calcoco2


Basic Information

Item Value
gene id calcoco2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2108471 ~ 2117195 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259108.3
tttcccagcatgcaccgcgACTTCGGAGCCGCACCAACAGCAACAGCGGGTTGGACACTGCAGCGACACAGCGGCGCTCGAGCTGCGACACCGCGGGTTCAGGTTAAAAATGAGCGACAGCACGGAAGAATATCGGGCTACGTTGGTAATGGAGCGCTCTTCCTACTCTCAGGTTGTTTTTATGGATGTGCCTCGCTCTTACCCACCCAGCACTCCTGTAAAGTGCTCTTTCACTGTGACTGGAGAACTGATACCCACCTCTAAAGACTGGATCGGCGTTTTTAAGGTTGGCTGGAATTCGACACAGAAGTACTACAATTATGTGTGGGTGGAGCCTCCTTTGGAAAACGATGGAACTGAGCCCCTTAAACTAGAAGTTGCCTTTAGTGAGTACTACCTTCCTAAGGATGATGGGGAGTTCTACCAGTTCTGCTATGTGGACAGTGGTGGACAGGTCAGAGGAGCCAGCACGCCATTCTGCTTCCAAATCCCAGCAGAATCAAGCCTAGACAGCAGCCTGGAAAAAGACATTTTAGTGATTACAACACAGGAACAAGCAGagcagatggagaaagagaagaagggcTTAGTGACAGAGATGGAACacttaaaagaagaaaagaagatttTGAAAAATGAGCTGGATGAGAGATTGCGTGAGATCCACCGTCTGAGGATGTACATAGATAAACTGAAAGCAGACAGCACAGCTGAGACTCAACCATCAAAAGAACAGAGGTCTGAGATTGTTGAACAGGTTACCCGTAAGGAACAGCTTCTCTGTGACGCTGTGGCAGAAGACGAAACCAAACAAGAACAGGAAGTGCCGACAACACCGTCTATGCAGCCAGCTTCAATGATTGGTCTCCAAGACAAATATGATAAGGCCATGCAGAAGATCAGCATGCTGAAGCAGGAGAAACTTCACCTGGAGGAACAGGTCGAAGCCCAGCAGGCAAAGAATTTACAACTGGATTCCAAAATGAAAGAAGCTGAGGAGGATTTTCACAGACTACAAGATCATGTCCAGTTGCTGCAGGTTGATGTACAAAGCAGCCGGAAAGAGAATGAAAGGTTGCATTCCGAAATTCAAGAGACCATAAGAGAGGTGGAGGGACTGCGGGTAGAGAACAAGGCTTTAAAAGGAGCTTTATCAGAACAAGGGCCTTCTGATGGGGAAAATGTTAAGGTGCAGACCATCCTAAAGCAGCTGACAGAAGCCAGAGGAACCCTGCACAATGAGATTTCAAACTGCAATGAGGCAAACAGACGTGCAGATAAAGCTGAGATGGAGCTGAAAGAACTGAGGAAGCATCTTGAGCAAAGACCAGTGGCTGAAGAAAAGCAACAGAACAAAGGCCAGATTGAGGCCCAGCTTAAGGAAGCCCTGAGAAGAATTGATGAACAGGACAACGCTGTGGCAAGGAATCAATTAGAAAAGGAAGAACTTTATGAAGAGAACAAGaaactcaAAGAAGATGTAAGCAGATTACAAAAACAACTGTATGAACTCCAGGTTGCATCAGTAGCTGCTGTTGCTAAACCACAAACCAGCCCCATCAGTCCATCATTTACTGATCCATTCTCAGGACCAGAGTTGCCCCCTCATTACTTCGACAATATCGCTGAACTCTCAGGGAATTCAGCTGGGACAGAAAACaagAAGGTGTGCCGTCACTGTCAAGTGTGTTTTCCTGAAATCAGTGAAGATGAACTGACAATGCACGAGCAATCTCACAAAGTGTGTCCCTTCTGTACTCTGATCTGTGATGATCTGGAGCAGCAGGAGTTTGAAGACCATGTGTACAGCCATGAATGACCGCCTCATCTAAGCCCTTCTAAGACAAATAAGCCATTgctaatttaaacatattagaactttaaaaaacatcagTAATTCCATATGTTGTGGCCTATCTCTAAATGTTTCTTCCTACtaatatatttcagtatttatttatttctcaccTAAACATGCAATACTGCACTGTGTAAAATACagttgaaaactgtgattgttTTCAAATTGCTGTAATAATAAGAGCAATAATAAACAATTCTAtcattta

Function

NR:

description
calcium-binding and coiled-coil domain-containing protein 2-like

GO: NA

KEGG:

id description
K21348 CALCOCO2, NDP52; calcium-binding and coiled-coil domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259108.3 True 2069 mRNA 0.45 14 2108471 2117195

Neighbor

gene id symbol gene type direction distance location
LOC103026481 stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303 coding upstream 1342 2099155 ~ 2107129 (+)
LOC103025124 si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326 coding upstream 10641 2088557 ~ 2097830 (+)
arsg arsg coding upstream 34218 2066377 ~ 2074253 (+)
LOC103022306 LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085 coding upstream 58682 2043565 ~ 2049789 (+)
LOC103047034 shisa8 coding upstream 141131 1930168 ~ 1967340 (+)
LOC103026968 LOC108444266 coding downstream 8425 2125620 ~ 2130212 (+)
LOC103028296 LOC108444267 coding downstream 18001 2135196 ~ 2148906 (+)
srcap srcap,LOC107669484,LOC107706895,LOC107582813,LOC107552729,LOC102199900 coding downstream 35689 2152884 ~ 2177072 (+)
ttll6 ttll6 coding downstream 60984 2178179 ~ 2188201 (+)
LOC107197898 NA coding downstream 74847 2192042 ~ 2195665 (+)
G33748 NA non-coding upstream 20311 2087959 ~ 2088160 (+)
G33747 NA non-coding upstream 20940 2085643 ~ 2087531 (+)
G33737 NA non-coding upstream 78370 2028333 ~ 2030101 (+)
G33623 NA non-coding upstream 236568 1868930 ~ 1871903 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding upstream 372494 1732926 ~ 1735977 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding downstream 372 2117567 ~ 2119530 (+)
G33788 NA non-coding downstream 6692 2123887 ~ 2124173 (+)
G33791 chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 non-coding downstream 13479 2130674 ~ 2134078 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 159573 2276768 ~ 2281249 (+)
G33875 NA non-coding downstream 216548 2333743 ~ 2334085 (+)
amz2 amz2 other upstream 51508 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 720452 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1115953 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1123090 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1684000 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1446835 3564030 ~ 3659132 (+)
G34309 NA other downstream 2053856 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2765361 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3575327 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 4129451 6246646 ~ 6258050 (+)

Expression


Co-expression Network