dhx8 (dhx8,LOC107706906)


Basic Information

Item Value
gene id dhx8
gene name dhx8,LOC107706906
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2624938 ~ 2637751 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259140.3
GACGAGAGCGACAGTCTCCACTCTTCACAACAACACAGCAGAGGCTGAAACATGGTGGATGTGGGAGAAGACGAGCTGAAACAGCTTGAGTATCTGTCTCTAGTGTCTAAAGTCTGTACTGAGCTCGATAACCACTTGGGGATCAGCGACAAGGACCTGGCTGAGTTTGTCATCAGTCTTGCAGAGAAAAACCCAACATTTGATGGCTTCAAATCAGTGCTGCTCAAAAATGGAGCTGAGTTTACGGACTCGCTCATCAGCAATCTGCTTCGTCTCATTCAAACCATGCGACCACCACCTGAACCATCCACAAGTAAAGGTGAGCCGGTTGTCAAGCcaaagagtgagaaagacaaGTTAAAGGAGCTGTTTCCAGCCCTCTGCAGACCAGACAATCCCACCACCAGGACCATGCTGGATGAAGATGATGTGAAGGTTGCAGCCGATGCAATGAAAGAGTTGGAGATGTTTATGCCCAGTGCTTGTGGACCAGACACAAAGAGCAGCAAACACAGATCTGAAGGTGCCAGCAGCAGCAAGAAAAGTCGCAGAAGCCGCAGTCGGAGCAGAGAtcgagacagagaaagagacagagatcgAGACAGGGACCGGGATAGAGACAGGGACAGGAGGAGACGTCACCGCTCACGTTCACGCTCCCGCTCTAGATCTCGTTCTCCAGTTAAGGAGAGAAGACGCAAGACCCGCTGGCATTCCCGCAGTCGGTCCAGGAGTCCTGGCCGAGGAGATCGTGGAGAAAGAGGAGAACGAGGGGATAGAGGAGATAGAGAACGAGGGGATAGAGGAGATAGAGAACGAGGGGATAGAGGAGATAGAGAAAAGGGTTCAGACCGCTGGAAGGACAAACATGTGGACCGCCCACCCCCAGAGGAGCCATCAGTGGGAGACATCTACAATGGCAAAGTCACCAGCATCATGCAGTTTGGCTGTTTTGTTCAGCTAGAGGGGTTGAGGAAACGTTGGGAAGGGTTGGTTCACATCTCTGAACTTAGGAGagagggcagagtggcaaatgTGGCAGACGTGGTCAGCAAAGGTCAAAGGGTCAAAGTCAAGGTGTTGTCCTTTACAGGCTCTAAGACCAGTCTCAGCATGAAGGATGTTGACCAAGACACGGGTGAGGACTTGAACCCCAACAGGAGAAGGAATGTTGGGGGAGAGGGTCAGGAAGAATCAGCCATGAGGAACCCAGACAGACCCACCAACCTTAATCTGGGTCATGCTCCTGAGGTGGAGGATGACACACTAGAACGCAAGAGACTCACCAAGATCTCTGATCCTGAGAAATGGGAGATCAAACAAATGATTGCTGCTAATGTCCTCTCAAAAGAAGAGTTCCCAGACTTTGATGAGGAAACTGGGATCCTGCCTAAAGTTGATGATGAAGAAGatgAGGACCTTGAAATTGAACTGGTGGAAGAAGAACCGCCTTTCCTGCGTGGGCACACCAAACAGAGCATGGATATGAGTCCTGTGAAAATTGTGAAGAACCCTGATGGCTCACTGTCTCAGGCAGCCATGATGCAGAGTGCTCTGGCTAAAGAGCGAAGGGAAGTGAAGCAGGCACAGCGGGAAGCTGAGATGGACTCCATCCCCATGGGCCTCAACAAACACTGGGTCGACCCTCTGCCTGACACGGATGGAAGGCAGATTGCCGCCAACATGAGGGGCATCGGCATGATGCCCAATGACATCCCTGAGTGGAAGAAACATGCTTTCGGCGGCAATAAGGCCTCATACGGAAAGAAGACACAGCTGTCCATCATTgagcagagagagagtctgCCCATCTACAAGCTTAAAGAGCAACTCATTCAGGCTGTTCATGATAACCAgattctgattgtgattggagaGACGGGCTCTGGGAAAACCACTCAAATCACTCAGTACCTAGCTGAGGCCGGATACACAACACGTGGGAAGATAGGGTGCACACAACCCAGAAGAGTGGCTGCCATGTCTGTGGCTAAGAGAGTGTCTGAAGAGTATGGGTGTTGTTTGGGACAGGAGGTTGGTTATACCATCCGTTTTGAGGATTGTACGAGTCCGGAGACTGTCATCAAGTACATGACGGACGGTATGCTGCTGAGAGAGTGCCTGATTGACCCTGATTTGGGCCAGTATGCCATCATTATGTTGGACGAGGCTCACGAGAGAACCATCCACACTGATGTACTCTTCGGCTTACTTAAAAAGacAGTACAGAAGCGCACAGACATGAAGCTCATTGTGACATCTGCTACACTGGATGCTGTGAAGTTCTCACAGTATTTCTATGAAGCCCCCATTTTCACCATCCCTGGTCGTACCTACCCTGTAGAAGTTCTATACACTAAAGAACCTGAGACAGACTACCTGGATGCCAGTTTAATAACGGTCATGCAGATCCACCTCACAGAGCCTCCAGGCGACATTCTGGTGTTCTTGACGGGTCAGGAAGAAATCGACACGGCGTGCGAGATCCTTTACGAGCGAATGAAATCACTCGGACCTGACGTTCCTGAGTTGATCATTCTGCCTGTGTACTCTGCCTTGCCCAGCGAGATGCAGACCAGGATCTTTGACCCAGCTCCACCTGGAAGCAGAAAGGTGGTCATTGCTACAAACATTGCTGAGACTTCACTGACCATTGATGGGATCTACTATGTGGTGGATCCAGGTTTTGTCAAGCAGAAAGTGTACAACTCCAAAACAGGCATTGACCAGCTAGTGGTGACTCCAATCTCTCAGGCCCAAGCTAAGCAACGAGCAGGCAGAGCTGGTAGGACTGGACCTGGGAAGTGCTACAGACTGTATACAGAACGTGCGTACAGAGACGAGATGCTCACCACCAACGTACCTGAGATCCAGAGAACTAACTTGGCCAGCACTGTGCTTTCTCTCAAGGCTATGGGCATCAATGATCTGCTATCATTTGACTTCATGGACGCCCCTCCTATGGAGACTTTAATCACAGCTATGGAACAGCTGTATACGCTAGGAGCTCTGGATGATGAGGGACTGCTCACTCGTCTTGGACGCAGGaTGGCTGAGTTCCCTCTGGAGCCCATGTTGTGTAAGATGCTCATCATGTCTGTCCACCTGGGCTGCAGTGAAGAGATGCTGACCATCGTGTCCATGCTCTCTGTGCAGAACGTTTTCTACAGGCCGAAGGACAAACAGGCCCTGGCTGACCAGAAGAAGGCCAAGTTCCACCAGCCTGAGGGAGACCACCTGACCCTCCTGGCTGTGTACAACTCTTGGAAGAACAACAAGTTCTCTAATCCTTGGTGCTATGAAAACTTTATTCAGGCACGGTCTTTGCGGCGTGCACAGGATATCCGTAAACAGATGCTGGGCATCATGGACCGaCACAAATTGGACGTATTCTCTTGTGGCAAGGCCACAGTTCGAGTACAGAAGGCAATCTGCAGTGGTTTCTTCCGTAACGCTGCCAAGAAAGACCCTCAAGAAGGTTACAGAACCCTCATTGACCAGCAGGTGGTTTACATCCACCCTTCCAGTGCTCTGTTTAACCGCCAGCCTGAGTGGGTGGTGTACCATGAATTAGTCTTGACCACCAAAGAGTATATGAGGGAGGTGACCACCATTGACCCCCGCTGGCTGGTGGAGTTTGCTCCAGCCTTCTTTAAAGTGTCTGATCCGACTCGCCTCAGCAAACAGAAGAAACAGCAGCGCCTGGAGCCTCTGTACAACCGTTACGAGGAGCCCAACGCATGGCGAATCTCCAGAGCTTTCCGCAGGCGGTAGAACACTCCTACAAGATCTCTATAGACTGCCTTTGTCCAGTACTGCTGTTAAGGGGTAGATCCACACCTACCTACACAGTGAAAACAGGCTGGATTGCTCCAACACGAATGTTAAAGATTTGGACCCTTTCAccatcatttttttcctttaactaTTTATCGATTTAAGGGAAACTTCTCAGTTTAAAGAAAACTTTAGATTTTGAATAAACCAACTTACGACATGTtgtaaattattgtaaaatgtttcagattaaactttttttaaaggtctttATGTGTAAAAGCATGTAGATTTAATCTGAATCTTTAGATCTGAATTTCAAATACCTCCTTACTCCCTATATAGTGAACGCAAGTCATAAAACGACAACATTTATAAGCAGATAGCACTAGATTTCAGATATCAACATGTAAATACTGTTCCATTACAAATATAGAATGCTCTGTTTAGATTGAGAATCCATAATTTTGTTCCTTGCATCGCACGCTACAGAGATTACAGTGTAATTTGGGATTGGACCCCTTTCCAGCTTCTTGGTGGTTTTAAGGTCTCACTGAGGTACTATTGAGGTACTATTGAGATACGTTAGAGGTACAGATGGCCCATACATTGCTAGCATGCTCATGAAAGTGTTTCCATCTAGGtgaggtttt

