psme3 (psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924)


Basic Information

Item Value
gene id psme3
gene name psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2276757 ~ 2282984 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259128.3
CATTTCTGAACGTCATCTCGGAGCGCGCGAGCACCTTGTGGCTGACAGTCAGCAGTAAAAGCCACACGTTGGGTTAGCGCTGTTCAGACAATCCGCGGCTTTTTATCGTTACTGATCCAGAAACATGTCTTCGCTTTTAAAAGTGGACAGTGAAATCAAGTCAAAGGTTGATGTTTTCAGAGAACGAATCACAGGAGAGGCCGAAGATCTGGTTGCAAACTTTTTCCCTAAGAAATTGTTAGAACTGGACCAGTTTCTCAAGGATCCTCTCATAAACATCCGTGAACTGAAAGAAATCCATTCTGAGATCAATCTGACTGTGCCAGATCCAATTCTACTTACAGACATCCATGACGGTCTTGAAGGGcaaaatgccaaaaaaagaaaacttgagGATGGTCCAGGAGATGACAAAGTTGGCGGGACCAAGGTCTATGTAATGCCTGGTGGAATGATGAAAAGCAACGGCAAACTAGTAGACCTTATTGAGAAGGTTAAGCCTGAAATCAGAACCCTCATAGAGAAATGCAACACGgTAAAAATGTGGGTACAATTGTTAATTCCAAGAATAGAAGATGGCAACAACTTTGGGGTTTCAATCCagGAGGAGACTGTGGCTGAACTCAGAACAGTGGAGGGAGAGGCAGCATCTTACCTAGACCAGATATCAAGatacTACATCACACGAGCAAAGCTGGTTTCCAAAGTAGCAAAATATCCCCATGTGGAAGACTATCGACGCACAGTTACAGAGATTGATGAGAAAGAGTACATCAGTCTGAAGATCATAGTGTCGGAACTGAGAAATCAATATGTAACTTTACATGACATGATTCTGAAGAACATTGAGAAGATAAAGCGGCCCAGGAGCAGCAATACAGATGCGCTTTATTAAGACCATCTATCTTCTCAACTAAAGCCCTTCCCTTCTCTCCACTGGGACTAGCTGGAACCTTGGACTGGTTCTAATGGaattacaaaaacattaaaaccaggcCAAGACCCACATGCTCCACCTGGCCTGGTGCAACATGCCGCTGATGATAGAACTGTAATATATGGTCACTGTTTTAAACCCTTTAAAGAACCCATTTTGATTTCCTAGTGGACAGTGTTAATGTATGGAGACATTTTGGCATTTTGACAtccagttttctttcttttttatttctcgttatttaattaaaagacTCTTTAAcaacaggttttcttttatCTGTCACAAAACCAAATGCAGTGTAGCACTTCTCTGGACGGTTCTAAggcattttacatgttttagatTTGTGGTGATGTCAGAGATGctcagtttctccagtttaaaaACTTTGAAGGTCTTATCGATGCTGTATTTTAATCAGTTGACTCTCTCCATCTAATATCAGTGTAGTTTAGAATGAAAGCTGTACTTGTGCATCATTTTACATACACTGAATTAGATGTTCATTTCTTGTCAATGAAATACAAGTATTttactttcttattttcttGTTCATTCATAGAATCACAAAGTTCCCAAATGCTTCTTATGGCTATTTTGTCCTGTTTCTTTTAAGAGTGATGCATTTTGCtgaataaaaacgtttttttttt
>XM_022668916.1
GTCGTTTTAATCTAAAGGCAATTAGAGAATTAAGGGAATTAGCTAACAGGAGGAAATGACAGCACAAAGGGTTGATGTTTTCAGAGAACGAATCACAGGAGAGGCCGAAGATCTGGTTGCAAACTTTTTCCCTAAGAAATTGTTAGAACTGGACCAGTTTCTCAAGGATCCTCTCATAAACATCCGTGAACTGAAAGAAATCCATTCTGAGATCAATCTGACTGTGCCAGATCCAATTCTACTTACAGACATCCATGACGGTCTTGAAGGGcaaaatgccaaaaaaagaaaacttgagGATGGTCCAGGAGATGACAAAGTTGGCGGGACCAAGGTCTATGTAATGCCTGGTGGAATGATGAAAAGCAACGGCAAACTAGTAGACCTTATTGAGAAGGTTAAGCCTGAAATCAGAACCCTCATAGAGAAATGCAACACGgTAAAAATGTGGGTACAATTGTTAATTCCAAGAATAGAAGATGGCAACAACTTTGGGGTTTCAATCCagGAGGAGACTGTGGCTGAACTCAGAACAGTGGAGGGAGAGGCAGCATCTTACCTAGACCAGATATCAAGatacTACATCACACGAGCAAAGCTGGTTTCCAAAGTAGCAAAATATCCCCATGTGGAAGACTATCGACGCACAGTTACAGAGATTGATGAGAAAGAGTACATCAGTCTGAAGATCATAGTGTCGGAACTGAGAAATCAATATGTAACTTTACATGACATGATTCTGAAGAACATTGAGAAGATAAAGCGGCCCAGGAGCAGCAATACAGATGCGCTTTATTAAGACCATCTATCTTCTCAACTAAAGCCCTTCCCTTCTCTCCACTGGGACTAGCTGGAACCTTGGACTGGTTCTAATGGaattacaaaaacattaaaaccaggcCAAGACCCACATGCTCCACCTGGCCTGGTGCAACATGCCGCTGATGATAGAACTGTAATATATGGTCACTGTTTTAAACCCTTTAAAGAACCCATTTTGATTTCCTAGTGGACAGTGTTAATGTATGGAGACATTTTGGCATTTTGACAtccagttttctttcttttttatttctcgttatttaattaaaagacTCTTTAAcaacaggttttcttttatCTGTCACAAAACCAAATGCAGTGTAGCACTTCTCTGGACGGTTCTAAggcattttacatgttttagatTTGTGGTGATGTCAGAGATGctcagtttctccagtttaaaaACTTTGAAGGTCTTATCGATGCTGTATTTTAATCAGTTGACTCTCTCCATCTAATATCAGTGTAGTTTAGAATGAAAGCTGTACTTGTGCATCATTTTACATACACTGAATTAGATGTTCATTTCTTGTCAATGAAATACAAGTATTttactttcttattttcttGTTCATTCATAGAATCACAAAGTTCCCAAATGCTTCTTATGGCTATTTTGTCCTGTTTCTTTTAAGAGTGATGCATTTTGCtgaataaaaacgtttttttttt

