phkg2 (phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018)


Basic Information

Item Value
gene id phkg2
gene name phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3831384 ~ 3836581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259154.3
TGgtctgaattcagcacaacaggCGAATGATCCCTGCagaagttagctagctaaagctgTGTGGTTGGTTTGTTTACTCTTTAGGTACCGAATTTAACCCCCTTGGGAAACCTGTTCGTGCCTTTAAGGTCATGAATACTTTAACCACAGCGTTAGCTCAGCTAAATGTCGGTGTTTAGTTAGTCTGCTGATTTCTGAATAGAGCTGCTGCCGGGGCAAATGACAGTGAAGTGTTTCTGAAGCGGATCAGGGGCCTCAGcgcTGCAATCATGACCCGCGACGTGCTTGGAGATGAACTGCCTGATTGGGTGGGTGCAAAGGAGTTCCATCAGAAGTATGAGCCCAAGGAGGTCATTGGCAGAGGTGTGAGCAGTGTGGTGCGCAGGTGTGTTAACAAACACACAGGAGAGGAATTAGCAGTGAAGGTGATTGagattactgcagaaaaaatgaCAGTCCAGCAGTTGGAAGAAGTGAAGAGCTCCACTCTGAAGGAGATCCACGTCCTTAATGTATTGAAAGGGCACCCGTCAATCAtcacaCTTGTTGATTCATATGAGTCAGCAACATTCATCTTTTTGGTTTTTGACCTCATGAGAAGAGGAGAGCTGTTTGATTACTTAACAGAAAAGGTCACTCTCAGTGAAAAGGAGACGAgGTATATGATGCGTGCTCTTCTTGAAGCTGTCCAGTACCTTCATTCCCTTAATATTGTACACCGGGACCTCAAACCTGAAAATATTCTGCTGGATGACCAGGGACACATTAAACTATCAGACTTTGGTTTTTCAGTGCAGCTGCGACCTGGACAAAAGCTGAGAGAGCTGTGTGGTACTCCAGGCTATCTTGCGCCAGAGATTCTGAAATGTTCAATGGATGAAACACATGAGGGATATGGAAAAGAGGTTGATCTGTGGGCATGTGGTGTGATCCTGTTTACGCTACTTGCTGGATCTCCTCCTTTCTGGCACCGTAAACAGCTTCTGATGCTAAGAATGATCATGGAGGGCCGTTATCAGTTCAGCTCTCCAGAGTGGGATGACAGATCTGATACTGTCAAAGACCTGATCTCAAGGCTTTTGGTGGTAGATCCTCCGCTTCGTCTTACAGCCGAGCAAGCTTTGGCTCATCCTTTCTTTCGCCAGTATCAAAAAGAGGAGGTACGACTGTTTAGTCCCAGGAAGACATTCCGGGTCCTAATCCTGACTGTTTTGGGCTGTATTCGTATGTACTGCCGCTACAACCGGGCCAGGCCCCTGACGCGGGAGCTCCTAGCTAGAGACCCTTACTCTTTGAGAGCTGTGCGCAAACTTATTGACGGCTGTGCTTTTCGCATATATGGACACTGGGTGAAGAAAGGGGAACAACAGAACCGGGCTGCTCTTTTCCAGAACACCACTAAAATTCTTCTTGTTGGTTTAGAGGACCTTGAGAACTAGATCCATTATTTTCCTGTATCTAACGATACTTCACTATTTTGCATTATAAGTTATAACACAGTTCAGGGACTATAGGCATTCATCCGTCCAGAGGCGCACAAAACAGATTTGTACTATTTATTCATGATTACTGTTTCATTAACAATGAGAGGtgcttcattcattcattcaatgttACATGCAAGTAATCTGACCTCACTTTTACTGTTTCACTGTATTATGATCAGGTTGCTCTTGAATGTATGAACAGACCTGTAGCATACTAAGTGTACTGCTTGTGtataatctaaaaatataatatgcaGATTGGGGATGACTAGATTGGGGTTGCTGGCTATTGTAACTCTGTTTACATTCCAACAGACCAGCGGCTATTCTTGGGTGTTATATAATCTTGTTGAATTTAAACACTGTAAGTGTCCTAATGATTGTTAAGTGCATTACCAGAGGTTTATTTACTGGCTAATTTGTAAATTACCAGATTGTGGATGACAGGTAACTACTGTATTGTACATCtagttttagttttactttGTTTATATCTTAGCTCAGAtacattattttactgcagcatttacatcTTTCTGATAAGCAATGTATGGTTGCTTTCCTGATCACTTTcagaagatttattttaatatatttgaccACTTATTCCTTTTCATCTATGATAACCAAACACCATGTTTTTATGACTGAGTACTGTACTGATTGTgactaaaaaagcaaatatattactatattattatt

