LOC103025124 (si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326)


Basic Information

Item Value
gene id LOC103025124
gene name si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2088557 ~ 2097830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259105.3
CTTTGTCTTGACTTTGTCTTTTCCTTTGTCTTGACTTTGCCTTTGTCCTGCATTAAATAGCAATTAAAGAGGTGCTATTTTTTAGACTTTACTGGAACAATTTCCAAGCTGCTATATTATGTTAAAATGCTACAAATTGCTTTAAAAGTAAAgctttttaagtgtatttttcttACTCTATAGCTGAATGCTCTACAAATAGAAGCTACATATAGACAAATATTTAGAAACAGGCTGGATCAGTACACAGTACATGGCtattattagttaaaaaaatttatatgaatctaaaatgaaaaaaatgtgaatataaatgtataattctgCATTGTGTCTTCTACTATAAAGACTGAATGATGTGTTTCAGCTATAAACAACAGGACTGGGGTTAAGTGCTGTGTTAGACCAGAGTAACAGGATGGCCTCTGATGTCAGTGATGACTATAAGTCTCAGCATGGTGTCTCAGGGCTGCGCGGAGTGTAAGAACCTTATCTCCTCTAATCTTCTTTCCCTTCTGTTATACACAGGTGGAGAAGTCAGATGGAGCtggaagagagagaatgaaacgTTTTCAGATACGTTTTATTTCAGTTGCTGTGAAGCTCATCATGCCTGAAGAGCTCGTCTGAATGTTGTATGTCACTGCTGTGTTAGTGACGTACGTGATTGTGTGATTTCAGTAAGGACCACTCTTCCAGACACTCTACCTTTTCAACAGCAGAGATGGAGGAGGAAGATATCCGCCAGCAGAAGCTTGACAATCAGCGAACACTTTTGATCAAGAAGCAGCAGAAACGGCGAGCCAACGCTCAGATGATGACGGCCAATAATGAAGCTCGTCCAAAGAACCGCAAGCAGAAATCTGGGCCTGAAGATACAGCACTGTTAATCAGCCAGTCTCAAAGCAGCAACTCACTTAATGATCCCATGCTGGAGCAGGCCCATGATAACATGCTGGAGGAGATTAATCTGGGTGAAATGAACATCTCAGCTCAGATTGCAGTGATATCAGAAGAAACACCACCGCCTGCTCCACccattattaaaacaataaacctCGATACGGACAATCAGACCAGCCCTAAACACACAGCGGACACACTCAGCCAGGCTGAGGggaagaaaaacaagaagaaaggAGTTAAAAAGAATCAAGCTAAATTGCTCGATCCTGATGGTGTTGGGGAtggagaggaaaagaaagagaaaaaaacattgaagaaaaaagaaaagaaaaatgactcaaaagagaaagtgaagaaaacagaggaagaaaaaaCAGTCCAGATTGAATCAGTGGTAGAGTTCAACATTACAGAAGAAACGAAAGCTAAAATAGaaagtgatgatgatgatgacgacagAAAAGACTGGTCAAAAAAGCCAGTTCCTCCAACCCCGAAGAAAAAGCCTCATTTTAATGCCTCCAGGTGCCATCTGAGTGACAGTGCAGATGAGAACGAGGATGAggagaaaatgataaaaacaaagaaaaaatccCAAAAGAGCACAAAGAACAATTACAATCTTGCTTCATTAAACTCAAACTACAGGCAGTCCTCATCCGACAGTGAATCTTCAGATATGGGAAAGTCTTCTCCAATCTCTCTGGAAGATCTGGAACAGTTTGCTCTTAGGCCTGCTCCAAGGGACACAACAATCCAGTGCCGGATCACCCGAGACAGGAGAGGAATGGAGAAAGGAATCTATCCCACGTATTATCTTCACATGGAGAAGGAGGATGGGAAGAGAGTTTTTCTCATGGCTGGAAGAAAACGTAAGAAAAGCACAACGTCCAATTATCTGATCTCCACTGATCCTACTGATTTATCCAGAGACACAAGCAGCTATATAGGCAAACTCAGGTCAAATGTTTTAGGGACTAAATTCACTGTATATGATAATGGAGAAAACCCAGAAAGGAAGCAGTTTATTAAGGAAAGTGAATCACTTCGGCAAGAGCTTGCAGCAATATGCTATGAGAAAAACATTCTGGGCTTTAAAGGCCCCAGGAAAATGACAGTGATCATTCCTGGCATGCATGAGAATGACGAAAGAGTCAGTATTCGTCCAAAAAGCGATATCGAATCTCTCCTCACTCGTTATGAAAATGGAAATAAGGAGAATCTGGTGTGTCTGGTGAATAAGTCACCCAGCTGGAACGAGCAGACTCAATCGTATGTGCTCAATTTCCATGGCCGAGTGACACAGGCATCTGTGAAGAACTTCCAGATTGTTCATCCTGATAACGAGGAGTACATTGTAATGCAGTTTGGAAGAGTGGCAGAGGATGTTTTCTCCATGGACTACAGCTTCCCCATGTGTGCTCTGCAAGCATTTGCCATCACTCTGTCCTCATTTGATGGAAAACTGGCTTGTGAATGAACTCACGGCTTTCGTTGTATGAATGTGCTATTTAGGCTACTAGAAGGCACCACATCTGGGGACTTATGGCCTTTGGAGAACTTCAGTAGCAGAAGTTCTCATGTATTCttggacaaaatatatatttattgtcagCAAGTTTTGGAGGCAGCAAAAATAATGTGCAATAAGCATAAGCTACAATAGCTATGGGTTAtactcacatttgtattttcttattttttttatgttatgacATGTCATtccataaaaataattactttaccggtgtttgaaa

