LOC103026968 (LOC108444266)


Basic Information

Item Value
gene id LOC103026968
gene name LOC108444266
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2125620 ~ 2130212 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259111.3
GCTGACGCATGCGCAGCGCGTACGGCGTTTAAACCGACTGTGCGCTCAACATGGTGCTGAGGATCACGTTAGAAAATGGGGGACGTTAATAAAAGTGAAGCGTAGGAGCGCTTTAAACGGAACTTATCTCCTAGTATGGGAAGAATTCAGGAGGAAACTGGGGCGTTTCCACACCTGCGGTTCACAGGCTGATTTAACTGAGCGATTTTTGGAGGCAGCGGGCGGAGAAAGATagtgttattgttttttctcCGCATCCAGCAGTTCCAGCACTGCGGATCAAAATGGAGGCGAGGACTGAGTAACTACACCgggcagttagctagctaacctagcttagctaactagtgAAGTGGGGGATTATAACCTACCTAACATCGAATGCGGCCTGTTGGTTTTATTATTTGAAAGCCTGAGTCTGCAGATGTTTAGTTAGCTAGGCTATCCTGTGGCCTGTACTGATTAGCggttagctaacctatctaGCTATATAGATAGGACGCTAGCTAAGCTAATAGGCTAGTTGGCTAATTCGCTAGCTGGCTAACCAGCTAGCTGGGTTTGCTTGTTTAGGTTAGCTTGTGAAGGCggtgttgtttgtgtttgtgttcttgGAAACATCATGAAGGATTTCCAGCTTTGTTTCCAGGCGGGTCCAGgttaAGAACACACCTGCGCCGTTGACTTACGTGGTCTACCCTGGTTGtaagctaacatcagctagctTATCTAACCTACCTTGCAGGCTGCCATACTAAATAACTGACCACCCCACGCCATTGGAGCTAACTACCTAGCTATGGTTAATTCTGTAGCTTGTTGTTCTCGCCATGAATATGCGCTCCGAGTCCCTCTCTAACGTGGCACTGCGCTCAGAATCCAACACCTTCTATCTGTCGAGAGCAGGCTCGGGTCACACTGTCGGCGCCCCGAGAAATTCGTATTCTTTCGCGGTTGAACCGCATGACTCGCTCGGTGTCACCCTCAGCAGCGCCGCACAGCACTTCATCACATCCAGAAAGCTGGACAAGAACCTCGCTGGGAAGGCTCCTCGGCCGTTTCTGCCCGCAGGACAGAACAAAGCGGTGGCTGTTCCTCCTGGAGCCAGCTCTGGGAGCACAGAGACACTTGCATCTCAAGCCAAACAAATGGGGGGCGAAGGGACCCCTGTTAAAAGTAAAACTCCACTCGGACAGACCAACGCCATGGACAACAAAGCAGAATTTGTTTCAATGAACTCTCACAATTCCAGGGAATCGGGTGGGGAGGACAGTGCGAAGGGGTTGGATACTATGGGGGCTCATGGTGTGGCATCTCATGAACACAACCCAGAGGGTAAACGAAAGAACATGAAGAAGACTCCTGGCCATCCAAGTGCACAGGCCAGTTGTCTTCGGCAACTTCTCCTGCTTCAGCTGGACCTCattgagcagcagcagcaacagctgcAGTCAAAAGACAAGGAAATAGATGAACTTAAAGCTGACAGGGACACGCTTCTGGCTCGGATTGAGCGAATGGAGCGGCGCTTACAGTTGACGAGCAAAGAACCACGTGATAAGCGCCTGTTTCAGCCTTTGGAGAGATGGGTCCCAGACACTGATGACTTCTGGGATTCTGATGTAGGAGACAGCCCTCAAACCCCATCAGCCAAGGGCTCTGCTTTTAGTCGAAGCAGCAAGGTGCAAAAGAGGAAATTTGGCTTCATAGATTCAAAGGTACAGAGGCCACAGGGGAAAGCTTCCAGGTTAACACCCCAGAAATCAGACACTGGAGGAGCCTCACCATGTCAGAGAGATCTGCGGAACAAGGAGACTCCAGAGAAAACTGGAGTGGGAAAGTCGGAAGCCCTCTCAGAAGGAGAAGATAACTGTGAACATCCAGACATACCATACATGACGACGACAGAAATGTACTTATGCTGTTGGCACCAACCTCCCGTCTCACCCCTGCGTGAGCCATCCCCTAAGAAAGAGGATGATGTGGCCATTCCATCATGGAGGGAAAACAGCATGGAGCCTTTGAAGGAGGAAGATGCCTTTGACATCCCTGAGAGTCTTGATGACGGTGTTTTTCTAAAACGCCATGCAAAGCTGGAGCTGGATGAGAAGAGAAGGAAGAGATGGGACATTCAAAGGATACGGGAGCAGCGTATGCTACAAAGGCTCCAACAGCGCATGGAGAAGAGAAAGATAAATGTTCAGGAGAGTGAGCCAGAGATGTCATCATTTTATCCTGAGGTTGATGATGTGGAGTCAATTATCATCACCCCCTTTCTCCCTGTTGTGGCCTTCGGTCGCCCTTTGCCCAAAATCACTCCACAGAATTTCGAGCTGCCATGGCTTGATGAACGAAGTCGCTGCCGTatagaaaatcagaaaaaacaaaCTCCTCACAGGACCTGCCGGAAATAAGCCAGTCTTCTTGAGATGTACATATCCAAGTTGAATGctgcagaaagaaagagatggcCCCTTTTAAGGCTACTGGATACTTGATCGGTTTCAtgggtttgtgtgtttgtaattAAATGGCAATAAGTGAAGATGGCAGTGAtgcagatttatttatattgttaatCATTAGGATAATCCTATCCACAGAATGCCCtgtgattttgtttaaaaaaactgtctAGTGTTCAGCATTGATTGCCATATAAATAGTTCAGGTCCTGCTCTGTCTATTTTTACATGAATGATATTACTGCAGGCACCGCTTTAAGCAACAAGTTTCATGTGCATTACCTTGTGGACATATGATGCATTTTTTGCATGTAATGCCTCAATGGATTTTTGAATATCGGGCTGTATCACTGTATGTGTACCATGGAGGTATAGTGAAGAGTGTGAATCGGAACCCTCAAGTGAGGATACGAAGGCTTATGACTTAAATCCTTAATTTCTCTTAACTTTAGAATGCATGGTTGTCTGGAGTCAACAAATCATATGGTGAGAAGTTTCCATTTTTGTAAGTGCAGTAGAAattccataaaaaaaagttatcacCACCTAAGAGTTGCATAAGCagtgtgtgattttgttttagCTCAAGTAGTTCTTGTTTGTAAGCTTCAGCTGGAGGTCTGCACATCTGTAAAGCTGTTCATACAAATGGACTAAAAGGACATCCAATAATTTTTCAATGTTTATCAAGTGGTCAGTCATGATTCTTGTTTATATCTGATCTTGTAAATGGGAACTTTCACCACTTTAACTTGTCTCAAAATCTTGTCTGCTTCTAAAAGAACATCTTCAAGCATCATGTCAAGCGAATGGTCATGATAAACTTTGTGCCTCGTACAACAaaattttaatagaaaatcCAAAGCCATGCCTCATCTTAGTCTGTAgtcacttgattttttttgttttggcatGAATGGCTTGTCACCACATGCATACCTTTTTTTCTTGAACATGTGATTTTTGTGTCTAGCTTCATCAAATGTGTAGGATGTATATAAgggaaaatgttatttttttattatttatgtttgagtgTTGTATGTTCAGTATAGATGATATATTGATAGAATGTTGACAGAGTAACTGAAGAAATTTCttttgcaaaaaatacaaatcctattgtttctga

