tbx21 (tbx21)


Basic Information

Item Value
gene id tbx21
gene name tbx21
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3728416 ~ 3746114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259169.3
TGTCATtctgagctttaaaaaaaagttttatagcAGCAACACAACCGGCGTAGTGAAATAATACAAcagcacaaaaaatacaaaacaagaaACGCCGAATCGTATTGCGCAAAATAGCTATGGGACTGGTCGCGGTGTCTGCGTAAaattctctctctgcttttatatAACAGAAGTTTAAGTTTTGCGCAACAGAGTCGGTGCTGAaaattttttggtttgtttgtttttgtttgttgaattttttgtttgattcttttttttagattcgCATGTAAGTTCTGcttgttttgtagtttttattcttcttgttgtttttgcgctagttttttttctcttttctctccgtCTGGAGAAGCCTATGCGCCCGCACGCCTTCAGCTTGGAGCGGCCCTGCGCATGGGCGGCATAGGCGGCAACTTCCAGCCCAACATGCTGAATGGAGCGGACGCGCACGGCTTCCCCAAGGACGTGGACGCGGCGCACCGCGAGAAGCTGGGGCTGCACCACCGGCCCGAGCCGCTGGCTGACGGGCACGAGAGCACGCCGCTGCCCTTCCACGCGGAGCAGGGCCGGTTCTACCCGGGCGCCGCGCTCACCAGCTGCCACTTCGGCCGCGGCGGGACGGGGCAGGGGTACGGGACGGCACCGGACGTTTACCCAACTTACCAGGAGCACCCTCACCATCCTCACCACCCCTGCCCCCCTCCTCCACACCATCACCTGCAGCACGGTTATCCCCGCGCGCCCCCGCTGTGCGCGCTCCCCGGCCTGCAGGTGTGCGGCAAGACGCAGGTCCTCCTCAACAACTATCCGCTATGGGCCAAGTTCCACAAGTACCAGACCGAGATGATCATCACCAAGCAGGGCAGGAGGATGTTCCCTTTTCTCAGCTTTAATATCAGTTCTCTGGACCCGTCGGCTCATTATAACGTGTATGTGGACGTGGTTCTGGCTGACCAGCACCACTGGAGGTACCAGGGAGGGAAGTGGGTGCAGTGTGGCAAAGCAGAAGGCAACATGCCAGGCAACAGGATGTACATGCACCCTGATTCTCCCAACACTGGAAATCACTGGATGAGACAGGAAGTCTCTTTTGGCAAGCTAAAGCTCACCAACAACAAGGGCAGCTCCAATAACATGTCACAGATGATAGTGCTGCAGTCTCTCCACAAGTACCAGCCGCGCTTACACATAGTGGAGGTGAAGGAGGATGGAACAGAAGATTCCTTCCTCAGCTCAAAGTCACAATCCTTCATCTTTCCTGAGACGCAGTTCATTGCAGTCACTGCCTACCAGAACGCAGACATCACGCAGTTGAAAATAGACCACAACCCTTTCGCTAAAGGTTTCAGGGACAATTATGACACCCTCTACGCGCCGCCTGACTCGGACCGCCTCACTCCCTCCCCCACGGAGGGCCAGCAGCTCATGTCGGGCAGCTGCTacccccaccagtcttacctGCCTGAGCAGTACATGAATCCCCTGCAGCACAGCCGCTTCTACAGCCGCGAGCCCGTCAGCATGGCCCACCAGGGCCCCAAAGACCCACCTGCCGGCTCCCACGCCCGCTGGTATCTCCCCAGCCAGCAGGCAGTCCCCGCCAATCGCCTGGACCTCAACCCGTACGACGGGGACTATTCAGCCAATAGCCTGTATAAGCCCTTCCCCCTGCAGACGTCGCCCCACCACCCGCTCGGCTATTACTCCGATAGCCCCTTCGCCACCGGGCCAGTGTCCAGCCCCAGCCCCGGGTCCTGGAGCACGGGAAGACCATCAACGCAGTACCTCAACCACCCCCACCCCGGGAAACCCCCCTCCAGCCTCAGCTGGTTACACCCCGTGTCCCCTGCAATCTCCTCCTCTCCATCATCCGTCAATTCTCGCCTGCACACTCCTTCCTCCCTCCTCGAGTCCCTGAGGCTGCCGGTGCTGCAGGACAAGCCCAAGGAGGCCGGAGAGGACCCCTGGATGGAGACGCCATCCGTCAAATCTGTGGACTCAGCCGACTCAGGCCTATTCGAGAGCGGAGAGATTAAGAAAAGACGAGTGTCACCCTACGCCTCCAGCACCGAGAATTCCCCTCCCAACCGTAGCAATGACACTTCAGAGAAGGACAGCAGCAGCGATGCAGGCTACTATGGCTTCTATGGCCACTGAGAGCCATCAGTCACCACCCCACCCAGACTGACCCAGCTGTCTCCCACCCACAGAGCTGCGGTTCCCTCTATGAAAATGAGATAAATATACTGTTATCATGGCTGTGGTTTCAAAAACCTTGTATTTACAGCACCAACAATGCTGGTTTTAACTTGACAGGTTAACTCAAAACCGACCTGCTGCCTGGCCAGAATAATTgttgagaaaacaaaacattttgataATAAGCTCAGATAATAATGCTTAACCTCATTGTTAGTGTATTCAAACTTTTGATCATGAAATcatgaattttaagcatttgaGAAACATCTGAGAAAAGGTGGAGAAGATTGTGAGTACTTTTGCACCACTTCTACAGGTTTGTTCAGATGAATATCTTCACACAATGCAAGAGGCAGtg

