snf8 (snf8,LOC107692042,LOC107734219,LOC107554070)


Basic Information

Item Value
gene id snf8
gene name snf8,LOC107692042,LOC107734219,LOC107554070
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2117540 ~ 2120383 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259107.3
CCTCCTCAAAAATCACCAGAGAAGAAACAGCTACTGTTCCCTGATTGCGGAAAAAACATTAGAGCTTGTAGAAGATAAACAGTTAAACACTCCACAAACAGGGAGGAGAACAGCGCGTAATACAGTGTATTTTTACTCTGCAGTGCTCGTTTTTATTCAGATTAACTGTGGGTAACTTTGTGTTGTagaaactgtgtgtgtttacgcTGTGTGAGCTGATTCTGcgggttagttagttagagttaGCCGGTTAGCTCTAACTGAACTCAGCCTCATTTCTCCTGaaatctttaaatgttttaattctgGAGTGAATAACTCGGGAGTCGGCAGCAGCGGTCTCTTTCTTTATGTCtgttctgctctgctctgttgAAGTCTGTTCGGGTTCTGGGACTCTGAGGAGCAGCCATGCACAGGAGAGGAGTCGGGGCTGGAGCCATCGCCAAGAAGAAACTCGCAGAGGCAAAGTACAAAGAAAGAGGGACAGTCCTGGCTGAAGATCAGATTATACAGATGTCTAAACAGTTAGAAACCTTTAAAACCCATCTGGAGGAATTTGCCAGCAAACACAAGCAAGAGATTCGAAAGAGTTCACAGTTCAGAGTTCAGTTCCAAGAAATGTGTGCTACAATAGGAGTCGACCCACTAGCATCCGGTAAAGGATTTTGGTCAGAGATGCTTGGAGTTGGAGATTTCTACTACGAGCTTGGTGTGCAGATAATTGAAGTCTGTCTTGCTCTAAAGCACAGAAATGGGGGACTCATCACTCTAGATGAACTCCATCAGCGTGTGTTAAAGGGAAGAGGGAAGTTTGCTCAGGATGTGAGCCAAGATGACTTGGTACGGGCCATCAAAAAACTCAAAGCGATGGGGAATGGCTTTGGAATGATTCCTGTTGGAGGCTCTTATTTAGTCCAGTCAGTCCCCGCTGAGCTCAACATGGATCACACGGTCGTCCTTCAGCTGGCTGAGAAAAAGGGCTACGTAACAGTGAGTGAGATCAGAGACAGCCTGAAATGGGAGAAGGAACGGGCCTGTCACGTACTTGACCACCTGCTAAAAGAGGGTCTAGCATGGTTGGATTCCCAAGCTGCTGGGGAGCCACAATACTGGCTGCCCGCCCTGTTCTCTGAACTTTCTTCTCGTGATGTCACACCTGAGGAGGCTAACCAAATGACACCATGAACAGAAGAAATGATTTGGTATAAACTGAGAAATCAGTGACGATAATGTTTTCAACTAGGTTGAATACTATCCTTTATAGTGCTGAAATCACAATGTTGAGTGCTTCCttgatgtgtgtttgtgagagataACTGGTAGCTTGAATGTCTTGAAATGGATAATAAatcttttattttctataaa

Function

symbol description
snf8 Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within multivesicular body sorting pathway and protein transport. Predicted to be located in cytoplasm. Predicted to be part of ESCRT II complex. Orthologous to human SNF8 (SNF8 subunit of ESCRT-II).

NR:

description
Vacuolar-sorting protein SNF8

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259107.3 True 1371 mRNA 0.44 8 2117540 2120383

Neighbor

gene id symbol gene type direction distance location
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 29973 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 51294 2056100 ~ 2066246 (-)
LOC103047336 LOC108444256 coding downstream 100365 1977614 ~ 2017175 (-)
xrcc6 xrcc6,LOC107709651,LOC107554059 coding downstream 212911 1898185 ~ 1904629 (-)
LOC103046112 NA coding downstream 221547 1890271 ~ 1895993 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding upstream 10635 2131018 ~ 2134043 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding upstream 156374 2276757 ~ 2282984 (-)
dhx8 dhx8,LOC107706906 coding upstream 504555 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 1100964 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 1220229 3340612 ~ 3380599 (-)
LOC111192348 NA non-coding downstream 34297 2080975 ~ 2083243 (-)
G33759 NA non-coding downstream 42934 2074335 ~ 2074606 (-)
G33732 NA non-coding downstream 140955 1976329 ~ 1976585 (-)
G33731 NA non-coding downstream 141432 1975829 ~ 1976108 (-)
G33693 LOC108413510,LOC108273944,LOC100698988 non-coding downstream 254028 1862786 ~ 1863512 (-)
G33804 LOC108444266 non-coding upstream 7884 2128267 ~ 2130172 (-)
G33833 NA non-coding upstream 71707 2192090 ~ 2192968 (-)
G33835 NA non-coding upstream 73904 2194287 ~ 2194607 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding upstream 165887 2286270 ~ 2287428 (-)
G33909 NA non-coding upstream 198225 2318608 ~ 2318897 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 75237 2022071 ~ 2042303 (-)
G33675 NA other downstream 304918 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1716228 389434 ~ 401312 (-)
G33823 srcap other upstream 48640 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 74374 2194757 ~ 2196095 (-)
G33904 NA other upstream 182879 2303262 ~ 2309329 (-)
G34046 NA other upstream 1060785 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1662742 3783125 ~ 3789192 (-)

Expression


Co-expression Network