LOC103037557 (gabrz,LOC108426470,LOC108273489,LOC107675029,LOC107754081,LOC107565977,LOC107677887,LOC107563789,LOC107743757)


Basic Information

Item Value
gene id LOC103037557
gene name gabrz,LOC108426470,LOC108273489,LOC107675029,LOC107754081,LOC107565977,LOC107677887,LOC107563789,LOC107743757
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3958779 ~ 4003265 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259145.3
CGGTGTGCTGTTTTCCGAGTTTCTCTCAGACGCAACCAGTAGTTGCTGCTGAGTGAGTGGTGTCTGCGCGTCCGGAGGACAGACTTCAGCTTTATCTTTCTTTATCTCGCTTTTTAGTGAAGAAAAACACGGGAATTCTGTTTAAACCGAGAACTAAATGGCTGAAAGCAGCAAGGAATTCAGCTTTCACAGATGAGCGCTTCGTTATCCTTCGCAGCTGCCTTCAGTCTAGACATGCAAACGGGTGAACGACTTTAAATACAGACGCCTGAGACTCCTGCCGCCATGCGTTTATGCAGCCCTCCAGGCTCTGTAGTCTTTATTTTCATCATAAGCAGGATCATAGAGGGCTCAGGCTCCGGCGCTGAAGAGGTCCTGCCTCCCaccattcagaaactgatgaaGGGATACAACAAGTACCTGAGGCCTTTCTTCGGCAATGGTCCTGTTACTGTTGGGATGAGTCTGGACATTGCCAGCATAGACACTATATCAGAGATCAATATGGACTACACAGCCACTATCTTCCTGCGACAGCGCTGGACGGACGAGCGTCTGTGTTTCGACGGGAATAAGAGTCTGAGTTTGGACGGCAGGCTGGTGGAGCTCCTCTGGGTTCCTGACACATTCATCGTGGACTCCAAGAAATCCTTCCTGCATGACATCACTGTGGAGAACAGACTGATCAGGATATTCCCCAACGGAACCGTGCTCTACGCCCTCAGaatCACCACCACAGTGGCTTGCAGTATGGACCTGACCAAGTACCCTATGGACAAACAAACGTGCACACTTCAGCTGGAGAGCTGGGGTTATAATGTGAAAGATGTGGTGTTTTATTGGACTCGGGGGAACCAATCAGTTAGCGGACTTGATACTCTACAGCTGGCCCAGTACACCCTGGAGGACTATTATACCTCAGAATCTGAAGCCGTCTATGAGACTGGTAACTACCCAAAGCTGATTTTTCATTTCCAGCTGAGGCGAAGCATCCTTTACTTCATTCTGGAGACATACGTGCCATCCAGTGCTCTGGTGGTCCTGTCCTGGGTTTCCTTCTGGATCAGCCAGTCCTCTGTCCCTGCTCGCATCTGCATAGGGGTGACCACAGTCCTGACTATGACCACTCTGATGATGGGGGCACGCACTTCTCTGCCCAATGCGAACTGCTTCATCAAAGCGATTGACGTGTACCTGGGCATCTGCTTCAGCTTCATCTTTGGAGCTCTCATCGAGTATGCTGTCGCTCATTTCTGCACTTTGCACCAGCCAAATGCTGCCAATGCATATATgTATGGACAGGAGATGCAGGAGCGTGAGGATGAGATGAACGGAATCGTCACCTCCATCGGCAGCGCTGCAGCTCTGCGGGCGCGCAGGAGGGAGGAGATGCTGTCCCGTGCCGGCAGCACCAGCAGCCCAACTCCCAGTGACAATAAAGAGGAGAAGACCTCCTCCCAGCCCCAGAGCGGCTGCGCCAAGTTCCTGTCAGTGGCACGGCGCATCATGTGTTTCCTGAACTGCTGCCATGTGGAAAATCCGCACTACATCGACAACTACTCCCGTCTGACCTTCCCCCTGTCCTTCATCTTCATCAACCTGCTCTACTGGACCTACTACCTGTACttctagtgtgtgtgtatgtatgtgtgtgtg
>XM_007259146.3
CGGTGTGCTGTTTTCCGAGTTTCTCTCAGACGCAACCAGTAGTTGCTGCTGAGTGAGTGGTGTCTGCGCGTCCGGAGGACAGACTTCAGCTTTATCTTTCTTTATCTCGCTTTTTAGTGAAGAAAAACACGGGAATTCTGTTTAAACCGAGAACTAAATGGCTGAAAGCAGCAAGGAATTCAGCTTTCACAGATGAGCGCTTCGTTATCCTTCGCAGCTGCCTTCAGTCTAGACATGCAAACGGGTGAACGACTTTAAATACGCCTGAGACTCCTGCCGCCATGCGTTTATGCAGCCCTCCAGGCTCTGTAGTCTTTATTTTCATCATAAGCAGGATCATAGAGGGCTCAGGCTCCGGCGCTGAAGAGGTCCTGCCTCCCaccattcagaaactgatgaaGGGATACAACAAGTACCTGAGGCCTTTCTTCGGCAATGGTCCTGTTACTGTTGGGATGAGTCTGGACATTGCCAGCATAGACACTATATCAGAGATCAATATGGACTACACAGCCACTATCTTCCTGCGACAGCGCTGGACGGACGAGCGTCTGTGTTTCGACGGGAATAAGAGTCTGAGTTTGGACGGCAGGCTGGTGGAGCTCCTCTGGGTTCCTGACACATTCATCGTGGACTCCAAGAAATCCTTCCTGCATGACATCACTGTGGAGAACAGACTGATCAGGATATTCCCCAACGGAACCGTGCTCTACGCCCTCAGaatCACCACCACAGTGGCTTGCAGTATGGACCTGACCAAGTACCCTATGGACAAACAAACGTGCACACTTCAGCTGGAGAGCTGGGGTTATAATGTGAAAGATGTGGTGTTTTATTGGACTCGGGGGAACCAATCAGTTAGCGGACTTGATACTCTACAGCTGGCCCAGTACACCCTGGAGGACTATTATACCTCAGAATCTGAAGCCGTCTATGAGACTGGTAACTACCCAAAGCTGATTTTTCATTTCCAGCTGAGGCGAAGCATCCTTTACTTCATTCTGGAGACATACGTGCCATCCAGTGCTCTGGTGGTCCTGTCCTGGGTTTCCTTCTGGATCAGCCAGTCCTCTGTCCCTGCTCGCATCTGCATAGGGGTGACCACAGTCCTGACTATGACCACTCTGATGATGGGGGCACGCACTTCTCTGCCCAATGCGAACTGCTTCATCAAAGCGATTGACGTGTACCTGGGCATCTGCTTCAGCTTCATCTTTGGAGCTCTCATCGAGTATGCTGTCGCTCATTTCTGCACTTTGCACCAGCCAAATGCTGCCAATGCATATATgTATGGACAGGAGATGCAGGAGCGTGAGGATGAGATGAACGGAATCGTCACCTCCATCGGCAGCGCTGCAGCTCTGCGGGCGCGCAGGAGGGAGGAGATGCTGTCCCGTGCCGGCAGCACCAGCAGCCCAACTCCCAGTGACAATAAAGAGGAGAAGACCTCCTCCCAGCCCCAGAGCGGCTGCGCCAAGTTCCTGTCAGTGGCACGGCGCATCATGTGTTTCCTGAACTGCTGCCATGTGGAAAATCCGCACTACATCGACAACTACTCCCGTCTGACCTTCCCCCTGTCCTTCATCTTCATCAACCTGCTCTACTGGACCTACTACCTGTACttctagtgtgtgtgtatgtatgtgtgtgtg