Function

symbol description
tbx21 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including heart looping; lymphocyte migration; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; hematopoietic system; integument; kidney; and telencephalon. Human ortholog(s) of this gene implicated in asthma, nasal polyps, and aspirin intolerance. Orthologous to human TBX21 (T-box transcription factor 21).

NR:

description
T-box 21

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259169.3 True 2566 mRNA 0.54 7 3728416 3746114

Neighbor

gene id symbol gene type direction distance location
cdk5r1 cdk5r1,LOC108426451,LOC103047129 coding upstream 329274 3392308 ~ 3399142 (+)
LOC103043460 LOC108426414,LOC108274136,LOC107754112,LOC107743783,LOC107566616,LOC107691214 coding upstream 385726 3322964 ~ 3342690 (+)
uts2r uts2r,LOC108426413,LOC108273405,LOC107754100,LOC107689263,LOC107552777 coding upstream 546237 3126382 ~ 3182179 (+)
cacna1g cacna1g coding upstream 658585 2730484 ~ 3069831 (+)
spata20 spata20 coding upstream 1030380 2639255 ~ 2698036 (+)
pnpo pnpo coding downstream 31628 3777742 ~ 3781778 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 47761 3793875 ~ 3801538 (+)
nfe2l1 nfe2l1,nfe2l1b,LOC107565927,LOC107563780,LOC107743763,LOC107677875 coding downstream 66982 3813096 ~ 3820968 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding downstream 85270 3831384 ~ 3836581 (+)
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107743762,LOC107675023 coding downstream 93832 3839946 ~ 3852019 (+)
G34105 NA non-coding upstream 170925 3545453 ~ 3557491 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding upstream 337839 3382988 ~ 3390577 (+)
G34073 NA non-coding upstream 408494 3319714 ~ 3319922 (+)
G33987 NA non-coding upstream 510074 3217004 ~ 3218342 (+)
G33959 NA non-coding upstream 966901 2760908 ~ 2761515 (+)
G34177 NA non-coding downstream 56865 3802979 ~ 3804577 (+)
LOC103040174 NA non-coding downstream 107331 3853445 ~ 3861449 (+)
G34188 LOC108426464 non-coding downstream 118254 3864368 ~ 3868495 (+)
LOC111192351 NA non-coding downstream 257369 4003483 ~ 4008413 (+)
G34288 NA non-coding downstream 391641 4137755 ~ 4138153 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 69284 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 1671453 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2340397 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2735898 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2743035 983167 ~ 985381 (+)
G34309 NA other downstream 424937 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 1136442 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1946408 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2500532 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2756031 6502145 ~ 6541460 (+)

Expression


Co-expression Network