pnpo (pnpo)


Basic Information

Item Value
gene id pnpo
gene name pnpo
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3777742 ~ 3781778 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259164.3
ccctggcaGTGGGCGAGGCATCGTATGGTGCAGCGCGGTGTTGTTAAAGTCATCGCTGTTTGTTCACCGGtcgtttatttattaattttacgaCAATTTACCCAGTTTTACTAAATTTCTGTATACTTTAGGCTCTAACAGCTTCGGTTTAGAGTATGACTCTTCTAAACGACACGCGCTAAACTCAGCGATACAGTTACCGATGTTTTATGTAACGTTGTGGCGACGTGATTACGTCACGAAGGGGACTGTGCGCTGTTTACAAGCATGAAACGTGTGCTGAGGTTCAGCAGCACGTTCaggtgcatcagcagcagcagcacagcccGGGTCTCCCCCTGCAGACCTGCTCTATCACTTTATTACCGCGCAGGATTATTATCCTCTCCTTACTGCACCAAGTGGAGCACTGACAGCACAGCAATGGATCTGAGTAACATGAGAAAGAAGTACAAAGGCGACGCGGAGtGCTTTGAAGAGGATCAGCTTGTGTCCCTTGACCCTATAAAGCAGTTTGGCGAGTGGTTTGATCAAGCTACAAAATGTCCTGAAATTGGGGAGGCCAATGCCATGTGCATTGCAACAGCAACCAAGGACGGGAGGCCGTCTGCTCGTATGGTGCTGCTGAAAGGTTATAGCAATGAGGGATTTCGCTTCTTCACAAACTATGAAAGTCGTAAAGGTAACGAACTGGAGAGCAACCCACATGCATGCCTTGTGTTTTACTGGGAACCACTCAATAGGCAGATTCGAATTGAAGGAACTGTAGAGAGAATTCCATATCAGAGTTCCTGCGAATACTTTCACTCAAGACCCAAGAGTAGTCAGATTGGTGCAGTAGTGAGCAGGCAGAGCACTGTGATACCCAACAGAGAGTACATAAGACAGAAGAATGCAGAGTTGGAGGAGAAGTATAAAGACTCTGAGGTTCCCATGCCAGACTACTGGGGAGGCTACATGGTCAAACCTTCTCTGATTGAGTTCTGGCAGGGTCAGACCAATCGGTTACACGATCGCATCGTCTTCACAAAGCTCAAAGACGGAGTGTCTGAACTTGGAGAAATGCAACATTTGGCTGAGGGTGGTTGGGTGTACCACCGCTTAGCACCTTAACAGAGTGTGTATATGAATATGGTGGAGCTGTGTTCTTTGTCAAACCTAAAAAGTATCACTATTGGTGACATGGACATTAATAGGCATCATTTTACAGTAATTGTCAGTCATATGGATATTAAATGTAATAGATAAGGATGTTACTTTAAAAAGACTGATGAGAAGCCATTTAATTTTTACCTGTTAAGAAAATTCTTAAGAAAGTGGTAGATTTTCTAGTTTTAACCGAGTTAAGGATGtacttcaggtcattttaaccgtttaacaaaaatattagtatattaaaGTCTTTTAACATAGATTAATAATTGAAAATATGAACATCATACCCTCCATCAAAAAAAGGGAAAGCACAAGATTCATTTCTGTCATTTGAAATCTGTACTAGGAATTTCtgttataatgtattttatggaATTTTTGTTGTcgtttttgttttgtctgtttttcatTACATGCCTTTAATTGTCTTTAGTGTAGCTACTATTTGTGTCTTAATTATAAGTGCACTTTTAAAACTGTGCCAAACCATCATTACTGTTTCACCTGTTGCAGCTGTAAAACATTACTGCAGTAAAATGACAGCTGTGGTATATGTAAATTTCAGAGTCTGTGATGCAGAATAGtgaatcaataaatatatttaattaaagtaaaa

Function

symbol description
pnpo Predicted to enable pyridoxamine-phosphate oxidase activity. Predicted to be involved in pyridoxal phosphate biosynthetic process. Predicted to act upstream of or within pyridoxine biosynthetic process. Is expressed in several structures, including digestive system; female organism; male organism; nervous system; and spleen. Used to study pyridoxamine 5'-phosphate oxidase deficiency. Human ortholog(s) of this gene implicated in pyridoxamine 5'-phosphate oxidase deficiency. Orthologous to human PNPO (pyridoxamine 5'-phosphate oxidase).

NR:

description
pyridoxine-5'-phosphate oxidase isoform X1

GO:

id name namespace
GO:0042823 pyridoxal phosphate biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008615 pyridoxine biosynthetic process biological_process
GO:0010181 FMN binding molecular_function
GO:0004733 pyridoxamine-phosphate oxidase activity molecular_function

KEGG:

id description
K00275 pdxH, PNPO; pyridoxamine 5'-phosphate oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259164.3 True 1771 mRNA 0.41 7 3777742 3781778

Neighbor

gene id symbol gene type direction distance location
tbx21 tbx21 coding upstream 31628 3728416 ~ 3746114 (+)
cdk5r1 cdk5r1,LOC108426451,LOC103047129 coding upstream 378600 3392308 ~ 3399142 (+)
LOC103043460 LOC108426414,LOC108274136,LOC107754112,LOC107743783,LOC107566616,LOC107691214 coding upstream 435052 3322964 ~ 3342690 (+)
uts2r uts2r,LOC108426413,LOC108273405,LOC107754100,LOC107689263,LOC107552777 coding upstream 595563 3126382 ~ 3182179 (+)
cacna1g cacna1g coding upstream 707911 2730484 ~ 3069831 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 12097 3793875 ~ 3801538 (+)
nfe2l1 nfe2l1,nfe2l1b,LOC107565927,LOC107563780,LOC107743763,LOC107677875 coding downstream 31318 3813096 ~ 3820968 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding downstream 49606 3831384 ~ 3836581 (+)
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107743762,LOC107675023 coding downstream 58168 3839946 ~ 3852019 (+)
LOC103039553 znf668,LOC103039553,LOC108426467,LOC107754087,LOC107675019,LOC107743759 coding downstream 89719 3871497 ~ 3875993 (+)
G34105 NA non-coding upstream 220251 3545453 ~ 3557491 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding upstream 387165 3382988 ~ 3390577 (+)
G34073 NA non-coding upstream 457820 3319714 ~ 3319922 (+)
G33987 NA non-coding upstream 559400 3217004 ~ 3218342 (+)
G33959 NA non-coding upstream 1016227 2760908 ~ 2761515 (+)
G34177 NA non-coding downstream 21201 3802979 ~ 3804577 (+)
LOC103040174 NA non-coding downstream 71667 3853445 ~ 3861449 (+)
G34188 LOC108426464 non-coding downstream 82590 3864368 ~ 3868495 (+)
LOC111192351 NA non-coding downstream 221705 4003483 ~ 4008413 (+)
G34288 NA non-coding downstream 355977 4137755 ~ 4138153 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 118610 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 1720779 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2389723 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2785224 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2792361 983167 ~ 985381 (+)
G34309 NA other downstream 389273 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 1100778 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1910744 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2464868 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2720367 6502145 ~ 6541460 (+)

Expression


Co-expression Network