Function

symbol description
gabrz Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in cerebellum; diencephalon; eye; and telencephalon. Orthologous to human GABRP (gamma-aminobutyric acid type A receptor subunit pi).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit pi-like

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05189 GABRP; gamma-aminobutyric acid receptor subunit pi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259145.3 True 1656 mRNA 0.52 10 3958779 4003265
XM_007259146.3 False 1652 mRNA 0.52 10 3958779 4003265

Neighbor

gene id symbol gene type direction distance location
LOC103038101 valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788 coding upstream 34548 3910571 ~ 3924231 (+)
LOC103038417 NA coding upstream 61203 3894781 ~ 3897576 (+)
LOC103039243 LOC103039243 coding upstream 79599 3877901 ~ 3879180 (+)
LOC103039553 znf668,LOC103039553,LOC108426467,LOC107754087,LOC107675019,LOC107743759 coding upstream 82786 3871497 ~ 3875993 (+)
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107743762,LOC107675023 coding upstream 106760 3839946 ~ 3852019 (+)
LOC103037237 adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791 coding downstream 35892 4039157 ~ 4070732 (+)
LOC103043774 NA coding downstream 100107 4103372 ~ 4105753 (+)
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding downstream 105192 4108457 ~ 4132971 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding downstream 523680 4526945 ~ 4570849 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding downstream 795838 4799103 ~ 4819304 (+)
G34188 LOC108426464 non-coding upstream 90284 3864368 ~ 3868495 (+)
LOC103040174 NA non-coding upstream 97330 3853445 ~ 3861449 (+)
G34177 NA non-coding upstream 154202 3802979 ~ 3804577 (+)
G34105 NA non-coding upstream 401288 3545453 ~ 3557491 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding upstream 568202 3382988 ~ 3390577 (+)
LOC111192351 NA non-coding downstream 218 4003483 ~ 4008413 (+)
G34288 NA non-coding downstream 134490 4137755 ~ 4138153 (+)
G34345 NA non-coding downstream 580453 4583718 ~ 4583977 (+)
LOC111192352 NA non-coding downstream 701648 4704913 ~ 4708973 (+)
G34393 NA non-coding downstream 770621 4773886 ~ 4774852 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 299647 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 1901816 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2570760 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2966261 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2973398 983167 ~ 985381 (+)
G34309 NA other downstream 167786 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 879291 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1689257 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2243381 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2498880 6502145 ~ 6541460 (+)

Expression


Co-expression Network