LOC103042441 (LOC108426417,LOC107677865,LOC108273677)


Basic Information

Item Value
gene id LOC103042441
gene name LOC108426417,LOC107677865,LOC108273677
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3802912 ~ 3807018 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259159.3
TCGACGCCCTAAAGGCTTCTGAGTTCACGTTTCTGGCGAATCTAACTTCTCCGAGCTGCAGGTAGAAAGAAGTGCAGGGTAGCACGGAGACcccgggagagagagaggagcagaggGGGAATCCGTGCAGAAACGGGAGCCGCTGGCACTTTAATAAAGCGGTGCTGCGATCTGTTGTGGCGAGCCCGCGGAGCGTGGGATCACGTCCACGTCCTGTTGATCGCGGAGGATCTGCTGTGAGCTCTTTAAAGAGGAGATGGAGGCGAGCCTGTGCCACGTTACGCTACGGTGCATTCGCTCCTCCGGCGCGTGCCCCGTGATTTCTCCTCCGCGCAGCCGAGCGCTCCAACTAAAGTAGGAAAATCGAGAACAAGCATTTAACTATAGTTTTCTCCTCGGGAACCGAGCCTGTGCTGAGTGTGAAACACACGGCACGAGAAAACGAggctttttctgtgtttttttttacgattCGCCGAGGGAGCGTTGTTGTGCATCATGCAGAGGGGGCACAGTTTCTCTGAGCGCAAATAAAATAATGGGAGAGAAATGAGAAGGAAAACAAAAGCCAAGCGGATTCCCGACTACGAAAATGAAGCGGACGAGGAGGAAGAACAAAAAACGGACGAATTCCACCACGTTCTGCAGAAACGAAGAAAACAAATGTATCCTGCCAAAGAGCGAGCTGAGGGGAACCCATCACCAGCTGCAGCTCGCCAGAAGTTGGACATGAGGGCTTATGAGTTCGACTGCTCTCCTGCAGACTACAACTTCAGCAACACTCACTCCACTTCTGAGcAGGAAGCTGACTATTTGCAGTCATATTCGAAAATGGAGCTGATTGCCATGGTCCTATGCATgcagagagaaatggagagctTGAAAGAGCAACTTAGGTGCCTTACagCATGTGGAAAGCTGGCCAAAAACCTTGAGGCCCTGATCGAGAAGACCCAGATGTGGCCTAATGGGGATAGGAAGCCCTCTCTTGCCGTCTCCCCCAGCCCAGTAAGAGTGCCTGTGGATATGGATGCTTTGATGCCAACTATGCTGTGTGCCCCAACTGTTCTGAATGGGCAGTGGGTCAAGCAGGAGTCTGTGACACAGAAACCTAATGAGACCCCCCATGGGGACGAGCTCTTCTCAGAGtttatCACTCCTGAGCTTTTGGAGAGATGTAACACAGGAACCACTGCCCAGAAGTTGACCAATGATCTGCTCCGTGGACTTTATGAAAGAGACTGCCTGGCCTCTCACTCCATCTCTGGTGTGGTGTACAACAAGAGAGGTCAGCCCAAACCTGCCCTTCCCACTGAGGAGATCCAGGCTATCCTAAGAACTGTCCAATATTTCTTTCCTGGGAAGACTGACGCAGAGATTAAGGGCTACATCCGTCAGAAACTTCAAAATGAGGCAAAACGATTGAGGAAAAAGCCTTCACTCCCTGGCCCAGAATCTAGAGCTTTGAGTCTGCCTGGCCCAATATTGAATGCTCCTCACTTGGAATTGATTGGACAAAAGTCCATCGTTTGATTAGTAGTCAACAGTTTTGTGTCGTCTGATGAGATAACCTAATTCAGTGTTAAATATGGTCAGGAAATAAAATTCTTGACTCATACAAGATTGATGAGAGATGATGTATACATGATCCTTGCCAtcacacaaaaaacatgtatttccaAAATGAACAACTTTGCAGGAGAAGGTGGGGAAAACTGCTTAAATTTAAATGGACTTCCTGTTTGTCCGTTCGTAAAATCTTCACAGATTCATATTGTTAACAGGtcaaaaacttgaaaaatggagatacaaggtttttgtatGAGGGCGgctatttaaaattaaattaatctcATGTTATGTTTGGGTTGTCCTTGAGAATGTCACGATCACTTGCAATAGTTGTTTGGATACTGATCGTTGTGACAGTATTGATgtcaaaatgcaaataaaataatttaaattgaaGGTCTCCTAAGAGCACAGTCGATAGAATTAGAAATTATTAATGTGAGTCTGTAAACGTTTTCTTTTTGTAACGTTTTGTATTTAACAGATATGCAGTTGCTACACTGCATAACGTCAGCCGGTGTGgacatttattttcattgtattttaaatgtatttcttacTCTATTACGGTCCCTATGACAAACGTAGCTTTATGTATGTATTCTTTTGTTATTAAATCAAAATGGAAAGCAAACAAA