Function

symbol description
dhx8 Predicted to enable RNA binding activity. Acts upstream of or within cell division; mRNA splicing, via endonucleolytic cleavage and ligation; and primitive hemopoiesis. Located in nucleus. Is expressed in brain; midbrain; and pronephric duct. Orthologous to human DHX8 (DEAH-box helicase 8).

NR:

description
PREDICTED: ATP-dependent RNA helicase DHX8 isoform X1

GO:

id name namespace
GO:0070054 mRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259140.3 True 4430 mRNA 0.49 23 2624938 2637751

Neighbor

gene id symbol gene type direction distance location
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding downstream 341954 2276757 ~ 2282984 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 490895 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 504555 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 537371 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 558692 2056100 ~ 2066246 (-)
LOC111192418 NA coding upstream 583596 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 702861 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 745024 3382775 ~ 3390578 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding upstream 766196 3403947 ~ 3532389 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding upstream 907682 3545433 ~ 3555219 (-)
G33944 etv4,LOC107743788 non-coding downstream 21749 2574387 ~ 2603189 (-)
G33939 NA non-coding downstream 80827 2515287 ~ 2544111 (-)
G33910 NA non-coding downstream 257198 2362350 ~ 2367740 (-)
G33911 NA non-coding downstream 290817 2333274 ~ 2334121 (-)
G33909 NA non-coding downstream 306041 2318608 ~ 2318897 (-)
G34036 NA non-coding upstream 422618 3060369 ~ 3085406 (-)
LOC111192350 NA non-coding upstream 469451 3107202 ~ 3189436 (-)
G34101 NA non-coding upstream 753878 3391629 ~ 3399113 (-)
G34159 NA non-coding upstream 1090891 3728642 ~ 3728960 (-)
G34166 pnpo non-coding upstream 1140149 3777900 ~ 3781741 (-)
G33904 NA other downstream 315609 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 428843 2194757 ~ 2196095 (-)
G33823 srcap other downstream 447879 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 582635 2022071 ~ 2042303 (-)
G33675 NA other downstream 812316 1810586 ~ 1812622 (-)
G34046 NA other upstream 543417 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1145374 3783125 ~ 3789192 (-)
G34214 NA other upstream 1198870 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 2333947 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 2617868 5255619 ~ 5362486 (-)

Expression


Co-expression Network