G51388


Basic Information

Item Value
gene id G51388
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2840410 ~ 2844319 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58562
TCTGGTTATGACTGTGTGAAAAGAGCTTGTTTTTAGAAACCATCACCTAAAGCAGCCAGTGACTGACCCAGACTGGAGGAGCGCATCAGCACAGAGGCACTTGAGAAATGAGGAATACTACATCAGATTAAGGCACCACAAACAACAGTTACAATATATCTTTGGAACAACAAAATTTATACACTTCAGGTTTACATACCGTACATTTTATTTTCAAATCTGTCTGTTTTGGGCAGCATTACCTCCTTTTCAATTAATTGCAATTTTAGATGATGAAATATATATAAAATTTACCATGAAATGCAAAAGAATATTTAATTGGAATATAATGAATACATAATATTATAATTGTTCAGGAAATAATATTGCACAGGTTACTGCTACAAAGGTGAGGGAGGGACGCTTTCCACTTACATCCGTCTATCTATCTATCTAGTTGGTGGATCAATAAACCATTTAGATAAAATTGGAAAGCCTTTATATTTGTTTAAAAATAAAAATTTAATTACATTTCAACATTTTTTACTAATAATAATATATGGGATTCTTAGAGGGTTGTTTAACAATGGATAGTTGACAGTGAATGCATGCCAAAAAAATCATATTTCAAGTATACGCTGTTCTGTTACATCAAAAAAAAAAATCTAATATGTAAAAGTACATTCAAATGCTTTCATATGTTTCAATCAGCAATAATCACACACAGCAGCTTTTAGAGATTACATTAAACACTGGGACATCCTTCAAATCAGCTCTCTGACTGATAAACTTCACTTCATTATATTACCAGACACAAAGACAGTCTGTACTAATTGTCATTTGACATTGTCATGGCATGTTGAGAATCGAGAGTAAATATGAACAGCCTCTGCTGCTCTCATGAATGATATAGTGAATTGTGCTGAAGCTATTATAGCTTCTGTGTTGTGATGTAGAGAAGATATTCTCTGTCACAGAGTACAACAAAATGCATTGCTAAATGCTAATCTAATCTCTGTAGTAGTTACTTCAATATTTTGGAAGGTTAATTAATGAGTTCCTGAGAACAGCACCTGAAATTAGCAGAGGTAATCAATAAGACTGGTGATAAACACACACACTTGTACACACACAATGAATGGTTGTGGAATGTCAGCTAGTTTGTGAACTCTTTGACAGGGCATTTTCCACATTAACAATTAGTAGCTATTCATTATGCCATAATAATCACTTGGTTAATTTTCAGCAATGACTGAGCAATTGTATGTCATATCTCAACTAAGTAACTCGGCCACATACCCAGGCAGTTGTGGCTGTGATTAGATGACTGAACGCCACAATCACAAGGCCAGGTCACAGAGAACAGGTTGTGAAAGTGGGAGGGGCTTTAGCTATGTGGGAGGAGCCCCTTCTTGTAGGCGACCACTCCTGCTGCTGTGGCCAGACCCAAGAAGGAAGACACACTCATAAACTTGAGGAATCCTCCAACCGATGGCAAGTTTCTTTCCCAAAATGTGGTGACAAACGGCCGGGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU58562 True 1515 lncRNA 0.36 2 2840410 2844319

Neighbor

gene id symbol gene type direction distance location
CI01000009_02799246_02827589 NA coding upstream 12770 2799031 ~ 2827640 (+)
CI01000009_02713403_02713914 NA coding upstream 126412 2712958 ~ 2713998 (+)
CI01000009_02674026_02678655 NA coding upstream 161664 2673802 ~ 2678746 (+)
CI01000009_02667840_02668883 NA coding upstream 171246 2667442 ~ 2669164 (+)
CI01000009_02656782_02657768 NA coding upstream 182587 2656557 ~ 2657823 (+)
CI01000009_02918681_02973307 KDM6A coding downstream 74362 2918681 ~ 2973952 (+)
CI01000009_03123137_03137452 CCDC80 coding downstream 277797 3122116 ~ 3138311 (+)
CI01000009_03145417_03159851 F5 coding downstream 301098 3145417 ~ 3159914 (+)
CI01000009_03164135_03169470 GPR161 coding downstream 317999 3162318 ~ 3170140 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S coding downstream 357888 3202207 ~ 3208984 (+)
G51470 NA non-coding upstream 16704 2822962 ~ 2823706 (+)
G51394 NA non-coding upstream 206548 2631777 ~ 2633862 (+)
G51384 NA non-coding upstream 219223 2554739 ~ 2621187 (+)
G51368 NA non-coding upstream 412088 2428122 ~ 2428322 (+)
G51354 NA non-coding upstream 415127 2415700 ~ 2425283 (+)
G51495 NA non-coding downstream 57155 2901474 ~ 2901723 (+)
G51496 NA non-coding downstream 57628 2901947 ~ 2902312 (+)
G51500 NA non-coding downstream 63047 2907366 ~ 2907596 (+)
G51501 NA non-coding downstream 65253 2909572 ~ 2909938 (+)
G51502 NA non-coding downstream 65664 2909983 ~ 2910239 (+)
G51274 NA other upstream 489924 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 938984 1897343 ~ 1919516 (+)
G51122 NA other upstream 1158444 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 1402055 1429873 ~ 1435328 (+)
G50920 NA other upstream 2070177 769841 ~ 770233 (+)
G51529 NA other downstream 217714 3062033 ~ 3062587 (+)
G53388 NA other downstream 2677923 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3015983 5931718 ~ 5943899 (+)
G53651 NA other downstream 3401245 6245564 ~ 6248392 (+)

Expression


Co-expression Network