Function

symbol description
phkg2 Predicted to enable ATP binding activity; calmodulin binding activity; and phosphorylase kinase activity. Predicted to act upstream of or within glycogen biosynthetic process and protein phosphorylation. Predicted to be part of phosphorylase kinase complex. Human ortholog(s) of this gene implicated in glycogen storage disease; glycogen storage disease IXc; and liver cirrhosis. Orthologous to human PHKG2 (phosphorylase kinase catalytic subunit gamma 2).

NR:

description
phosphorylase b kinase gamma catalytic chain, liver/testis isoform

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005964 phosphorylase kinase complex cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004689 phosphorylase kinase activity molecular_function

KEGG:

id description
K00871 PHKG; phosphorylase kinase gamma subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259154.3 True 2189 mRNA 0.42 10 3831384 3836581

Neighbor

gene id symbol gene type direction distance location
nfe2l1 nfe2l1,nfe2l1b,LOC107565927,LOC107563780,LOC107743763,LOC107677875 coding upstream 10416 3813096 ~ 3820968 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding upstream 29846 3793875 ~ 3801538 (+)
pnpo pnpo coding upstream 49606 3777742 ~ 3781778 (+)
tbx21 tbx21 coding upstream 85270 3728416 ~ 3746114 (+)
cdk5r1 cdk5r1,LOC108426451,LOC103047129 coding upstream 432242 3392308 ~ 3399142 (+)
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107743762,LOC107675023 coding downstream 3365 3839946 ~ 3852019 (+)
LOC103039553 znf668,LOC103039553,LOC108426467,LOC107754087,LOC107675019,LOC107743759 coding downstream 34916 3871497 ~ 3875993 (+)
LOC103039243 LOC103039243 coding downstream 41320 3877901 ~ 3879180 (+)
LOC103038417 NA coding downstream 58200 3894781 ~ 3897576 (+)
LOC103038101 valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788 coding downstream 73990 3910571 ~ 3924231 (+)
G34177 NA non-coding upstream 26807 3802979 ~ 3804577 (+)
G34105 NA non-coding upstream 273893 3545453 ~ 3557491 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding upstream 440807 3382988 ~ 3390577 (+)
G34073 NA non-coding upstream 511462 3319714 ~ 3319922 (+)
G33987 NA non-coding upstream 613042 3217004 ~ 3218342 (+)
LOC103040174 NA non-coding downstream 16864 3853445 ~ 3861449 (+)
G34188 LOC108426464 non-coding downstream 27787 3864368 ~ 3868495 (+)
LOC111192351 NA non-coding downstream 166902 4003483 ~ 4008413 (+)
G34288 NA non-coding downstream 301174 4137755 ~ 4138153 (+)
G34345 NA non-coding downstream 747137 4583718 ~ 4583977 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 172252 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 1774421 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2443365 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2838866 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2846003 983167 ~ 985381 (+)
G34309 NA other downstream 334470 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 1045975 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1855941 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2410065 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2665564 6502145 ~ 6541460 (+)

Expression


Co-expression Network