTAGCTAACCTACTAACTAGCTGACCTCTTAGCTAACTTGTTTTGGTTATAAACTAAGTTAATAGTCAGTAGTCGTGGTCGGTGATGGACGATCAGGGATCAACATACAATGTGAAGCTGTACGTTTACGACCTGTCAAAAGGACTTGCTCGCCAGCTGAGTCCCATGATGTTAGGAAAGCAGCTTGAAGGGATATGGCACACTGCAATAGTAGTTCACGGAGAAGAGTTCTTTTTCGGAGGACAGGGAATAGCAAGCTGTCCACCGTGTGGCACACTGTTGGGAGAGCCCAATGCCATAGTGGATTTAGGAAACACAGAAGTGAACATGGACATTTTCACAGAATATCTTTCATCTCTGGGGGAGTCCACATATAGAGCTGAAAGATACCAGCTTTTTGAGCACAACTGTAACACCTTTAGTAACGAGGTGGCCCAGTTTTTAACAGGAAGAAAAATTCCATCATACATTACTGACCTGCCGTCTGAAGTGCTTTCCACGCCCTTTGGACAAGCACTGCGTCCTTTTATTGATTCCGTCAGTATCACTCCGCCTGGAAACAATGGTATAAATGGGCACTATGGTCTGAGGTAGACTTTGACATCTCTGTGGACCCCTTGATTTGTAGAGGATGAACAAGGTTCAGCACAATGTTTCTGCCCTCTGGAATATTTCTGCCCTCCAACTCATCTGTCCATATACTCCTAAATCATtgattatctcattattttaatgttacttCCTTGGTACTTACTTTTGTCTAAAGGTATTTTTCCAGACTTGCGTTAATTTATGTTGGAACTTTCTGCTTTCCAACATAAATTTATATATAGAGCAGATctctttttaaaactaaaagcaGTCATTGCTACTTTGCTATGTTCTTGCTTATACCAAATACAGGAAGACATATTCTATGTATTATCCAGGAAGGTTTAGGTGATTGGTATAGCACAGAATATTGATTGTATTAAGTGCacttatttatctgtttagGCTTATTTTGGTCTAAATTGCCATTTGACACCAGTTCAGGGTTCACTCCTGTTTGCCATGTAAAGTTTGGAAGAACTTTCTTTTCTCGGGTTTTATAAGCAATTCTTATCTTCCAGTGTCTACTGTGCAGATGTTTCACCCTGATagtcattattttctgtaacaGCTCCATTTTAAGATACAGATAACGGACAACTCTTTATAATGAGTCCAGAAAACTGACTGTGAGGTTGAGTTGCAGGTAtattaaataagtaatatttaatttcaggGAGTAGCAATACATAACAGTAATgttagcaataaaaaaacactactgcTCAAAAATTGGAATAacttattttgttgtttttattacttCGCTATGATGTTAATACAAATGTATCTGGCTATTATTTgtttactatttactataaagAATTAATCTTGAAATGTATTAAGTGCTTTGCcatacaatatattgttcaTGTTTGTCATAGGATTACATTAGGGGGATTACAAGGAATTATCAAAACATtcattcaagattttttttttttgcaacaaaattgatgttatttaaaaatcattgaCTCTAAATTTTGAGCAGTAGAGTATGTTATGGTTCATTATTCATAGAATCTTTCTATATTCCTTCTCTTGTACTTGGTCATGCCTTGCCTACAGTACTGATCCAGTCAGTTGGGGGTTACACCTGTCACTTAAAAAGTTGCTGTCTGTTTATTGGCTAATCTTTTACATCTTTTGTGCTTTAAGCAGAGCAGCATGTCACATTCCAGAAAGACCACTGTAAGGCATCAGGGTCCAAATCTTGTGTTTGAAACCAATGAAACACTGGGACACTGACTTACCTACAAAATCATCAGATTCAGTTTGAAAAAGCAGAAGTAATACTGAAAATCTAGCTTGCATGTGCTTCCAGTTAGTGGAAGAGGGGCTTACAATGGACAGAATCTCAGTAGATTAAAGCTATGTGAAATTATTAAAGTATttcatcacaatattttaagacatttttatgaTGCACAGTATTTATCACAATGTTTTGACACTAAAACAAAATGCTTCACCAGatgcagattcttaaaaactgctaatttaaatgcaaagcactgattttattcagtttatgcAGCACATCATCCATttaaactaattactaattacattAATGTAATGAAACACAAATCAGGTTAGTGTTCTTTAAGGCTCTAATAATGTTCACAATATGCATAGAAAAGTATGTTGTCAATATGATAAGAAAAatcattacaatacaataaaataacatcatgtTGCCCATCTCTACAGTAGACTGATGTAATTCTTACCTGACTGAACTGGCACTGTCTTTTTAAAGTAACTAGACATGTAACTACGTAAACTGAAAAGCAATTATCTCGGGAGTtgattaatgtaattattttatttggggtAGTCACTGCTTTACACTGTGTTATCTTTCCATTCATACCTTATATGTTCATACAAGTGTATTGTATCATCGCTTTAACAGAAAGGTGCAGATGGACAGTTTTTCGtaaattttttttcaaatttttaaaaTCAAGATCTTTCTAGAATTTCTTGAATGTAATAAGAGATTGTATTTGATAAGATAGGAGAGATGAGGAGaggaaaatgtaatacctataAAGCTCTTCTGGTCTGTTGTTGTAATGGTGAAATATTGGAATAATGGTGTAATGATATAAATGGCCACTAAGTGGTGGAAACTGCACAGCTTTTGGATTACGCCACTGACGTTTTCTCAAACTTTTCCTGATAGTCttcatcattatttaaaatggtttaatttCCAACTGTATATTTACCGATTCACTGATATTTAATATTGCACTTATGTTGTTATGctataattaataaacatattttgctCTTTA

