chmp2a (chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279)


Basic Information

Item Value
gene id chmp2a
gene name chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2131018 ~ 2134043 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259113.3
CCATAGGAAGTGTGGAGATGCGGAAGAGGGAGCTGCAGATCTGTTACAGGGAGACTGAGCCCCGCTCCCactgagacacacaaacacaaaacactttcAGACCCGCGGGACCGGAGACAGACAGCTATTCAACCTCGGGCAGTTTACCGTTTAACAGAAGACTCAAGATGGAGTTCTTATTTGGACGGAGAAAAACTCCGGAGGAGATGCTGAGACAGAACCAGAGAGCACTGAACAGAGCCATGAGAGATCTAGACAGAGAGCGACAGAGGCTGGAACAACAGGAGAAGAAAATCATAGCTGACATTAAGAAAATGGCCAAACAAGGGCAAATGGATGCAGTCAAGATCATGGCCAAGGACTTGGTTCGCACCAGACGATATGTTAAAAAGTTCATCATGATGAGAGCCAATATCCAGGCAGTTAGTCTCAAAATTCAGACCCTTAAGTCAAACAACAGCATGGCACAGGCAATGAAAGGAGTCACCAAAGCCATGGCCACAATGAACAGACAGTTGAAGTTACCACAGATTCAGAAGATCATGATGGAGTTTGAGCGCCAAAGTGAAATAATGGACATGAAGGAGGAGATGATGAATGACGCAATTGATGATGCAATGGGagatgaggatgatgaagagGAAAGTGATGCTGTGGTCTCTCAGGTGCTGGATGAGTTGGGTTTGAATCTTTCAGATGAACTGTCAGGTCTGCCTTCTACTGGGGGAAGTCTTTCAGTACCCGCTGGGAAGAAAGCAGAACCACAGCCAACTCTGGCAGATGCAGACGCTGACCTGGAGGAAAGACTGAACAACCTCAGAAGAGACTGAGGGACAGaagactttcagttaacaggaagaggaagaagtgAATAAACCCTTATAACACCTTAATGAAAAGTTGAGTGATTAAAGCAGTGGATAATGGAACACTGCAGAATTGGATCGCAGTGACATTTCGTGGCACAAGGCACACTTGTGTCAAAGTTTCTTTTgcgtatttctttcttttttttttctacttgaTATGTGCCGTATGTTATTCTACCAAACAAACGCTCCAATCAAAGATGTGGTCTCTCGCATGTTTTCCAGAGCATTCATGCCATgcagatcattttaaaataggGAAGTTTTGCTTGGAAAACTACTGAAGCACCACAGGAACCTTGTTTGATACTGCTGAGAGGAAAACACTaagtagtttattattataaagaagGCGTACAGGCTGTTATCCATTTAGTCCAAATGTTGATTGTAAACAGATTTTTATACAAGTAG

Function

symbol description
chmp2a Predicted to be involved in several processes, including endosome transport via multivesicular body sorting pathway; exit from mitosis; and late endosome to vacuole transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in nuclear envelope. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP2A (charged multivesicular body protein 2A).

NR:

description
PREDICTED: charged multivesicular body protein 2a-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12191 CHMP2A; charged multivesicular body protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259113.3 True 1283 mRNA 0.44 6 2131018 2134043

Neighbor

gene id symbol gene type direction distance location
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 10635 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 43451 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 64772 2056100 ~ 2066246 (-)
LOC103047336 LOC108444256 coding downstream 113843 1977614 ~ 2017175 (-)
xrcc6 xrcc6,LOC107709651,LOC107554059 coding downstream 226389 1898185 ~ 1904629 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding upstream 142714 2276757 ~ 2282984 (-)
dhx8 dhx8,LOC107706906 coding upstream 490895 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 1087304 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 1206569 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 1248732 3382775 ~ 3390578 (-)
G33804 LOC108444266 non-coding downstream 846 2128267 ~ 2130172 (-)
LOC111192348 NA non-coding downstream 47775 2080975 ~ 2083243 (-)
G33759 NA non-coding downstream 56412 2074335 ~ 2074606 (-)
G33732 NA non-coding downstream 154433 1976329 ~ 1976585 (-)
G33731 NA non-coding downstream 154910 1975829 ~ 1976108 (-)
G33833 NA non-coding upstream 58047 2192090 ~ 2192968 (-)
G33835 NA non-coding upstream 60244 2194287 ~ 2194607 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding upstream 152227 2286270 ~ 2287428 (-)
G33909 NA non-coding upstream 184565 2318608 ~ 2318897 (-)
G33911 NA non-coding upstream 199231 2333274 ~ 2334121 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 88715 2022071 ~ 2042303 (-)
G33675 NA other downstream 318396 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1729706 389434 ~ 401312 (-)
G33823 srcap other upstream 34980 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 60714 2194757 ~ 2196095 (-)
G33904 NA other upstream 169219 2303262 ~ 2309329 (-)
G34046 NA other upstream 1047125 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1649082 3783125 ~ 3789192 (-)

Expression


Co-expression Network