>XM_007259160.3
GACGCCCTAAAGGCTTCTGAGTTCACGTTTCTGGCGAATCTAACTTCTCCGAGCTGCAGGTAGAAAGAAGTGCAGGGTAGCACGGAGACcccgggagagagagaggagcagaggGGGAATCCGTGCAGAAACGGGAGCCGCTGGCACTTTAATAAAGCGGTGCTGCGATCTGTTGTGGCGAGCCCGCGGAGCGTGGGATCACGTCCACGTCCTGTTGATCGCGGAGGATCTGCTGTGAGCTCTTTAAAGAGGAGATGGAGGCGAGCCTGTGCCACGTTACGCTACGGTGCATTCGCTCCTCCGGCGCGTGCCCCGTGATTTCTCCTCCGCGCAGCCGAGCGCTCCAACTAAAGTAGGAAAATCGAGAACAAGCATTTAACTATAGTTTTCTCCTCGGGAACCGAGCCTGTGCTGAGTGTGAAACACACGGCACGAGAAAACGAggctttttctgtgtttttttttacgattCGCCGAGGGAGCGTTGTTGTGCATCATGCAGAGGGGGCACAGTTTCTCTGAGCGCAAATAAAATAATGGGAGAGAAATGAGAAGGAAAACAAAAGCCAAGCGGATTCCCGACTACGAAAATGAAGCGGACGAGGAGGAAGAACAAAAAACGGACGAATTCCACCACGTTCTGCAGAAACGAAGAAAACAAATGTATCCTGCCAAAGAGCGAGCTGAGGGGAACCCATCACCAGCTGCAGCTCGCCAGAAGTTGGACATGAGGGCTTATGAGTTCGACTGCTCTCCTGCAGACTACAACTTCAGCAACACTCACTCCACTTCTGAGGAAGCTGACTATTTGCAGTCATATTCGAAAATGGAGCTGATTGCCATGGTCCTATGCATgcagagagaaatggagagctTGAAAGAGCAACTTAGGTGCCTTACagCATGTGGAAAGCTGGCCAAAAACCTTGAGGCCCTGATCGAGAAGACCCAGATGTGGCCTAATGGGGATAGGAAGCCCTCTCTTGCCGTCTCCCCCAGCCCAGTAAGAGTGCCTGTGGATATGGATGCTTTGATGCCAACTATGCTGTGTGCCCCAACTGTTCTGAATGGGCAGTGGGTCAAGCAGGAGTCTGTGACACAGAAACCTAATGAGACCCCCCATGGGGACGAGCTCTTCTCAGAGtttatCACTCCTGAGCTTTTGGAGAGATGTAACACAGGAACCACTGCCCAGAAGTTGACCAATGATCTGCTCCGTGGACTTTATGAAAGAGACTGCCTGGCCTCTCACTCCATCTCTGGTGTGGTGTACAACAAGAGAGGTCAGCCCAAACCTGCCCTTCCCACTGAGGAGATCCAGGCTATCCTAAGAACTGTCCAATATTTCTTTCCTGGGAAGACTGACGCAGAGATTAAGGGCTACATCCGTCAGAAACTTCAAAATGAGGCAAAACGATTGAGGAAAAAGCCTTCACTCCCTGGCCCAGAATCTAGAGCTTTGAGTCTGCCTGGCCCAATATTGAATGCTCCTCACTTGGAATTGATTGGACAAAAGTCCATCGTTTGATTAGTAGTCAACAGTTTTGTGTCGTCTGATGAGATAACCTAATTCAGTGTTAAATATGGTCAGGAAATAAAATTCTTGACTCATACAAGATTGATGAGAGATGATGTATACATGATCCTTGCCAtcacacaaaaaacatgtatttccaAAATGAACAACTTTGCAGGAGAAGGTGGGGAAAACTGCTTAAATTTAAATGGACTTCCTGTTTGTCCGTTCGTAAAATCTTCACAGATTCATATTGTTAACAGGtcaaaaacttgaaaaatggagatacaaggtttttgtatGAGGGCGgctatttaaaattaaattaatctcATGTTATGTTTGGGTTGTCCTTGAGAATGTCACGATCACTTGCAATAGTTGTTTGGATACTGATCGTTGTGACAGTATTGATgtcaaaatgcaaataaaataatttaaattgaaGGTCTCCTAAGAGCACAGTCGATAGAATTAGAAATTATTAATGTGAGTCTGTAAACGTTTTCTTTTTGTAACGTTTTGTATTTAACAGATATGCAGTTGCTACACTGCATAACGTCAGCCGGTGTGgacatttattttcattgtattttaaatgtatttcttacTCTATTACGGTCCCTATGACAAACGTAGCTTTATGTATGTATTCTTTTGTTATTAAATCAAAATGGAAAGCAAACAAA
