cbx1 (cbx1,cbx1b,LOC107677876)


Basic Information

Item Value
gene id cbx1
gene name cbx1,cbx1b,LOC107677876
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3823918 ~ 3829363 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259156.3
ctcctctGTAGATGCTCTCTGGTAGATATtcgcttttttatttttgttttattttcttttgtttaaactgaactgagctgagagagagtgataataaataatttgtgaCTAATTTTCCACAGGTACTCAGTGGTAGCGGGGTTGTTCCTGTAGTTGGGGGCAGAGCTCCAGAACGCGTGCGCTGAGCCGCAGGGCTGCTGGAGCTGAACTAGCCGACCATGTTTTTCCTCTGTAACTGATCCACACTGTAGCCCCAAAACAGCGTTTTCCCTAGTCGAGCCCTTACAGCTGTGCTTGAAGCTGGACTTATGTCAGTGCGTTTCGCTGCAGCGCCTTTTGTACACGCGGGCTAGCTACAAGTGTTAAAATCCTTTGGAAATATGAGCCAAATTACAGAGACCCCGCCTGTTGAAGCTCCTAAAGTGACAGAAGTGCTCACAGATCCTCCCCCTCAGACTGAGGCCAAGCCAGTAACAGCAGGaggaaagaaacaaaataaaaagaaagtggAAGAGgtggtggaggaagaggaggaggagtatgTTGTGGAGAAAGTCCTGGACCGACGTATTGTGAAGGGAAGAGTAGAATATCTCCTCAAGTGGAAAGGCTTTACAGATGAAGACAATACCTGGGAGCCAGAAGAAAACTTGGACTGCCCAGATCTAATCGCAGAATACCTGCAGTCCCAGAGAAATGCCAGCGAGTCTGGCTTCAAGCGGCGCTCCGACGCTGATGGAGATGTAAAAGAAAGCCAATCTAAAAAACGCAAGGATgagCCTGAGAAACTCAGAGGCTTTGCTCGTGGGTTGGATCCTGAGAGGATTATTGGTGCTACAGACTCAAGCGGAGAACTCATGTTCCTGATGAAATGGAAAAACTCTGATGAGGCAGATCTTGTACCAGCTAAGGAGGCGAATGTGAAGTGCCCACAAGTGGTCATTTCATTCTATGAGGAGCGCCTCACATGGCATTCTTACCCCACTGATGAGGAAGAGAAGAAGGATGAGAAAAAGTAGATGAAAGTCAGGTGCTACTAGGAGTTCATGCTGTAAACGGCAGTCATCAAAATGCACtcctctgtttttaattttagaaagaaaaagaaagtttaTATGATTAAGTCCCAGCATCTGAAATCAGTAACTGAAAAGTTACTGTAATTTACGTAGGTTTGTCACACTTTGCCATGTAATCATGTAGCGTACATCTAACATATCACCTTATAGTTTACAGTTTTAGCTGTTGCAATCTGTTACCTCACCGTTTACCAACCCTCCTCTACTCTATCCATAATTGGACAGGGACCACCATAGGAAACCACAACTGACCAGATCTTTTTAGGTTTTAGGCAAAGAGTTTTAATCTCGGCTGTATACATACCAGTTCTTTAAATTAtgcaattactgttttattgtttttttttaaagtcaattaGCTGAAACTTTACCACTTCAGACAGAAGTTTCTAAGCAAAACAGTGCCACTTACCTATTGGAGACCACTGTACAAGTGAACAAGCACTACAGTGCTGCTGTTCTTCTTAATGTCATTTCTGAAAATAGGCATACTAACCTAAATCATCCAGCCAACAGTGGCCGTGTTGAGAAACTGACCAATGATGAAGGCCTTGACGATAATGAAGGAACTGTGCATGGAGGAAGACCAGAGacactttaaaatattaaaatacaccTAAAATATTGGCCAACACAGTAAGTTAACTCAGTGCTAAAaagtaaaagataaaaataccaGTGTAAATAACAAGTACACTGTTATAAATGTAACACAAAAAAGTTTGAAGATCGAAACATTTTAAGCTTAGTCAGTCCATAAAGTGGCAGCTTAGTGTACAGTGGCATGCAAGTTTAGGCATCTCTGTTACTATGAACagttaaacatataaataaagtaaaaaatatagatCCCAGTCAGATTTCTCACAATATCAAAAAAACAACCTGCCCCTGAAATTATGTTTTCTAAATTAAATCATCTTAAAGTCTCAGCAGTGTTACTAAATTTGAGTtaaaaatttacttaattttggGACAAGTACATGGCTTCGACGACTCCTTCTCCAGATCATCCAGCCCTTTATATACCCCTACCTTTCAGCCTATCCAAAATCAAACATACTTCGCCCCCATCTGCACTCCATTTCCCGACAGACCACCAAAAAGCCAACAAGGACTCCTAGCCCACCCAAAACATAATATTGATAGTGCAGCAAGAATTGATGCAATTAAATGCCAGCAATTTCTGGAAACAATCATCACACCATATGTAAAAAGAAATCAAGATAAAAGAGTATTCCAAAGCAGAATAATGATCCCAAACACACATTAACGTCCACAATActtaaaacctttaaatataTAAGGTTGTACTGTGGCTGTCAAATTTCTCTGACCTAATTATCATAAAAAATCTGGTGATAGACATCAGAACAGCAGTGCGGCAAGATGGCCCACGAATCAATAAAAGCCTTCTGCAAGGGAAAATAGGTGAAAGTCCCTCAAACATGGACTAAAAATGCTTAGCTggcaacacaaaaaaatgtttaaaagctgtaaaGCTTGCACTTTATCTTCAGGcccatttcatttttttgtttctctttattgtaaaaaatgGAAAGAATGAAAAAGCTTTGCAATgaccaggggtgcccaaacttttgcatgccactgtatatTTCAGTCATGTTGCTGGTTAATACATTCAAACATTCATTAGACTCCTGCttatctgtttctgtttctctgcactaATTACTGTGAAGTAAAGACCCTctgtaaattacagttttgaaaGCACTTATTTTAACATGTCCCCAGTTTTAATGTACATTTATCTGATTTGAATATACTGCCTTATCTGAGATGATGAACACATTTAAATTTTTCACCATTTGCCAATATAAAACAGGTTTGTAAATGcacaagtaattaaaaaaaaggcccTCGACTGTAAAGAGTATGTGGACGACGGCTTGTAGCTTGACCAAGAGACCCATGTAGTGGTAAATGGTTTGTACAAGATGCTCTTTACGAGAATGTTCACTCTTGCCAGCAAACAGCTTTGAATTTGAAAAGATTAATATTGTTGTTCTGGTCACAGTATAGGTGCTATCATTGGATGAGCCCATTTTTTGGACAGCATTGTAAATATACTATCTGGACATTGCATTATAAGTCACAGGTTTGGTGCATTACTTTTATATTCTTGGTTTGTTACAATATCATGTAGTAAAAATAGCAACAGTGTTTTTAGGTTTGAGGTAAGTGTTTAGTTACTTTATTCAGTCCTATTTGTGTATGTGCCAGTCCGAAGAGTTTAGTAATTACGGTgtaatcttttttgttttttaaagaaaaaccaCTACcactttgtgtttgtttaataaatgtagGATTGATGAa
>XM_022668923.1
TAAGAAACTCAGAAGACACTCTtaagtgggtattctcctctGTAGATGCTCTCTGGTACTCAGTGGTAGCGGGGTTGTTCCTGTAGTTGGGGGCAGAGCTCCAGAACGCGTGCGCTGAGCCGCAGGGCTGCTGGAGCTGAACTAGCCGACCATGTTTTTCCTCTGTAACTGATCCACACTGTAGCCCCAAAACAGCGTTTTCCCTAGTCGAGCCCTTACAGCTGTGCTTGAAGCTGGACTTATGTCAGTGCGTTTCGCTGCAGCGCCTTTTGTACACGCGGGCTAGCTACAAGTGTTAAAATCCTTTGGAAATATGAGCCAAATTACAGAGACCCCGCCTGTTGAAGCTCCTAAAGTGACAGAAGTGCTCACAGATCCTCCCCCTCAGACTGAGGCCAAGCCAGTAACAGCAGGaggaaagaaacaaaataaaaagaaagtggAAGAGgtggtggaggaagaggaggaggagtatgTTGTGGAGAAAGTCCTGGACCGACGTATTGTGAAGGGAAGAGTAGAATATCTCCTCAAGTGGAAAGGCTTTACAGATGAAGACAATACCTGGGAGCCAGAAGAAAACTTGGACTGCCCAGATCTAATCGCAGAATACCTGCAGTCCCAGAGAAATGCCAGCGAGTCTGGCTTCAAGCGGCGCTCCGACGCTGATGGAGATGTAAAAGAAAGCCAATCTAAAAAACGCAAGGATgagCCTGAGAAACTCAGAGGCTTTGCTCGTGGGTTGGATCCTGAGAGGATTATTGGTGCTACAGACTCAAGCGGAGAACTCATGTTCCTGATGAAATGGAAAAACTCTGATGAGGCAGATCTTGTACCAGCTAAGGAGGCGAATGTGAAGTGCCCACAAGTGGTCATTTCATTCTATGAGGAGCGCCTCACATGGCATTCTTACCCCACTGATGAGGAAGAGAAGAAGGATGAGAAAAAGTAGATGAAAGTCAGGTGCTACTAGGAGTTCATGCTGTAAACGGCAGTCATCAAAATGCACtcctctgtttttaattttagaaagaaaaagaaagtttaTATGATTAAGTCCCAGCATCTGAAATCAGTAACTGAAAAGTTACTGTAATTTACGTAGGTTTGTCACACTTTGCCATGTAATCATGTAGCGTACATCTAACATATCACCTTATAGTTTACAGTTTTAGCTGTTGCAATCTGTTACCTCACCGTTTACCAACCCTCCTCTACTCTATCCATAATTGGACAGGGACCACCATAGGAAACCACAACTGACCAGATCTTTTTAGGTTTTAGGCAAAGAGTTTTAATCTCGGCTGTATACATACCAGTTCTTTAAATTAtgcaattactgttttattgtttttttttaaagtcaattaGCTGAAACTTTACCACTTCAGACAGAAGTTTCTAAGCAAAACAGTGCCACTTACCTATTGGAGACCACTGTACAAGTGAACAAGCACTACAGTGCTGCTGTTCTTCTTAATGTCATTTCTGAAAATAGGCATACTAACCTAAATCATCCAGCCAACAGTGGCCGTGTTGAGAAACTGACCAATGATGAAGGCCTTGACGATAATGAAGGAACTGTGCATGGAGGAAGACCAGAGacactttaaaatattaaaatacaccTAAAATATTGGCCAACACAGTAAGTTAACTCAGTGCTAAAaagtaaaagataaaaataccaGTGTAAATAACAAGTACACTGTTATAAATGTAACACAAAAAAGTTTGAAGATCGAAACATTTTAAGCTTAGTCAGTCCATAAAGTGGCAGCTTAGTGTACAGTGGCATGCAAGTTTAGGCATCTCTGTTACTATGAACagttaaacatataaataaagtaaaaaatatagatCCCAGTCAGATTTCTCACAATATCAAAAAAACAACCTGCCCCTGAAATTATGTTTTCTAAATTAAATCATCTTAAAGTCTCAGCAGTGTTACTAAATTTGAGTtaaaaatttacttaattttggGACAAGTACATGGCTTCGACGACTCCTTCTCCAGATCATCCAGCCCTTTATATACCCCTACCTTTCAGCCTATCCAAAATCAAACATACTTCGCCCCCATCTGCACTCCATTTCCCGACAGACCACCAAAAAGCCAACAAGGACTCCTAGCCCACCCAAAACATAATATTGATAGTGCAGCAAGAATTGATGCAATTAAATGCCAGCAATTTCTGGAAACAATCATCACACCATATGTAAAAAGAAATCAAGATAAAAGAGTATTCCAAAGCAGAATAATGATCCCAAACACACATTAACGTCCACAATActtaaaacctttaaatataTAAGGTTGTACTGTGGCTGTCAAATTTCTCTGACCTAATTATCATAAAAAATCTGGTGATAGACATCAGAACAGCAGTGCGGCAAGATGGCCCACGAATCAATAAAAGCCTTCTGCAAGGGAAAATAGGTGAAAGTCCCTCAAACATGGACTAAAAATGCTTAGCTggcaacacaaaaaaatgtttaaaagctgtaaaGCTTGCACTTTATCTTCAGGcccatttcatttttttgtttctctttattgtaaaaaatgGAAAGAATGAAAAAGCTTTGCAATgaccaggggtgcccaaacttttgcatgccactgtatatTTCAGTCATGTTGCTGGTTAATACATTCAAACATTCATTAGACTCCTGCttatctgtttctgtttctctgcactaATTACTGTGAAGTAAAGACCCTctgtaaattacagttttgaaaGCACTTATTTTAACATGTCCCCAGTTTTAATGTACATTTATCTGATTTGAATATACTGCCTTATCTGAGATGATGAACACATTTAAATTTTTCACCATTTGCCAATATAAAACAGGTTTGTAAATGcacaagtaattaaaaaaaaggcccTCGACTGTAAAGAGTATGTGGACGACGGCTTGTAGCTTGACCAAGAGACCCATGTAGTGGTAAATGGTTTGTACAAGATGCTCTTTACGAGAATGTTCACTCTTGCCAGCAAACAGCTTTGAATTTGAAAAGATTAATATTGTTGTTCTGGTCACAGTATAGGTGCTATCATTGGATGAGCCCATTTTTTGGACAGCATTGTAAATATACTATCTGGACATTGCATTATAAGTCACAGGTTTGGTGCATTACTTTTATATTCTTGGTTTGTTACAATATCATGTAGTAAAAATAGCAACAGTGTTTTTAGGTTTGAGGTAAGTGTTTAGTTACTTTATTCAGTCCTATTTGTGTATGTGCCAGTCCGAAGAGTTTAGTAATTACGGTgtaatcttttttgttttttaaagaaaaaccaCTACcactttgtgtttgtttaataaatgtagGATTGATGAa