Function

NR:

description
PREDICTED: male-specific lethal 1 homolog

GO: NA

KEGG:

id description
K13163 MSL1; male-specific lethal 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259111.3 True 3597 mRNA 0.45 9 2125620 2130212

Neighbor

gene id symbol gene type direction distance location
calcoco2 NA coding upstream 8425 2108471 ~ 2117195 (+)
LOC103026481 stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303 coding upstream 18491 2099155 ~ 2107129 (+)
LOC103025124 si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326 coding upstream 27790 2088557 ~ 2097830 (+)
arsg arsg coding upstream 51367 2066377 ~ 2074253 (+)
LOC103022306 LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085 coding upstream 75831 2043565 ~ 2049789 (+)
LOC103028296 LOC108444267 coding downstream 4984 2135196 ~ 2148906 (+)
srcap srcap,LOC107669484,LOC107706895,LOC107582813,LOC107552729,LOC102199900 coding downstream 22672 2152884 ~ 2177072 (+)
ttll6 ttll6 coding downstream 47967 2178179 ~ 2188201 (+)
LOC107197898 NA coding downstream 61830 2192042 ~ 2195665 (+)
LOC103029234 LOC108413420 coding downstream 66784 2196996 ~ 2219483 (+)
G33788 NA non-coding upstream 1447 2123887 ~ 2124173 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding upstream 6090 2117567 ~ 2119530 (+)
G33748 NA non-coding upstream 37460 2087959 ~ 2088160 (+)
G33747 NA non-coding upstream 38089 2085643 ~ 2087531 (+)
G33737 NA non-coding upstream 95519 2028333 ~ 2030101 (+)
G33791 chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 non-coding downstream 462 2130674 ~ 2134078 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 146556 2276768 ~ 2281249 (+)
G33875 NA non-coding downstream 203531 2333743 ~ 2334085 (+)
LOC111192349 NA non-coding downstream 265101 2395313 ~ 2477487 (+)
G33882 NA non-coding downstream 299732 2429944 ~ 2430202 (+)
amz2 amz2 other upstream 68657 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 737601 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1133102 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1140239 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1701149 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1433818 3564030 ~ 3659132 (+)
G34309 NA other downstream 2040839 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2752344 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3562310 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 4116434 6246646 ~ 6258050 (+)

Expression


Co-expression Network