>XM_015608359.2
TGTGAGGTTGGGCCTGCTCGGGCCACACTAATTATTTGTGTCGACGCCCTAAAGGCTTCTGAGTTCACGTTTCTGGCGAATCTAACTTCTCCGAGCTGCAGGTAGAAAGAAGTGCAGGGTAGCACGGAGACcccgggagagagagaggagcagaggGGGAATCCGTGCAGAAACGGGAGCCGCTGGCACTTTAATAAAGCGGTGCTGCGATCTGTTGTGGCGAGCCCGCGGAGCGTGGGATCACGTCCACGTCCTGTTGATCGCGGAGGATCTGCTGTGAGCTCTTTAAAGAGGAGATGGAGGCGAGCCTGTGCCACGTTACGCTACGGTGCATTCGCTCCTCCGGCGCGTGCCCCGTGATTTCTCCTCCGCGCAGCCGAGCGCTCCAACTAAAGTAGGAAAATCGAGAACAAGCATTTAACTATAGTTTTCTCCTCGGGAACCGAGCCTGTGCTGAGTGTGAAACACACGGCACGAGAAAACGAggctttttctgtgtttttttttacgattCGCCGAGGGAGCGTTGTTGTGCATCATGCAGAGGGGGCACAGTTTCTCTGAGCGCAAATAAAATAATGGGAGAGAAATGAGAAGGAAAACAAAAGCCAAGCGGATTCCCGACTACGAAAATGAAGCGGACGAGGAGGAAGAACAAAAAACGGACGAATTCCACCACGTTCTGCAGAAACGAAGAAAACAAATGTATCCTGCCAAAGAGCGAGCTGAGGGGAACCCATCACCAGCTGCAGCTCGCCAGAAGTTGGACATGAGGGCTTATGAGTTCGACTGCTCTCCTGCAGACTACAACTTCAGCAACACTCACTCCACTTCTGAGcAGGAAGCTGACTATTTGCAGTCATATTCGAAAATGGAGCTGATTGCCATGGTCCTATGCATgcagagagaaatggagagctTGAAAGAGCAACTTAGGTGCCTTACagCATGTGGAAAGCTGGCCAAAAACCTTGAGGCCCTGATCGAGAAGACCCAGATGTGGCCTAATGGGGATAGGAAGCCCTCTCTTGCCGTCTCCCCCAGCCCAGTAAGAGTGCCTGTGGATATGGATGCTTTGATGCCAACTATGCTGTGTGCCCCAACTGTTCTGAATGGGCAGTGGGTCAAGCAGGAGTCTGTGACACAGAAACCTAATGAGACCCCCCATGGGGACGAGCTCTTCTCAGAGtttatCACTCCTGAGCTTTTGGAGAGATGTAACACAGGAACCACTGCCCAGAAGTTGACCAATGATCTGCTCCGTGGACTTTATGAAAGAGACTGCCTGGCCTCTCACTCCATCTCTGGTGTGGTGTACAACAAGAGAGGAACTGTCCAATATTTCTTTCCTGGGAAGACTGACGCAGAGATTAAGGGCTACATCCGTCAGAAACTTCAAAATGAGGCAAAACGATTGAGGAAAAAGCCTTCACTCCCTGGCCCAGAATCTAGAGCTTTGAGTCTGCCTGGCCCAATATTGAATGCTCCTCACTTGGAATTGATTGGACAAAAGTCCATCGTTTGATTAGTAGTCAACAGTTTTGTGTCGTCTGATGAGATAACCTAATTCAGTGTTAAATATGGTCAGGAAATAAAATTCTTGACTCATACAAGATTGATGAGAGATGATGTATACATGATCCTTGCCAtcacacaaaaaacatgtatttccaAAATGAACAACTTTGCAGGAGAAGGTGGGGAAAACTGCTTAAATTTAAATGGACTTCCTGTTTGTCCGTTCGTAAAATCTTCACAGATTCATATTGTTAACAGGtcaaaaacttgaaaaatggagatacaaggtttttgtatGAGGGCGgctatttaaaattaaattaatctcATGTTATGTTTGGGTTGTCCTTGAGAATGTCACGATCACTTGCAATAGTTGTTTGGATACTGATCGTTGTGACAGTATTGATgtcaaaatgcaaataaaataatttaaattgaaGGTCTCCTAAGAGCACAGTCGATAGAATTAGAAATTATTAATGTGAGTCTGTAAACGTTTTCTTTTTGTAACGTTTTGTATTTAACAGATATGCAGTTGCTACACTGCATAACGTCAGCCGGTGTGgacatttattttcattgtattttaaatgtatttcttacTCTATTACGGTCCCTATGACAAACGTAGCTTTATGTATGTATTCTTTTGTTATTAAATCAAAATGGAAAGCAAACAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108426417 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259159.3 True 2210 mRNA 0.45 7 3802912 3806978
