LOC103046317 (LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772)


Basic Information

Item Value
gene id LOC103046317
gene name LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3545433 ~ 3555219 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259172.3
ATGAACATTCTGTCCTATAGATACTGCTGGAGTTGCTGAGAGGCAACCAAGCCTTTACCGAGCCTTTCATTCAGTATTTGATTTCAGTCTCACGATTCAGAGATTCAGAATGAAGTTCGTTCGCTTTATTATGAAGAGTTCTGCTTTGGCCAACGTGCCTAAACACATCGAGCACTTCTCCAAATTCTCACCTTCTCCTCTGTCTATGAAGCAGTTTCTGGATTTCGGGTCCACAAATGCATGTGAAAAAACGTCATTTGTTTTCCTGAGGCAAGAGCTCCCTGTCCGTCTGTCCAACATCATGAAGGAGATCAACTTGCTCCCCGACAGACTGAGGACAACCCCCTCTGTTCAGATGGTGCAGAGCTGGTATGTCCAGAGTCTAATGGAGCTCCTCGAGTTCTTGGAGAAAAGTCCCGAAGATCACAGTGTTCTAGCAGATTTTGTTGAAACACTGGTGAATATCAGAAACCGACACAACGATGTTGTTCCCACCATGGCCCAAGGTGTGATCGAGTACAAAGAAGTATTTGGTCAAGATCCTCTCACCAATCAGAACATACAGTATTTCTTGGACCGCTTTTACATGAGCAGGATATCCATCCGCATGCTGATCAACCAGcacaCTCTGGTCTTTGATGGTGCCACAAATCCTGTTCATCCAAACACCATTGGCAGTATTGACCCTCATTGCCAAGTCACAGAAGTTGTCAAAGATGCCTACGAGAGTGCCAAAATGCTGTGTGACCAGTACTACCTCAGCTCTCCTGACCTGCTGCTGCAAGAGCTcaacaTTAACAACAGAAACCAGCCGATTAGCATAGTCTATGTGCCTTCCCACCTCTACCATATGCTGTTTGAGTTATTCAAGAATGCAATGAGGGCAACTATTGAAAACCATGGTGAAGGCAGCAATCTTCCACCTATTGAAGTGATGGTGGCCATTGGAGGAGAGGACCTTTCTGTCAAGaTGAGTGACAGAGGCGGTGGCGTGCCTTTCAGAAAGATGGAGAATCTTTTCAGCTACATGTACTCCACAGCCCCGACTCCTCAGCTTGGCGACAATCACGGAGCACCTCTGGCTGGCTTTGGTTACGGGCTGCCTATCTCTCGCCTCTATGCAAAGTATTTCCAGGGAGACCTCCAGCTCTACTCTATGGAAGGCTATGGTACAGATGCTGTCATTCATTTAAAGgcGTTATCCACCGACTCAGTAGAGAGACTCCCAGTGTACAACAAGACTGCCCTGCGGAACTACACCGTGAGCCAGGGGGCTGACGACTGGTGCGTGCCCAGCAAAGAGCCGCTGGACCTGGCTGTGTTCCGACTGGCCAAGTGAAGAGCCATCAGCAGCCTGGAGCCTTCTGGATGAACTAAGAAGAATAGAAGTCCTGGAGCTGGCACTCTGGCACTGGGACCAGTGAGAGTTACGCAGTGCTCTTGTGAAGCCGGACGCTCACTGTGAAGCCTTGTAGCTCTAGTTATCGCATGCAATGGCTTTTTTTCCTCCACACCATAATCAACTCATGAAGTTtttcctttactttttttttttaggttttgttttggtttgagaATTGAGGAAACTACCTTCAGTATCACAGTGTTACCTGTAGACCAAGCATTCAGGAGTGTGAGAAAGCCAAATGTGACCACTTGAAGCTCTTTAAGCTCCGGTAGTGCGTTACGAAAGGGCCAGATGTGCAGAGGTTAGTGTGAGGAAGAGCCTGACTGAGCTGCTAACTTTGTTAGACAGCAGATGGAGAGCAGCGGGCCCTTAAGGGCAGGAACCAGAGTCAGTATTATTATAGGAGGTCCATGTGCAAAACAGCTTTGCGACAGTATGGAAAGAAAGGGACGCAAAGATAGAATCGGAGATTTATATGAAGAAAAGCCCACCAGAAGaatacaagagagagaaagggagagggcACGTGTAATAGCAGATTGTGGCAGCATCATAGCTGTGATTTGGTCATTTGTAAGGAGTTCACAGCTAAGTTTTGCAATAGACGATGCAAatgctagtttaaatgtgtgtttttcaattttactaaaTTCTTCCTCCATGAAAAGTAGTTCCAGCAGGTTAAGATAAAGCAAACAttgcttttgttgttgttgttagtaATTAATAATGTTGACTAAGCAATTAGTGTCAAATGATTCACCTTCGGTTGGGAAAAAGCTCAAAACGTGCTGTTTTTGGATGAAGCAACATAGCTAGATCACTTTTTTTAGTGATTGAAATTGGGTGGTCAGATTAAGCTATTCTTTAATAATCCAGAATTTGATTTACCTTGGATGTCGAATGTCAGAGTTAAACAGGGGCGTTAAGCATGAAAAAAATTAGCTAGCAAATTATCATTGTTAGCATTGGACACATTATTATGTAGACAGTGGACAGTTGGGGAGTGCTGTGTGTACCACTGATTTATTAATGCAATACTAGATAGAAGTGCTAATATTCTGTACAATACTactacatttacatatattagttGACGTGCTGtacagccatcttggattctaagCTCCTGGGTTGGTGAGGATCTCCCGACCTTCCAGAGTAGCATTTCTGTCTTGTAGGAGAGTTCCAGTTAAAGTTACTCCTACATGGAACAAGGAGGTTTCATCATTCACAGTAGAAGCTGTGAAAGACTGTGTATGTGTACGACTATATGAAGCAAAATCGATGTTGGTCCATGTGTGTTAAGACGCTATTAACCTTGGTTTTAGGTCACGTTCTAGTCATGTTCAAGGGAACTGTATCCGTTTCATCCTCTCCACACTCTGTCGGAGTCACAAATAGATCAGCTATCTATAACCAGTGCTTAGAAGAAAAGAGGACCATATTCAGAGGCCAGATCAGAGCACCCTCCTTGGGTTCATGTGAGGTGATGGTGTTATGTTGTCCTATACAAGGGCATTGGCGTTGACAGTGTTCTCATACTGAAAAATCAGATAAGTAAGAAGTATTGAGTGAAAATGATATTGTGTCTGGAACAACCCTCAGTGTAAAAATCAGGAGTGGTGTTCCACTACACGTTGTTGCCAAGTCAGCCAGGCCATCCCTGGCGTATTGCTCTGTTGAAGGGGATTTGAATGTGGTAATTCATTATCCGTAACCTCATTACTTTCATGACTGAAAACACTTCAGGCATTTACAGTTTGATCTTTTTCAAAACCGCTGTTTCTTGCTTGTGAGTTTATTCTTCCATATTCTGTATAATGTTCTTGCTCAGCAAGAATGTAAATATGCAGCACGCCCATCTTTAGCCTTTTTCTCAAGCGTTTGGATGGGTGTTAGAAGGCCTTAAGGTTTCGTAAGCTTTCAGCAGCCTTTTATTGTTCAGCTTGCAATGATTCAATTTATGtattaaatccattaaaataaCATGGATTTTGTTTCCATTGTTTAAATTCTGTGCCTCTTATTTCAGAAAAGAACCACATACACTGAATGTACTGTTCAACATATACCTTGCAAGCCTTTAAGGaccatattttgtgtgtgtatttggatttgatgtgtgttttagatttttttttttttttttactaaactttTAACTCCTTAATGACTGAAAGAGAGTTAATATTTTGGGAATAAAATCTTTCCATATTTTCCATTGTATATGTAATGGATGTGCATATAATGGAAATAAACATGACAtttcattaaatataa

