LOC103026481 (stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303)


Basic Information

Item Value
gene id LOC103026481
gene name stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2099155 ~ 2107129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259109.3
TTAGGGCGTGAGGGCAGGGCTCTCAGTAGGTGGAGATGGTGTGCCTTTAATGGTGGCTGTGTCACACACTGAGGAAGAGCCGTTTCTTTTTGACTTTGAATGGAAACTCCCTTCTTCTGTTGTTGATGTCAACAAAGTTAGTGCGTTAGATGAAGAGCCCGAGTCTGTAGAGAGGGTTTAAACAAGGAGCAACGATGCGAGACCGAACCAAAGAACTGGGAAACCCTGCAGAGGGTtcagatgaagatgaagaaggCACAGCCCTCATGATAAAACCAGGCACTGGAAACTCTGGAAAGGAAGATAAAGATAATGAGGCTTTCTTCAGAAAGGTCCAAGAGATCCGAGAAGGCCTTGAAACTCTTAAGAAGAAAGTGGCTGAACTGGAGAACAAACAGAAAACTGTTTTAGGGGTGGCACTGCCAGATGACAatatgAAAAGGGAACTTCAAGTCCTAAGGGATGAGATCAAAGTACTGGCCGGACAGATCCACAAAAAACTGAAGAATCTTGAACCCAAGAAAACTGATGAAGATGGGAAATACATTCCTATAAACTTAAGAATGCAAAGAACACAGCATGCTGTCTTGTCTCGTGACTTTGTGGAGGTGATGGGGAACTGTAACACTATTCAGGCCCAGTACAGAGACAGAAATGTGGAGCGGATACAAAGGCAACTCAAAATCACTGGCAATAATGTGACAGATGAGCAGCTGGAATCGATGCTTGAGAGTGGACAGACCGATGTGTTCACACAGAATATCTTAACAGATGTTAAAGCTACTAAGCAGGCACTGAATGAGATCGAGACACGGCATGATGAGATTCTTAAACTAGAAAGAAGCATCAGAGATCTTCATGACATGTTCCAGTATCTCGCCATGGAGGTGGAGGCACAGGGTGAAATGGTTAATAGGATTGAAAACAATATAATTAACTCTACTAACTACGTGGAGAAGGCTGTTGCTGAAACTGCAGAAGCTGTTACCTCTCAGAACAAAGCCCGAAAGAAAAAGCTGTGGATTGCATTATGCTGCGCAATTTTACTTGTGATAATTATTATTGCTCTGGCTGCTAGTTTAAGCTGAGtgttttcatgCTGCTGGCGTCTCCTGTCTTGAGTTTAAAAGAAATTCCTACTGTTATTAAATTCACAAACCTGTTTTACACTAACATATTCATCGTCATCATGTCCATAGCATTTTCAGCTCTCCCGGATTCTCCACTCATTTACTGTTGGAACAGAGAAAGTTTTTCTGAACTTTAAGTGTTATGAATATAGTACAGGGACCTTTTCTGTATATTGAATTTCAGGCATAttcatttttaacctttttaagtttaaaagctATGATGCACTATGATGGATTTGGATCATCTTGGATGGTCTTCTTTTTGAAATCAGTACTTATAAAATCATTTCGGCTCTAGAAAAGGAAAACTTCATTTCTCAGGAAAACcaaaattattaaacaaattctTAATATATAAGTAGTTATTACACCAGTGAGACCCACTGTTAGAGATATGAGCTATTGCTTTTGTCTTAATGTGTTGATTGTTTCATGGTGTTATTCTGCATAATTTTGTAAACTATGTAACTTTCTGAAGACTTGAAATTTCTCAAGATGAGCATCCATCACACATCTGTACATAGATACACactaatatgttttatatttcttttacaaTGCAGTATCTGCTCCTAAACCATTATAACTGCTTATGTCATTAAATAACATGAATAAGGGCTATTTTTATTTCTCCAAAAGCATCATAGATCTACATGTAGTCTTTTAATTGTGAGCCACTACTTAGAATTGCATGTAAGAAGTTGAAATTgttaatgaagtaattgtaagaTGCATAAAAGGTGATCTACAGTAGGTGCTTTGTTTGGGCTTTAGCAGCTTTTCATTATGTACTGTTACTTTCAAGTGCCCAGGAATCGTCATTGTTTTACTTTCTAAGTATCAGTGGAGAATAAAGTCTCTGAGAGAGTGCAGTATTTGTGGAGAATGATTAGGTGTCATTTTGTACTGAACTGATCTGATCCcaattattttaatgtagaactattgtttttaaataaaatatatcgtATACTAAA

Function

symbol description
stx4 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; synaptic vesicle fusion to presynaptic active zone membrane; and vesicle docking. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Orthologous to human STX4 (syntaxin 4).

NR:

description
syntaxin-4-like

GO: NA

KEGG:

id description
K13502 STX4; syntaxin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259109.3 True 2110 mRNA 0.38 11 2099155 2107129

Neighbor

gene id symbol gene type direction distance location
LOC103025124 si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326 coding upstream 1325 2088557 ~ 2097830 (+)
arsg arsg coding upstream 24902 2066377 ~ 2074253 (+)
LOC103022306 LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085 coding upstream 49366 2043565 ~ 2049789 (+)
LOC103047034 shisa8 coding upstream 131815 1930168 ~ 1967340 (+)
LOC103046730 desi1 coding upstream 189424 1905033 ~ 1909731 (+)
calcoco2 NA coding downstream 1342 2108471 ~ 2117195 (+)
LOC103026968 LOC108444266 coding downstream 18491 2125620 ~ 2130212 (+)
LOC103028296 LOC108444267 coding downstream 28067 2135196 ~ 2148906 (+)
srcap srcap,LOC107669484,LOC107706895,LOC107582813,LOC107552729,LOC102199900 coding downstream 45755 2152884 ~ 2177072 (+)
ttll6 ttll6 coding downstream 71050 2178179 ~ 2188201 (+)
G33748 NA non-coding upstream 10995 2087959 ~ 2088160 (+)
G33747 NA non-coding upstream 11624 2085643 ~ 2087531 (+)
G33737 NA non-coding upstream 69054 2028333 ~ 2030101 (+)
G33623 NA non-coding upstream 227252 1868930 ~ 1871903 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding upstream 363178 1732926 ~ 1735977 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding downstream 10438 2117567 ~ 2119530 (+)
G33788 NA non-coding downstream 16758 2123887 ~ 2124173 (+)
G33791 chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 non-coding downstream 23545 2130674 ~ 2134078 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 169639 2276768 ~ 2281249 (+)
G33875 NA non-coding downstream 226614 2333743 ~ 2334085 (+)
amz2 amz2 other upstream 42192 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 711136 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1106637 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1113774 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1674684 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1456901 3564030 ~ 3659132 (+)
G34309 NA other downstream 2063922 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2775427 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3585393 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 4139517 6246646 ~ 6258050 (+)

Expression


Co-expression Network