Function

symbol description
cbx1b Predicted to be located in nucleus. Orthologous to human CBX1 (chromobox 1).
cbx1 Enables histone methyltransferase binding activity. Involved in cellular response to DNA damage stimulus. Located in chromosome; nucleus; and spindle. Colocalizes with chromosome, telomeric region. Biomarker of prostate cancer.

NR:

description
PREDICTED: chromobox protein homolog 1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11585 CBX1, HP1B, SWI6; chromobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259156.3 True 3428 mRNA 0.39 6 3823918 3829329
XM_022668923.1 False 3361 mRNA 0.39 7 3823918 3829363

Neighbor

gene id symbol gene type direction distance location
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding downstream 16900 3802912 ~ 3807018 (-)
mrpl10 NA coding downstream 47733 3770639 ~ 3776185 (-)
LOC103044690 osbpl7 coding downstream 53426 3749171 ~ 3770492 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding downstream 268699 3545433 ~ 3555219 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding downstream 291529 3403947 ~ 3532389 (-)
ccdc189 NA coding upstream 7260 3836623 ~ 3839557 (-)
LOC103039858 LOC108426464 coding upstream 32211 3861574 ~ 3870176 (-)
LOC103038619 NA coding upstream 54651 3884014 ~ 3893365 (-)
LOC103036928 NA coding upstream 258740 4088103 ~ 4097955 (-)
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding upstream 318825 4148188 ~ 4161856 (-)
G34166 pnpo non-coding downstream 42177 3777900 ~ 3781741 (-)
G34159 NA non-coding downstream 94958 3728642 ~ 3728960 (-)
G34101 NA non-coding downstream 424805 3391629 ~ 3399113 (-)
LOC111192350 NA non-coding downstream 634482 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 738512 3060369 ~ 3085406 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 10640 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 51219 3880582 ~ 3883412 (-)
G34230 NA non-coding upstream 73971 3903334 ~ 3903569 (-)
G34232 NA non-coding upstream 80926 3910289 ~ 3910512 (-)
G34238 NA non-coding upstream 95079 3924442 ~ 3924669 (-)
prr15l prr15l other downstream 34726 3783125 ~ 3789192 (-)
G34046 NA other downstream 629541 3181168 ~ 3194377 (-)
G33904 NA other downstream 1514589 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1627823 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1646859 2169023 ~ 2177059 (-)
G34214 NA other upstream 7258 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1142335 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1426256 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2074225 5903588 ~ 5928154 (-)
G34770 NA other upstream 2106472 5935835 ~ 5939400 (-)

Expression


Co-expression Network