Function

symbol description
psme3 Predicted to enable endopeptidase activator activity. Predicted to be involved in positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be part of proteasome activator complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human PSME3 (proteasome activator subunit 3).

NR:

description
PREDICTED: proteasome activator complex subunit 3-like

GO:

id name namespace
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
K06698 PSME3; proteasome activator subunit 3 (PA28 gamma)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259128.3 True 1593 mRNA 0.40 11 2276757 2281258
XM_022668916.1 False 1497 mRNA 0.39 11 2276757 2282984

Neighbor

gene id symbol gene type direction distance location
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 142714 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 156374 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 189190 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 210511 2056100 ~ 2066246 (-)
LOC103047336 LOC108444256 coding downstream 259582 1977614 ~ 2017175 (-)
dhx8 dhx8,LOC107706906 coding upstream 341954 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 938363 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 1057628 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 1099791 3382775 ~ 3390578 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding upstream 1120963 3403947 ~ 3532389 (-)
G33835 NA non-coding downstream 82150 2194287 ~ 2194607 (-)
G33833 NA non-coding downstream 83789 2192090 ~ 2192968 (-)
G33804 LOC108444266 non-coding downstream 146585 2128267 ~ 2130172 (-)
LOC111192348 NA non-coding downstream 193514 2080975 ~ 2083243 (-)
G33759 NA non-coding downstream 202151 2074335 ~ 2074606 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding upstream 3286 2286270 ~ 2287428 (-)
G33909 NA non-coding upstream 35624 2318608 ~ 2318897 (-)
G33911 NA non-coding upstream 50290 2333274 ~ 2334121 (-)
G33910 NA non-coding upstream 79366 2362350 ~ 2367740 (-)
G33939 NA non-coding upstream 232303 2515287 ~ 2544111 (-)
G33836 LOC103393566,LOC105888730 other downstream 80662 2194757 ~ 2196095 (-)
G33823 srcap other downstream 99698 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 234454 2022071 ~ 2042303 (-)
G33675 NA other downstream 464135 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1875445 389434 ~ 401312 (-)
G33904 NA other upstream 20278 2303262 ~ 2309329 (-)
G34046 NA other upstream 898184 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1500141 3783125 ~ 3789192 (-)
G34214 NA other upstream 1553637 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 2688714 4971698 ~ 4995913 (-)

Expression


Co-expression Network