spata20 (spata20)


Basic Information

Item Value
gene id spata20
gene name spata20
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2639255 ~ 2698036 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259141.3
ATAGCTCCAGTGGCCTCTGGTGGCGGGTTTGTGAACTGCACGCTGCTTCACAGTCAGTGCTGTGCCACAGTGGGCACTCCAGGCGGGACTGTGCTCGGGGTTAGGATGCTCAGACTGCTCTGGACTCGTTCCCCCTCTTCTTTCAGACGCTTCGGACCCTCCAGGCTGCTTAGTGGAGCTTTCTCGAGGAAAGACAGAGCTCGTACTCGCACTCTGTTTAACAGACAGGGCTCTGAACCCACGCCCACCCAACACTTTGACAGCTACCCTAGACTTCTGAATTTCAGGTCGTCCCAgcacagcagcagcttcagGGCACCTGAAGCAGCCTGCTTCAGTATGGCATCAGGAAGTGATGGTCAAGAGAGTTTATCTCCACCGAAACACACCAACCGCTTGAGGAAGGAGAGGTCCCCCTACCTGCTGCAGCATGCTCACAACCCTGTAGACTGGTTTCCATGGGGCCAGGAGGCCTTTGATAAAGCAAAAAGTGAAGACAAGCCCATTTTCTTGTCAGTGGGTTACTCTACTTGTCACTGGTGTCAcgtgatggagagagagtcGTTTGAGGATGAGGAGATTGGGAAGATCCTGAGTGACAACTTTGTGTGTATAAAGGTTGACAGGGAGGAGAGACCTGATGTTGATAAAGTCTACATGACGTTTGTACAGGCAACTAGTGGAGGTGGTGGCTGGCCGATGAGTGTGTGGCTTACTCCCAGTCTTAGACCATTCATAGGGGGCACATATTTCCCTCCAAGAGACAGCAGCAGAAGACCTGGGTTTAAAACTATACTTCTGCGCATTATGGAACAgTGGCAGAATAACAGAGAAGCACTGGAGTCCAGTGGGGAACGGGTGGTGGAAGCTCTACGGAAGGGCACATCCATCTCAGCCAGCCCAGGAGAATCTCTGCCGTCAGGCCCAGATGTTGCTAACAGATGTTTTCAGCAACTGGCCCACTCATATGAGGAGGAGTATGGAGGATTTCGAGATGCACCCAAATTCCCCACACCAGTGAACCTGCTGTTCCTAATGTCATTCTGGACGGTAAATCGTTCTTCCGCTGAGGGAGCAGAAGCATTGCAGATGGCTCTTCACACTCTCAGGATGATGGCCTTAGGAGGAATTCATGACCACGTGGCTCAGGGTTTTCACAGGTACTCCACAGACTCCTCTTGGCATGTGCCCCACTTTGAGAAGATGCTGTATGATCAGGCCCAGCTGGCAGTTGCGTACATCACTGCATACCAGGTGTCTGGGGAGCGCCTATTTGCAGATGTGGCCCTCGACGTGTTGCAGTACGTCTCCAGAGACCTTAGCCACAAGTCTGGTGGCTTTTACAGTGCTGAGGATGCAGACTCACTGCCCACACCTGAGTCTgctgagaagagagagggagcctTCTGTGTGTGGACAGCTGGGGAGGTCAGAGATCTGCTCTCAGAAACAGTGGAGGGGGCGACTGGTGGTGCGACACAAGCTGACATCTTCATGCATCATTATGGTGTGAAAGACCAAGGCAATGTCGAGCCAGAACAGGACCCGCATGGTGAGCTACAGGGTCAGAATGTGCTGATAGTGCGCTATTCAGTGGAGCTCACTGCCGCTCGTTTCGGCCTCAGCGTGGACAGACTGACTGAAGTGCTGGCCAGTGCCAGGGCCAAACTGGCCGAGGTGCGCAGGGAACGCCCTCCACCTCATCTAGACTCAAAGATGCTGGCCTCCTGGAATGGTCTGATGCTGTCAGGGTTTGCTCGGGTTGGCGCTGTGTTGGGGGACAAGGCGCTGCtacagagagcagagcaggCTGCACAGTTTCTTCAGGAGCATCTGTGGGATAAAGAGGGACAGCGGATACTGCACTCCTGCTACCGAGGAGACGACATGGAAATGGAACAAACAGCCTCGCCCATCGCAGGCTTCCTGGATGACTATGCCTTTGTGGTGTGTGGTCTCTTGGACCTCTTCGAGGCCACACAGACTGTGCAGTGGCTGAAATGGGCTGAGGAtctccagaacacgcaggaCCAGCTCTTCTGGGATGCCCAGGGCAGTGGCTACTTCTCTAGTGACCCATCAGACCCCACCTTGCTGCTGTCCCTCAAACAGGaTCAGGATGGTGCAGAGCCCAGTGCAAACTCTGTGTCTGCAATGAATTTGCAACGCCTGTCCCACTTGACGGGCAAACAAGAGTGGATGCAGCGCTCTGAGCAGCTGCTGACGGCCTTCTCTGATCGGCTAACTAAGGTGCCCATCGCCCTTCCTGACATGGTCCGAGGCCTCATGGCACATCACTACACTTTAAAACAGaTAATCATCTGTGGCCAGCCTGATGCAGAAGATACAGCCAGTCTGATGGCCTGTGTTAACTCCCTGTTCCTTCCCTATAAAGTTCTGATCCTGGCGGACGGGAATACAGAAGATTACCTCTACCAGAAGCTGCCCGTCCTCTCCTCCCTGGTTCAGCAAGAAGGCAAAGCCACGGCGTACGTGTGTCAGGACTTCGCCTGCGCCCTGCCTGTTACCTGCCCTCAGGAGCTCAGGAGGCTGCTGCTGGAGTGACACCATGGGTTCTTACGTAGCCACATTAGACTGCATAGATATCTCATAGAACTGTATGGGTGCGAGCAGTCACCAGAAACTCTGAATCATAAGCTGAGGTGCACTTCCCTTGAACCTacgttcagttcagtttatcagaaacacctgccATGTAGGTGCACGTTAGGTATACTAGTACTGACAGTGGCtgatctgttgctgcacagtttatcaGTAGCCATTTAACAGGTCCCAGAAGGTCTGCAGGGCCTGTTACGCTCAAGCAGTCTAAGTACACACTAAAATGTCACCACCAGTGTTGGTTTCACTGCACGCACAGCCcacaaacactgttttaaaatcaggTAAAAGATCCCAATAGGGCAATTAGGAGAGGTTTAACGATGGTAGATGGATGATGGCAACATGGAACAGTGACAGGACATTCTACCAGCATTTTATGGTACTATTTTACCATAGTAGCAGGTAATGGAATGTTCTGTACAGAGATACATTTTGCAAACCTTTGCTTTTACCTTTGCTCCCTTTGGAAACATTACTGTGTGTTTGAAAGACTTTGTAGGATAAAGGATTGGAAAACACCACCTCACTAAGAAAAGTGTGGAAATATGAGGGCAATAAAAGTAGTCCCATTTGCTTAGATCATAGTTTTCAAAAAGTTCAGTTGTAAAGCAGTAAGCTGTGGTTCTGTGTTGGCCTCTTATTACATGCAATTGTCACTTATGAATTTGAGAATTTGATCTGGACCTTATCTGGAGTTGCCCTTCTTCTACACAGGCAGTGTACATCCATCATTTTTGCCAACGAAAATTTGTTTTGTGTGATTTAGGCAAGAGGCGGAGCCTGTGTACCACATATAATAAGCATGATGTGACCCACTGACACTTCCCAAGTAATATTCCTGCTCTTTTCAAATGTTGGCTCACTCAGACATTACCCAGACTAAATGTTGTACTAGGGGGCTGGCAGGATAAAGCCTGGGactgatatattgtgcagcaaCATATGTACAGCTTACAGTTGTGACAAAGTGTCCCAACAATAAACATGGTAGGTATACATGATGGGCAGAGTgaatgggtaacactttatggtAAGGAACACGATTTAGAGAAGTTTTAgggtcttgtttttttgttcaataaCGCCAAAATTAGACATTTATCATTGATTAATTCACTAGAAATTTAGCTTCACTCATCATGTCCGTTATTAGTACACAATTAACTTACATAATTATATCATTAGCTATCATTTTAGTTTTCTGAACTACAAGGCTAAATTAAGAACTATTATATGTAGAATCAATCATATTCTTATATGGAACAAATACTGACATAACGGAGCCAGCTTATCACAAATATCTCCATTCATATTGTGTCGGTGATaattggaccaatagaaatgtgcCAAAATAACTTTGGATTAAAAACTTTTTACaatgacttccattaaaaaataagaacattttgTGTATATGAGCAATTCTCAATTCTTACACAACtagtgggttttttttaaacagcatcaTTTAAAGAGATGTGCAAGCTGTTAAGCAGAATTAAAAGCCCCCTTCAACCTTacaagcagcttttatattaaacatggtgCAAACATTACATCCATTAATTTCacataaatataagaaaaagtgtaaaatacgAAAATCATTGTCACataaaaagttatttacagCTTTCCGACAAAAGCAAATGTGTATCTACTGAGACTTCCTGtggcagcttctatatgtaaagatgtacacattttaaaaatggctaaaaacagtaattcaattaatcaaataattcaGTTAACCTCCCAGCCCCACTCTATAGTCTATGATGCAAATTGACTTAAACAGTACTTACGTATGATGAGTAGAACATCTCTATAGAATATGGAAAACTTCTGGATGTATTAGTGACTTTAAAACTCTTAATAACCCAATAGTCTTATATAAAGCAATTCACTTTGCACAACAAGTGATAacagtgtttattgtgttttattgcaaCTAAAAAGCcatgtatttgtgtttattatgttaGAGACTTCCAGTTTTGTGTTACTAAAGGTCATGATGAATGAAGCtagttaaacatttagaaatgtCTAATTTAGGCATTAATTAGCAACTGCTAAGACTAAATTGAGGTTAATAGGTGCAGGTACAAACTAAATGCACTTGTAACTGACAGCATAGTAtatttccttcctttcttttctgATCATGGCTGAAATGTACTTCAAGACATATCTGGTCTATAGAAAGATTGTACCTCATGTGCACCATTATAGTAGAAATGAACTCTGAAAGTGACCACCCTGTAGTGAGAGCTTCCTGCACCCCAAAACCCCCATTGCTGAAGTCTTATGGAGCTCAAATTCTGTGAAGTTGACTAAATCATCTCCTGCATTTCTCCTGCGACTGAATTGAGTGCTATAGAAAAAAGGATTGGGCTGAAAAGTATCAGCATGTCCTTCTAAAGCTGTCCATCCACTGTGAATGATCAAACCAGCCCGCTGTTCTGCACACTAGATCTCAGTATTTAAAGCACTGAAACATACAATGTATGCATATGTTGAGCTCTAGCTTGACTGAATATAGTAAATACTCATTGAGTAACATTG