XM_007259160.3 False 2205 mRNA 0.45 7 3802912 3806976
XM_015608359.2 False 2202 mRNA 0.45 7 3802912 3807018

Neighbor

gene id symbol gene type direction distance location
mrpl10 NA coding downstream 26727 3770639 ~ 3776185 (-)
LOC103044690 osbpl7 coding downstream 32420 3749171 ~ 3770492 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding downstream 247693 3545433 ~ 3555219 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding downstream 270523 3403947 ~ 3532389 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding downstream 412334 3382775 ~ 3390578 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding upstream 16900 3823918 ~ 3829363 (-)
ccdc189 NA coding upstream 29605 3836623 ~ 3839557 (-)
LOC103039858 LOC108426464 coding upstream 54556 3861574 ~ 3870176 (-)
LOC103038619 NA coding upstream 76996 3884014 ~ 3893365 (-)
LOC103036928 NA coding upstream 281085 4088103 ~ 4097955 (-)
G34166 pnpo non-coding downstream 21171 3777900 ~ 3781741 (-)
G34159 NA non-coding downstream 73952 3728642 ~ 3728960 (-)
G34101 NA non-coding downstream 403799 3391629 ~ 3399113 (-)
LOC111192350 NA non-coding downstream 613476 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 717506 3060369 ~ 3085406 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 32985 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 73564 3880582 ~ 3883412 (-)
G34230 NA non-coding upstream 96316 3903334 ~ 3903569 (-)
G34232 NA non-coding upstream 103271 3910289 ~ 3910512 (-)
G34238 NA non-coding upstream 117424 3924442 ~ 3924669 (-)
prr15l prr15l other downstream 13720 3783125 ~ 3789192 (-)
G34046 NA other downstream 608535 3181168 ~ 3194377 (-)
G33904 NA other downstream 1493583 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1606817 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1625853 2169023 ~ 2177059 (-)
G34214 NA other upstream 29603 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1164680 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1448601 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2096570 5903588 ~ 5928154 (-)
G34770 NA other upstream 2128817 5935835 ~ 5939400 (-)

Expression


Co-expression Network