LOC103036928


Basic Information

Item Value
gene id LOC103036928
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4088103 ~ 4097955 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259143.3
AAATCTTATACTGTGACTAGTCTCTGACTGAAAAGTCTGTGACTTGTCATTAGATGTGAGATGACAAGTCCTCTAGTGTATGGTTAGCATAAATAAGAGAAAACACAAGAGTTTTATGTTGTTGAGGGCTGTGTAAAATGGCGTGTTGTGGTCTAGAATCAAACATGGCGTCTGTTAAGTCTATCCGGAGCTTTTCAACagtaactgctgctgctgtgggcTGGGGCTTATAAACAGTGTTATAAACAGCGCTAAAGCTGCAGCACGGGTGTACTGGGGGCTGCTTAGAGCACCAGTTACAGTCAGGGGTGAATTAAACTACAAACGAGGCTTGTTTGTGGGGGGACAGCGTGTTTAAAGTTGGAGtttgaggaggagaaggagagggtGATGAGAGTTTCAGGTAGCTATGGGATCCATATTCATCCGCTCTGAGTTCCTGCTTCTCTCACACACGCAGCAGAGGAGCCCAAAGTTACCCGGATGGAACTGTCATGGCCGCCGTCACTGACCTGCCAGTGTGAGGAGAAAAGAAAGttactTGATAGAACATGGAGGCCACTTCAGATGACCCACCAGAAAGCTATGACCGCAGCAGGGATGTTGATGAAGATGTCACCATTGTCCACACATGGCCTCCTTCAACAGAACTTGCAAATCAGACATCAGAGACAGCATATAATGAAGACAGTGACCAAGATGAGACAGAGTCTGAGGAGACAGGTGCTGATGATTCTCAGACAGAAGGCAAAGCCGCTGAGAAATCACCATGTAAGATGCAACAGGGTGCAATTTTCTCTGGGAAAATCCTGAGTTTTTGCTGCTCTGAATGTAAAGGTGATACCACTTATAGCCCCAATGACTTGCTGAAACATTTTCAAGTAGCTCACAGGGGAACGCTCCCAACATATCCCTGTGATCTGTGCACCTTTGTCACCAACGAGTTCTCTTCTCTCCAGCGGCATCGCATTGGACATCGTGACACTTTGGTCACTTGTGAGATTTGCAACGATGGAGTACAATACTCTCTACTTTTACTCACCAGGCATTTTATTATGTGCCATAGCTGTAATGGACTGTTTCGCTGCAAAAAGTGTGACTTTTCCACCAGAGATGCAGGCACCTTTGTTCAACACATCCATCATCATAACGAAAGTGGCACCAAATGCGAAAGGTGTCCACCCCTGAGTCCGACACAAGGGAAGGCTCAGTCTGGGACTTTCCCTTTCACCTGTCAGTTTTGTGGCTATGGTGCTGCACGGAAGGAGTATCTAAATAAGCATCTGTCTATGGCCCACAGAGATGAAATGGATAAAACAAACAGGAGGAAGTCAGTGGAGGACAACGCTGGAGTTAACTCCTCTGGACTGAAGCTGCTGCtcaaaaaaaatgctgctgctgctggaggatcCAGGGAATCCCAGTGGATGTCGAAGCTGAATGCTCTATCTGGTGTAGGTCTGCTTGACCACAATGGGAGATTGTTAAATCCAGAGAAGACACTAGAGGAAACCCAGCAGTTTCTTGAGAGAGCTGTCGGCGTGAAAAAAGAGAGTAATATGTGGACTAAAAGTCCACTCAAGAGTGAACCACAATGTTCTTACCCTGTTACACCAACTACTGCACAGCCAAAGATACAAGAGAACGAACTCAGTTCAGGATCTGGGCTTGTAAATCCAAGCAACAATAATGGACTGACTGTTCTTATGGTCAAAAACAAAATCTCCATCCCTCCTAACTGTACCACAAAAGTCATGGGCTTTAAGATGGTTGATGGTAAGAAGCATTTGGTTTTAAAAGTCATACCAACCTCTACCAAAAATGAGGTGTTGCTTGCTGATGCCCCTGAGGATGATAAAAAGACACTTAACTCTGGGAAAAAGACAGATTTCACTGCTTCAATAAAACTAGAGGCAAATGACATTGAAAGGGACACTGGGGACCAGTCACTTTTATTGCATGAACATGAAGCAAACAGTATAGCTGCAGATCAGGTTGGTGATGAAGTTCTTGAAACGTCTATCCAGTTGCCAACCCCTCGATCAGACTCACATTTTCGAGACTCAGTTTCCACTATGACCAAAGAGGCTTTATGTTCCACAAACCAGAACAGTAGTCCAGATAGGACGTCACAGCATTACAATCATGAGCTTCCTGTTTCCAATCTATCTGTTGATGAGTCTCAATCAACAAATTCCCAGAAACAAACTGCCACACTCCCAGATGGAACTGTAGAAGAGGTCATGAACACAGATTTGCTCAGGGTGAAAGAAGCTTCATCAGAATCTCTGATCAAACAAAACTATGACGTAGATTCAGAATCTACAGATGAGCCCACATCCCCAGAGGTCATTTCTAATGTGAAATCATGCGTGTTTCCTGTATCAGCCAATGATAACCAACCATCTGCCTTAATCCTTAATTGCATTGCAGATGATGCCACTCCCACTTCTGTCTCAGGCGAGTCTCCTGGCCAGATGGGTCATTTAGTGGGTCATAAAAATTGTAAAGCTGAATCCCCTGAAGCTTCTTCTTCATGTGAAAGAATGACTGAGCAGAGTTCACCTCAAACTCCTGTAAAAAAGAGCCCAATTTCGGTTTCAGCAGAGAAACAGTCCAATCCAACAATTGTTGTTGATGAAGAGGATACTTCATTATTAAACAGTGCTGCAGCCACAGCCCCTTCTGAATATTTAACAAATGAAAAGAGCTTTCACAATTATTCACTCATTGACATTAATCTGCATACTGATTCCTCCTCTGGTAAGGAACTAGGCTCAGATAATACAGCTGTGCAGTGCAAGTCCTCTGTTGTAACTCCAAATGGAACCAGTTCAGGTGAGTCCCCAGTTCCTACAGACAGTAATGTGGATGCTGAAACTTTTCAAAATTCCCCAAGTCAGGAGGTCTTCAGTTTTCACAATTACTCTAAAGACTCTTTTGGCAGTTCCCCTGGTTCACTGGAAGCTGATAACCAATCCGCAGAGGACTTTGAGGAAGAGTGTGAAGAAGATTTTGATGATCTCAAGCTGTCTTCGGACTGGAGCTTAACACTACCTGACTCTCCACCACTTGAACAGTCTGAAGAAGAAAATGTTGGAAGTGGTGGAGAAGGTAGTGCAGGTGGTGATGTAATTTTTGCAAGTGAGAAGAAAGACCTAGAAAGAGTGTCAGATAGCGATATAGAAGTTGATGAGTGCATAGCTACTGTCGATGAGGAGCTGTCCCTTCCATTGTCACGAGAGGCAGGAGAAGAATCTGCATCTCTGACAGAGGCTGAAAAGCTAGCAATGAAGGGTGTTTCTCCTGCGATCGAGAAGGGACCTGCAACTTTGAGTAATGCAGCTGTTCTGGGCAAAATACTTGAAAAGCATTCAGATGCTATAATCAGCCAGCAGCTCGAGAAAGAAAGGATGGTATCTTCAGCTGCTACGTCAGATGCTATCAGGCCTACCAAAACAACACTTAGGATCCTGCAGACTCCTGAGGGAAAACAGCAGATGTTCCTCCAGACCACAGAGACTCCATATGCTGTGCCAGTCCAGCTGCAAAGCAGTCCTGGGTTCAAGCTTATTACGAAGTCCTGTGCTTCCAAAGTCAATGTGTCCTATATGAAGCCAGGAATTGAAAGGCCTAGCAAAGGTACAGCGTTATCTTTTACTTTAAACGGAGGCAGAATTGGAATGTCGGCTCAAGGTTCAAGCACAGAGGGCGAAGGTTATGCATCTCTCCTGCAAGCAGTAAGCAGCAGTGGAGGCCGCTACTTCGTCAATGCCTCCTCCCTGAAAGGGCCTCTTCTCTTATCAAGTGCTGTGAAGCAGCCACTGTCAGGAGAGCAAACAACAAATTCGCAACAACCAACATGTTATTTAGTTCAAAGACCGCTTCCTGTTGCACCAGTAAGCAGTGAGTCCACCAGTTCGACCAAAACTGTGCTGACCACTTGCCCAGTACTGGCTATGCCTGTGAACTCTGAAAAAGCAGCTGCTGTGCAAACTGGACGGCAGGCATACTTGTTAAGATACTTCTCTCCAGCTAAGTCAGGGATACTGCTTAATAGCTCAGATGGGAACGGCAGCCATGCGAATGAAGAACGCAAAAACAGAGTTTTCCTCAAGGTTATAAGAAGTCCTAATGGCACAAGGTTCCTCCCCACTGCCTCTCCATGCACATCAGCCAAAAAACCTATTTATGTGGCTGCAAGTTCTCTCCAATCACCATGCTTTCTTATGTCCTCAAATAAAGCCTTTACCAGTTTGTCAGCAGGGCTGAAAACCTCCACTACTCCTAATCTCATTCCACCAAAGCTCAAAAACATTTTACCCCAATCAGGCACTGACATTAAATACCAGGACGAGGATGGTGTTGTGATCCAGAAGTCTTCGATGATCCCCATGCACGTTCGCCAACGTAGCCAACGGAAAAGAAGGCGAAGGGCTGTGTTTGAGGAACAGTTTGGGATCTCTTCTAAAACACGGAGAATCTCAAGCAAGTCACCTCCTGAGAAAGAGGTTTCCCCACTGTGGGAGCCTGCAGCAAAAGATGTTGAGAGAACACTTAGGCTCTCCCCCTTCAGCCCACTTCAGCAAATCAAATGCCCTCGTCAGAACCAGCCGGTGGTGGTGCTGAACCACCCTGATGCTGATATTCCTGAAGTGGCAAACATCATGAAATCAGTCAACAGGTACAACAGTGAAGTTGTGAAGGTCTCATTGTCCCAGAGTACAGTCAAGGCCCTCTCTGAGTGGAGTCTTAATGGTTCCGAAGGCACACTCTCAAAGCCAAGTGCAAGAGGTCGGCCATTAGAACCCAGTGTCCGAGAACGTTTCAtcttaaaactaaaactgaaaaagaaaagcagacGCAAATACGAGGTGGTGAGGTTGGCCTCCTCCACAGAGCAGATGCCCAAGTTCAGTTGTTGGTTTTGTGGCCGAGTATTCAGCAATCAAGAAGATTGGATCGGCCATGGACAGCGGCATCTCATGGAAGCTACAAGAGACTGGAATAAGCTGTTTTAACTTTGTCACGAGGCCCTTTGTATGGGTCAGAATCCGTCCCCTAATGTAGAAACGAGACTGATAACTGATTCtgatttctatttcttttttaaaaaaatagtacagtTAGATACACTTAAGctgtcaaaattattttttacatagatATCCCTCCAGAAGTTTTTAAATGGGTATAGTGTAATAGACAGAGTTTGGTACCTGAAACCAATTTGTATGTAAATAGTTTTAACCCGTGTATATTTAAATCTAAACCCTCGCGTATGTACAGAATGGAACTGTGAAAACTGGACACACTGTACGTTTATGGTGCATGCAAAAAAAGATCATCACTGGTATAAAAAGCAGGTGCTGTCTGTGATGGACCTCTTTCAATGCAGTCAGTTAACAAATTACTCAGGTAATTTCATAATATTCAAAAGAACAGTCCAGTTTGTTAAGAGATCTTTTATATATTAGCTCAGCAATTGTGTTAAAAGAGGCGTTCTTTACAGTTTCAGTTGTTTAGGTTGGCTGCATTTATTATCCATTGCTAGAGGTCTCTGAGGTTGTTTTCACATAAAGATTGTTTTGATCCCATCTTAATTATAATAACAGACGACATAGATGACATGCAGGCATACATTTAGgtctttgttgttgttgaatCCTATGCGGTCCACAGACTCACCACAGGCCTTTTCAGGGTTTCTATTATAATATGTTAGTGAAAATCGAGTGCAGAAATACAGTTCAAACATTTCCTAAATCTGTAAAGTCTCCCCTTTCAATTGCATTTTACACTGAGATTGACTATAATTGATTTGCATCTAGGAGTTATTAGACTATACAAAAAAGAttagatttttaatttatttattttctaatatttatttctgttttatccCATTTTACTTGGAAAGGTAATTACCCCAAAACGACACTCTGATCAACTATCTGGGGTCTGCATTTAAAGTAATTCCACAGTTATATATTTAAGTGCATTGTTAGTAATTTCCCGAGTGTCTGTTGGTCAGTGTCACACAAAACATAGACAAGCTCACAGAAATCACATGTAAAAGGCAGACAACAATGTCTAAAATCCATCAGTTAGACACGATAAGAGGCACAAGACAAGTTTCTCAATCGCATTGCATTATCCTGAAGATATTAATAGAAATATTGAGATGCATCTGTGAGTTTGTGGACCCCAGAGGGTTAGAAAGCTACTGAAGTTACAGATTCATCTTTTATCCTTGAAACAATTTTTTAGGTTTCTATGGAAGCTATTATTTCGATGTTGTTTAATTCTGACACTGTATTTTCATTCACCTTTTCTGTTAATTGTGTCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259143.3 True 6351 mRNA 0.43 2 4088103 4097955

Neighbor