Function

symbol description
spata20 Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human SPATA20 (spermatogenesis associated 20).

NR:

description
spermatogenesis-associated protein 20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259141.3 True 5199 mRNA 0.45 16 2639255 2698036

Neighbor

gene id symbol gene type direction distance location
etv4 etv4,LOC107706904 coding upstream 19884 2574538 ~ 2619371 (+)
meox1 meox1,LOC107577625 coding upstream 122800 2505355 ~ 2516455 (+)
sost LOC108414158 coding upstream 249226 2384374 ~ 2390029 (+)
dusp3 dusp3,dusp3a,LOC107669488,LOC107552769,LOC107582744,LOC107666929 coding upstream 271456 2352013 ~ 2367799 (+)
arl4d arl4d,LOC107552768,LOC107706901 coding upstream 321957 2312748 ~ 2317298 (+)
cacna1g cacna1g coding downstream 32448 2730484 ~ 3069831 (+)
uts2r uts2r,LOC108426413,LOC108273405,LOC107754100,LOC107689263,LOC107552777 coding downstream 428346 3126382 ~ 3182179 (+)
LOC103043460 LOC108426414,LOC108274136,LOC107754112,LOC107743783,LOC107566616,LOC107691214 coding downstream 624928 3322964 ~ 3342690 (+)
cdk5r1 cdk5r1,LOC108426451,LOC103047129 coding downstream 694272 3392308 ~ 3399142 (+)
tbx21 tbx21 coding downstream 1030380 3728416 ~ 3746114 (+)
G33950 dhx8,LOC107706906 non-coding upstream 4233 2628670 ~ 2635022 (+)
LOC111192349 NA non-coding upstream 161768 2395313 ~ 2477487 (+)
G33882 NA non-coding upstream 209053 2429944 ~ 2430202 (+)
G33875 NA non-coding upstream 305170 2333743 ~ 2334085 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding upstream 358006 2276768 ~ 2281249 (+)
G33959 NA non-coding downstream 62872 2760908 ~ 2761515 (+)
G33987 NA non-coding downstream 518968 3217004 ~ 3218342 (+)
G34073 NA non-coding downstream 621678 3319714 ~ 3319922 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding downstream 684952 3382988 ~ 3390577 (+)
G34105 NA non-coding downstream 847417 3545453 ~ 3557491 (+)
amz2 amz2 other upstream 582292 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 1251236 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1646737 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1653874 983167 ~ 985381 (+)
LOC111192417 NA other upstream 2214784 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 865994 3564030 ~ 3659132 (+)
G34309 NA other downstream 1473015 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2184520 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 2994486 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 3548610 6246646 ~ 6258050 (+)

Expression


Co-expression Network