LOC103022306 (LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085)


Basic Information

Item Value
gene id LOC103022306
gene name LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2043565 ~ 2049789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259093.3
ACTGAGCGACGCGCGCTCCCGCGAGTGATGGATCCATGAAGTTGTTAGTACAAAAATGGCTGATTTCCTGCCCTCCCGGACGGCTTTAGTCTGTATCCCCGCTTGTTTTCTCTCCAACAACGAAGTGGAGCAGCAGAGGAAGTCCAAGGAGATCGACAGATATATTTCTCGGGAGAAGACCTACGTGAAGCGCCTGGTGAAGATCTTGTTACTCGGAGCTGGAGAAAGTGGCAAGTCAACTTTCCTCAAACAAATGCGCATAATTCATGGGCAGGACTTCGATCAGCGGGCCAAAGAAGAGTTCCGGGCTACGATCTACAGCAATGTTATCAAAGGAGTACGGGTGCTGGTGGATGCCAGAGAAAAGCTGCACATCCCTTGGGGAGACCCTTCGAACCAGGCCCATGGAGAGGTCATGATGGGCTTCGACACACGCTCGTCCATGATGGTCCAGGGAATAGTTGAGACCAAAGTTTTCCTGCATTATCTGCCATCGATCCGCTCACTGTGGGCTGACAGCGGCATTCAGACTGCCTATGACAGAAGGAGAGAGTTTCAGCTGggAGAATCTGTGAAATATTTTCTCGATGGTTTGGACAGAATTGGGCAGCtgGACTATTTACCAACCCAGCAGGACATACTCCTGGCAAGGAAGCCAACCAAGGGCATCCACGAGTATGACTTTGAGATCAAGAATGTTCCGTTCAAGATGGTGGATGTGGGAGGACAGCGGTCAGAGCGCCGTCGCTGGTTTGAGTGCTTTGACTGTGTCACTTCTGTCCTCTTCCTTGTCTCTTCTAGTGAGTTCGATCAGGTTCTCATGGAGGACCGTCAAACCAACAGGCTCACAGAGTCCCTCAGCATATTCGAGACCATCGTCAACAACCGCGTCTTTTCGAATGCGTCGATCATTCTTTTTCTGAATAAGATGGACCTGCTGGAGGAGAAAGTTAAGCTTGTGTCTATTAAAGACTATTTCCCGGAGTACACAGAGGAGCCCCACGACCTCTCTGAAGTGAAAAAGTTCCTAGTAGAGTGCTTCCGCAGCAAACGCAGAGAGCAGCAGAAACCGCTGTATAACCACTTCACCACTGCCATTAACACGGAGAACATCCGATTCGTCTTCCGTGACGTCAAGGACACTATCTTGCATGAAAATTTGAAGCAGCTTATGTTGCTTCAGTAACAGCCCTGAAAGGCCACCTGCCCAAAGCAGGTGAATTCTTCTACTGACTGATGACCACCTTACTGAGGTCCACCATAGTGTCCCTTTTAGCTTTCTTGCAGGACTCACTTGAATGGTtatccagatatttttttattttatttctgttgccTACATTTCTTTTAGCGCCTTTGTTTTAGTGTGatcaattttttctttttttctttaactgttTTAGAACCTTTGTTTTGGTGCTTTAAGCTATCCACTTGATTCACTGGGCCACCTACAACATGCACAACATTTTGTTTTGAAGCTGCtattacaaagaaaaaatatttctggTAATGGTATCAAAAAGCCTTAAACAATGTATGTCGAAAATGTGTTTGGTagatgttatatttattttattttttattttatttttttaagttttattttagtaaccCTGGGGACAGGTGGACTGGACAGAGTTGGGTTTACCAAAAGCATCTCAGAACAAAGATGAATCTATGCATATATCTAAtctaatattttagttaaagtGAACATCACACTGAATATTCTCTCCACCAGTGCAGATGGGCTTAACAAAatgatgcttttgggaaactggccatagtttcagtttttgtttagCTTCTGGCTTTCATATTTGTGGGACAGGTATGGACACGCCACAGGACTAAGCAGTTTGTAAGTGTCGCTGAACTGTACATCCATAGTCACACTCCAGTTGCTAACTGACTAGTTGTAAGCTTGGTGTAATCTTAGTTAATTAAGACTCAGGGCTGTAAATAGGCATTGTAGACTCATAATCAAGAAGCGGCCATTCATGATTGGATTTATTTCTTGCAAATTTCTGGTGCGCTTGTATCACACTGAAAGTGCAGAATCCCAGTTAAGGTACCTGTGTATGTAGTGCTGTTgtctttgttgttttaaaaaggGAATGAATCTTAAATGATGTCATtttgttatatagagtttatgtTGTACAGATCCCTTGTCTATAATTTTAAATCACAGCCTGgtattttttcaatttaatatttcCTTTAAAGTAAAGGGTGGCCAGCGTTATCTATGAATGCCTTCCTATGGTGGTTTATATATAAATCTTCCAGAAATAGAAGTGTATATACGCATTTATCTTGTCAGATTCATGTCGGATGCCAAAATTACCTTATGTCTTAGTTTATGTTGTGTACAGTTTAGCCTCAGGGTATGTggtgtggtttatttttggGCAGGAagcagattttcttttaaatctaGAACAAGACTTTCTGATATTCAGCTTTATTTTCTTCAATCACTCTTCACAGCGCAGTGTTGTATAATTTACCATCTCAGAGGAAGCAGCTTCCTCcctctatttttttcctctcagCTCTGTATGATTGATTAAACCTCTCACAGGACATTGTGTCCTCCACATCTCGCTTCTTGAAGTACCTTTCTGATtgtatatgtatcaaatgatcTTTACAATGATTTGAGCTTACTGTAACTTTGAATAAGAAGTTATCACTTGACTTTAATCTGACTTATGGTGGTAAATTGATATTTTCTGATGACtggcactgttttttttatggtttgtaAAACAGTTTGCTCAGTTTAGTCATCACCCACAACAGATGTTTTCTTTGTGTACAGTATCGATTACATTGTTTTCAATCACTTTTGTATAACTCATTTTGGTCCATTAAATCTGACTATTTTACAGAGATACAAGACTTGAGCAGTTTGGTTTGTGACCtatggatttttaaaaagtgataaaGCTGCATGTCTTAATGTAAATCATTTTGATTTATCTAAAGATAAAGTGGATTGTGTGGGAAA