Function

symbol description
desi1 Enables importin-alpha family protein binding activity. Involved in protein export from nucleus and regulation of proteasomal ubiquitin-dependent protein catabolic process. Located in cytosol. Part of protein-containing complex.

NR:

description
PREDICTED: desumoylating isopeptidase 1

GO: NA

KEGG:

id description
K22762 DESI1, PPPDE2; desumoylating isopeptidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259085.3 True 3214 mRNA 0.36 6 1905033 1909731

Neighbor

gene id symbol gene type direction distance location
LOC103044365 LOC108273944,LOC108413510 coding upstream 36382 1846203 ~ 1868651 (+)
trnaq-cug_1 NA coding upstream 67457 1837505 ~ 1837576 (+)
LOC103042228 chadl,LOC108413512 coding upstream 77052 1816238 ~ 1827981 (+)
LOC103043879 NA coding upstream 90719 1807011 ~ 1814314 (+)
LOC111192346 gas7 coding upstream 105360 1784438 ~ 1799673 (+)
LOC103047034 shisa8 coding downstream 20437 1930168 ~ 1967340 (+)
LOC103022306 LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085 coding downstream 133834 2043565 ~ 2049789 (+)
arsg arsg coding downstream 156646 2066377 ~ 2074253 (+)
LOC103025124 si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326 coding downstream 178826 2088557 ~ 2097830 (+)
LOC103026481 stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303 coding downstream 189424 2099155 ~ 2107129 (+)
G33623 NA non-coding upstream 33130 1868930 ~ 1871903 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding upstream 169056 1732926 ~ 1735977 (+)
G33609 NA non-coding upstream 173075 1728121 ~ 1731958 (+)
LOC111192343 NA non-coding upstream 347743 1547675 ~ 1557290 (+)
G33511 NA non-coding upstream 560112 1343410 ~ 1344921 (+)
G33737 NA non-coding downstream 118602 2028333 ~ 2030101 (+)
G33747 NA non-coding downstream 175912 2085643 ~ 2087531 (+)
G33748 NA non-coding downstream 178228 2087959 ~ 2088160 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding downstream 207836 2117567 ~ 2119530 (+)
G33788 NA non-coding downstream 214156 2123887 ~ 2124173 (+)
LOC111192342 dnah9 other upstream 517014 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 912515 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 919652 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1480562 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 1673116 181069 ~ 231917 (+)
amz2 amz2 other downstream 141011 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1654299 3564030 ~ 3659132 (+)
G34309 NA other downstream 2261320 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2972825 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3782791 5692522 ~ 5756116 (+)

Expression


Co-expression Network