Function

symbol description
si:dkey-220f10.4 Predicted to be involved in protein localization to cilium. Predicted to be active in cilium. Is expressed in epiphysis; retina; and retinal photoreceptor layer. Orthologous to human TULP2 (TUB like protein 2).

NR:

description
PREDICTED: tubby protein homolog

GO: NA

KEGG:

id description
K19600 TUB, TULP; tubby and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259105.3 True 2663 mRNA 0.40 12 2088557 2097830

Neighbor

gene id symbol gene type direction distance location
arsg arsg coding upstream 14304 2066377 ~ 2074253 (+)
LOC103022306 LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085 coding upstream 38768 2043565 ~ 2049789 (+)
LOC103047034 shisa8 coding upstream 121217 1930168 ~ 1967340 (+)
LOC103046730 desi1 coding upstream 178826 1905033 ~ 1909731 (+)
LOC103044365 LOC108273944,LOC108413510 coding upstream 219906 1846203 ~ 1868651 (+)
LOC103026481 stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303 coding downstream 1325 2099155 ~ 2107129 (+)
calcoco2 NA coding downstream 10641 2108471 ~ 2117195 (+)
LOC103026968 LOC108444266 coding downstream 27790 2125620 ~ 2130212 (+)
LOC103028296 LOC108444267 coding downstream 37366 2135196 ~ 2148906 (+)
srcap srcap,LOC107669484,LOC107706895,LOC107582813,LOC107552729,LOC102199900 coding downstream 55054 2152884 ~ 2177072 (+)
G33748 NA non-coding upstream 397 2087959 ~ 2088160 (+)
G33747 NA non-coding upstream 1026 2085643 ~ 2087531 (+)
G33737 NA non-coding upstream 58456 2028333 ~ 2030101 (+)
G33623 NA non-coding upstream 216654 1868930 ~ 1871903 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding upstream 352580 1732926 ~ 1735977 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding downstream 19737 2117567 ~ 2119530 (+)
G33788 NA non-coding downstream 26057 2123887 ~ 2124173 (+)
G33791 chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 non-coding downstream 32844 2130674 ~ 2134078 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 178938 2276768 ~ 2281249 (+)
G33875 NA non-coding downstream 235913 2333743 ~ 2334085 (+)
amz2 amz2 other upstream 31594 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 700538 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1096039 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1103176 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1664086 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1466200 3564030 ~ 3659132 (+)
G34309 NA other downstream 2073221 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2784726 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3594692 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 4148816 6246646 ~ 6258050 (+)

Expression


Co-expression Network