gene id symbol gene type direction distance location
LOC103038619 NA coding downstream 194738 3884014 ~ 3893365 (-)
LOC103039858 LOC108426464 coding downstream 217927 3861574 ~ 3870176 (-)
ccdc189 NA coding downstream 248546 3836623 ~ 3839557 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding downstream 258740 3823918 ~ 3829363 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding downstream 281085 3802912 ~ 3807018 (-)
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding upstream 50233 4148188 ~ 4161856 (-)
LOC103044368 LOC108426474 coding upstream 121512 4219467 ~ 4440792 (-)
atrnl1 atrnl1,atrnl1b,LOC107755548,LOC107689951,LOC107708169 coding upstream 494079 4592034 ~ 4703993 (-)
LOC103022618 cyth1,cyth1b,LOC103022618,LOC108274176,LOC108426518,LOC104925066,LOC107755486,LOC107690912,LOC107684080,LOC107581598 coding upstream 613145 4711100 ~ 4791734 (-)
LOC111192353 LOC106633734 coding upstream 663631 4761586 ~ 4763069 (-)
G34265 LOC108426470 non-coding downstream 84301 4002924 ~ 4003802 (-)
G34240 NA non-coding downstream 162413 3925481 ~ 3925690 (-)
G34238 NA non-coding downstream 163434 3924442 ~ 3924669 (-)
G34232 NA non-coding downstream 177591 3910289 ~ 3910512 (-)
G34230 NA non-coding downstream 184534 3903334 ~ 3903569 (-)
G34298 bms1,LOC106605356,LOC107566656,LOC103354837,LOC108228954 non-coding upstream 14426 4112381 ~ 4124821 (-)
G34300 NA non-coding upstream 35331 4133286 ~ 4135287 (-)
G34311 NA non-coding upstream 73098 4171053 ~ 4177653 (-)
G34342 NA non-coding upstream 363922 4461877 ~ 4509252 (-)
G34381 NA non-coding upstream 488490 4586445 ~ 4586858 (-)
G34214 NA other downstream 204634 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 298911 3783125 ~ 3789192 (-)
G34046 NA other downstream 893726 3181168 ~ 3194377 (-)
G33904 NA other downstream 1778774 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1892008 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 873743 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1157664 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 1805633 5903588 ~ 5928154 (-)
G34770 NA other upstream 1837880 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 1951046 6049001 ~ 6147311 (-)

Expression


Co-expression Network