LOC103038101 (valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788)


Basic Information

Item Value
gene id LOC103038101
gene name valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3910571 ~ 3924231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259147.3
ACAGGCTGAGCTCATGAATAAAGAAGTGTTAAACCTATATCTTTCATCTGCTTCCTTTATCTGCGTGCTGAGTGAAAGGGGGCTTTGGGTGGGCAACAGAGCGACGGTGGCGCGCGTCCACGCCTCCTCACCTAACGCTGCGCGGTCCGGGGCGGCGGAGCGGCGCGCACCTTCGGGGATGGAGCTGTAGCACAGACACCTTGAGGGATGGAAATGGCAGAGTGTATAAAAAGGAGCCGGCGGTGGACATGCCCAGCGCGAGATGAGGACGGAGCGCGAGGACACGCGCGGGGCTCCTTCTTTAGAATtactagaaataaataaattttaaaaagcatgttgtgCGGCTTTGCACTCTTCTCTAAGTTggatctctttttttctttataaaacagtttttCTGACCCGCTTTAAGACTTCTGAAGATTCTTCCAGaaatcctggactttctgaggGGAATTAGACCCAGCTCCTCTTTATTCAAGCTTAGATTTAGCCCCTGTTCATTCCTTTGGCTCCTCAGGGATTCACTTATGAACTTTTTCTTCATCCACTTTCTTCACTATTCTTCCCCGATTCAGCTACAGCATGGAGCCCTACTCATCTTCAGCCAACGGGGTTTCATACACCGAATCCACAGAGGCAGTGACGGAGCCTGGAGACCCCTCAGAGAATGAAGACCCCTTCGCAGGTCCCCTGAAGTCCATCGCCCCCTGGAACTACACTTTCCTGGCGTGTCTGATGTTCGTCGTGacttctgtctcactctttgaAAACTTCACCGTCATGCTGGTCACCTACAAGTTCAAGCAACTGAGGCAGCCGCTCAATTACATCATCGTTAACCTGTCCGTGGCTGATTTCTTCGTCTCTCTGATCGGAGGAACTATAAGTTTCCTCACGAACTCATGTGGCTACTTCTTCCTGGGCAGGTGGGCGTGTGTGCTGGAGGGATTTGCTGTCACTTTCTTCGGGATTGTGGCTCTCTGGTCTTTGGCAATTCTGGCATTTGAGCGTTTCTTTGTGATCTGCCGGCCACTGAAAAACGTTCGTTTGGGGGGAAAACATGCTGCACTGGGTCTTCTGTTTGTCTGGACATTTTCCTTCATCTGCACCATTCCTCCAGTGTTTGGCTGGAACAGCTACACAACCAGCAAGATTGGCACCACTTGTGAACCAAACTGGTACTCAACAGACTACTATGACCACACCTACATCATTGCGTTCTTCGTCACCTGCTTTATCCTTCCTCTGGGAGTAATTATTGGCTCTTATGCTAAACTCATGCAGAAGCTCAAAAAGGTATCCAACACCCATGGAAGGCTGGGTAATGCTCGGAAACCGGACAGAGCAGTAGCACGGATGGTCATTGTAATGATAATTGCTTATATGGTCGGCTGGACACCTTACGCTGCATTCTCCATCACTGTTACCGCCTGTCCCACCATCCATATTGACCCTCGCCTTGCTGCAGCACCAGCCTTCTTCTCTAAGACTGCAGCTGTCTACAACCCTGTCATTTATGTCTTCATGAACAAACAGTTCAGGAAGTGCCTGATTCAGATGTTCAAAGGCAACGGGGCCAACATAGACTCCTCCCACATGAACCAGACTTCGGACAAAGGGGGCGCCACAGCGGAGAGTCACTTAGGGGAAATGTCCACAATCGCTGCCCGCGTGCCCATGACCTTGAGCAACTTGGAAAAGACTGAAGAAgaagatgaggatgatgagAAGGACCAGAACGAAAACGGAGGTTCCATGCAGCTCCCCCTATCAGAGAGCAGATTGTGTCCTCTATAGAGCAGCGTTGCCCTCAGTGAAGCCTGAGGCCTGTAGTTGTACCTCTCTGCTCAGTAGCGTTCCACCTTTCAGTCAGCCTGTAAAACAGCAGAGAAGAGACCTGCTTTCTAGAGGAGGATTGCATGTGTACAACGTGGATATTATTGTGTTTGCCTTTGCTGTTCCAGATTCCAGTGCAAGGAAACATctaagtgtttgtgtttatttgccaTTCTTGCACTATAAAAAGCTACACTGTGATATATTTTGAGGGTAAGATTTAGAATATTTCTATGTATACTTGTCACCAAAATAAAAGTTGCACCCAGATTGGATTGTAAA

Function

symbol description
valopb Enables photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; digestive system; eye; gonad; and heart.

NR:

description
vertebrate ancient opsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259147.3 True 2124 mRNA 0.48 5 3910571 3924231

Neighbor

gene id symbol gene type direction distance location
LOC103038417 NA coding upstream 12995 3894781 ~ 3897576 (+)
LOC103039243 LOC103039243 coding upstream 31391 3877901 ~ 3879180 (+)
LOC103039553 znf668,LOC103039553,LOC108426467,LOC107754087,LOC107675019,LOC107743759 coding upstream 34578 3871497 ~ 3875993 (+)
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107743762,LOC107675023 coding upstream 58552 3839946 ~ 3852019 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding upstream 73990 3831384 ~ 3836581 (+)
LOC103037557 gabrz,LOC108426470,LOC108273489,LOC107675029,LOC107754081,LOC107565977,LOC107677887,LOC107563789,LOC107743757 coding downstream 34548 3958779 ~ 4003265 (+)
LOC103037237 adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791 coding downstream 114926 4039157 ~ 4070732 (+)
LOC103043774 NA coding downstream 179141 4103372 ~ 4105753 (+)
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding downstream 184226 4108457 ~ 4132971 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding downstream 602714 4526945 ~ 4570849 (+)
G34188 LOC108426464 non-coding upstream 42076 3864368 ~ 3868495 (+)
LOC103040174 NA non-coding upstream 49122 3853445 ~ 3861449 (+)
G34177 NA non-coding upstream 105994 3802979 ~ 3804577 (+)
G34105 NA non-coding upstream 353080 3545453 ~ 3557491 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding upstream 519994 3382988 ~ 3390577 (+)
LOC111192351 NA non-coding downstream 79252 4003483 ~ 4008413 (+)
G34288 NA non-coding downstream 213524 4137755 ~ 4138153 (+)
G34345 NA non-coding downstream 659487 4583718 ~ 4583977 (+)
LOC111192352 NA non-coding downstream 780682 4704913 ~ 4708973 (+)
G34393 NA non-coding downstream 849655 4773886 ~ 4774852 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 251439 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 1853608 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2522552 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2918053 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2925190 983167 ~ 985381 (+)
G34309 NA other downstream 246820 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 958325 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1768291 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2322415 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2577914 6502145 ~ 6541460 (+)

Expression


Co-expression Network