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein subunit alpha-13-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009826 unidimensional cell growth biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:2000048 negative regulation of cell-cell adhesion mediated by cadherin biological_process
GO:0043149 stress fiber assembly biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0045296 cadherin binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259093.3 True 3019 mRNA 0.41 4 2043565 2049789

Neighbor

gene id symbol gene type direction distance location
LOC103047034 shisa8 coding upstream 76225 1930168 ~ 1967340 (+)
LOC103046730 desi1 coding upstream 133834 1905033 ~ 1909731 (+)
LOC103044365 LOC108273944,LOC108413510 coding upstream 174914 1846203 ~ 1868651 (+)
trnaq-cug_1 NA coding upstream 205989 1837505 ~ 1837576 (+)
LOC103042228 chadl,LOC108413512 coding upstream 215584 1816238 ~ 1827981 (+)
arsg arsg coding downstream 16588 2066377 ~ 2074253 (+)
LOC103025124 si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326 coding downstream 38768 2088557 ~ 2097830 (+)
LOC103026481 stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303 coding downstream 49366 2099155 ~ 2107129 (+)
calcoco2 NA coding downstream 58682 2108471 ~ 2117195 (+)
LOC103026968 LOC108444266 coding downstream 75831 2125620 ~ 2130212 (+)
G33737 NA non-coding upstream 13464 2028333 ~ 2030101 (+)
G33623 NA non-coding upstream 171662 1868930 ~ 1871903 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding upstream 307588 1732926 ~ 1735977 (+)
G33609 NA non-coding upstream 311607 1728121 ~ 1731958 (+)
LOC111192343 NA non-coding upstream 486275 1547675 ~ 1557290 (+)
G33747 NA non-coding downstream 35854 2085643 ~ 2087531 (+)
G33748 NA non-coding downstream 38170 2087959 ~ 2088160 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding downstream 67778 2117567 ~ 2119530 (+)
G33788 NA non-coding downstream 74098 2123887 ~ 2124173 (+)
G33791 chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 non-coding downstream 80885 2130674 ~ 2134078 (+)
LOC111192342 dnah9 other upstream 655546 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1051047 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1058184 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1619094 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 1811648 181069 ~ 231917 (+)
amz2 amz2 other downstream 953 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1514241 3564030 ~ 3659132 (+)
G34309 NA other downstream 2121262 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2832767 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3642733 5692522 ~ 5756116 (+)

Expression


Co-expression Network