Function

NR:

description
pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 2, mitochondrial-like

GO: NA

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259172.3 True 3691 mRNA 0.42 11 3545433 3555219

Neighbor

gene id symbol gene type direction distance location
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding downstream 13044 3403947 ~ 3532389 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding downstream 154855 3382775 ~ 3390578 (-)
ogfod3 ogfod3,LOC106959269 coding downstream 164834 3340612 ~ 3380599 (-)
LOC111192418 NA coding downstream 322435 3221347 ~ 3222998 (-)
dhx8 dhx8,LOC107706906 coding downstream 907682 2624938 ~ 2637751 (-)
LOC103044690 osbpl7 coding upstream 193952 3749171 ~ 3770492 (-)
mrpl10 NA coding upstream 215420 3770639 ~ 3776185 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding upstream 247693 3802912 ~ 3807018 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding upstream 268699 3823918 ~ 3829363 (-)
ccdc189 NA coding upstream 281404 3836623 ~ 3839557 (-)
G34101 NA non-coding downstream 146320 3391629 ~ 3399113 (-)
LOC111192350 NA non-coding downstream 355997 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 460027 3060369 ~ 3085406 (-)
G33944 etv4,LOC107743788 non-coding downstream 942244 2574387 ~ 2603189 (-)
G33939 NA non-coding downstream 1001322 2515287 ~ 2544111 (-)
G34159 NA non-coding upstream 173423 3728642 ~ 3728960 (-)
G34166 pnpo non-coding upstream 222681 3777900 ~ 3781741 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 284784 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 325363 3880582 ~ 3883412 (-)
G34230 NA non-coding upstream 348115 3903334 ~ 3903569 (-)
G34046 NA other downstream 351056 3181168 ~ 3194377 (-)
G33904 NA other downstream 1236104 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1349338 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1368374 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 1503130 2022071 ~ 2042303 (-)
prr15l prr15l other upstream 227906 3783125 ~ 3789192 (-)
G34214 NA other upstream 281402 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1416479 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1700400 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2348369 5903588 ~ 5928154 (-)

Expression


Co-expression Network