myo1d (myo1d,si:ch211-94l19.4,LOC107743773)


Basic Information

Item Value
gene id myo1d
gene name myo1d,si:ch211-94l19.4,LOC107743773
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3403947 ~ 3532389 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259173.3
AGGCTTATGGCACTCCAGCGGCCCGCCAGTCCACTACAGCAGCCGGAGGCAACAAGTAGCTGGAAATGATCAAGGGCTCATGAGGAGGAGGCACGTTTTCTGGTGGACTTTTGGACGGAGAAAATAAGCAACCGGAAAAACTCCAGTTTTTGAGGAGGGAGGAACATGAGGAGAAAGTAAAGctgaagttttattttattctgctgGAGAATGCTGTAGAGCTGCtggttctcctcctcctccttcttttcTCGGCTGTGTGGACTATTGTACTGTTTACCTCGCTGAAGTTCAGCGCTGTAGAGCTGCCAGCAGAGCCGTGGGTTTCATTTCTGGACAGAGCACATCATGGCAGAGCACGAaagtttggaatttgggaaggCGGACTTCGTTCTTCTGGACAATGTGTCTCTGGAGGAGTTTCTGGCCAACCTTAAACTCAGGTTTGAAAAGGGTCGCATCTACAGCTACATTGGGGAGGTGGTGGTGTCTGTGAACCCTTACCGTGCCATGAACATCTACGGGCGGGACACCGTCGAGCAGTACAAAGGCCGGGAGCTGTACGAGCGCCCGCCACATCTCTTTGCCATCGCAGACGCTGCATACAAAGCCATGAAGAGAAGAAACAAAGACACCTGCATCGTTATCTCAGgggAGAGTGGAGCTGGTAAAACAGAAGCCAGTAAATACATTATGCAATATATCGCTGCTATTACCAATCCTAGCCAAAGAGCAGAAGTGGAGAGGGTAAAAAACATGCTGCTGAAATCCAACTGCGTCCTGGAGGCTTTCGGAAATGCCAAGACCAACCGCAATGATAACTCGAGCCGCTTTGGAAAATACATGGATATTAACTTCGACTTTAAGGGGGACCCCATCGGTGGCCATATAAATAACTACCTACTGGAAAAGTCTAGAGTGATCTTCCAGCAGGAAGGAGAGAGAAGTTTTCACTCCTTCTACCAGCTTGTGAAAGGAGCTCCCGAGTCTTTGCTGCGATCCTTGCACATTCAGAAAGACCCCACAgcttacaattacattaaagttggaggCATGATCAAgTCCTCCATCAATGACAATGCAGAGTTTAAAGCTGTAGCAGATGCCATGAAGGTGATTGGCTTCACCACAGAGGAAGTTCATACAGTCTACAGGATCCTGGCTACCATTCTGCACCTGGGCAATCTGAAGTTTGGCAGTGATGGCGATGTGACTCTGATTGAGAATTCGAAGCTGGTAGCAGTGCTGGGGGAGCTGTTGTCCACTAAAGAGGAGAATGTTGAGAAGGCCTTACTCTACCGCACTGTTGCAACGGGACGTGATGTCATTGACAAGCAGCACACGGACAAAGAGGCCAGTTACGGCCGGGATGCTCTAGCTAAGGCTATTTATGAGCGCCTCTTCTGCTGGATTGTGGGAAGAATCAATGATATTATTGAAGTGAAGAACTATGATGCAAGAGTCCATGGGAAGAACACAGTAATTGGAGTGCTGGACATATATGGCTTTGAGATTTTTCAGAACAACAgcTTTGAGCAGTTCTGTATTAACTACTGCAATGAAAAGCTGCAGCAGCTCTTCATTCAGCTGGTGCTGaagcaggagcaggaggagtATCAGCGAGAGGGCATCCCATGGAAACATATTGATTACTTCAATAATCAGATTATTGTGGACCTGGTGGAGCAGCAGCACAAGGGAATCTTCTCTGTTTTGGATGAGGCCTGTATGAACGTGGGGAAGGTGACGGATGAGATGTTTCTCCAGGCACTCAACGGCAAACTGGCCAAGCATGCTCACTACACCAGTCGCAAGCTGTCCCCAACTGACAAGAGTCTGGAGTTCGACCGAGACTTCCGCATCCGTCACTATGCAGGGGATGTGGTTTACTCTGTGGTGGGTTTCATTGACAAGAACAAGGACACCCTGTTTCAGGACTTCAAGAGGCTGTTGTACAACAGCTCGAACCCTGTTCTAAAGGCCATGTGGCCTGAGGGGAAGCTGAGCATCACAGAGGTCACCAAGAGACCCCTCACAGCAGCCACGCTCTTCAAGAACTCCATGATCTCACTGGTGGAGAACCTGGCCTCCAAGgAACCATACTACGTGCGCTGCATCAAACCCAACGACGTGAAGTCTCCTCTGCTGTTTGAGTATGAGCGCTGTAAGCATCAGGTGGAGTACCTGGGCCTGCTGGAAAACCTCAGAGTGCGACGTGCGGGCTTTGCCAACCGTCAGACCTACCCTCGCTTCTTGCAGAGGTATAAAATGATCTCGGAGTTCACGTGGCCAAACCATGACCTGCCGTCGGACCGAGAGGCAGTGAAGCGTCTGCTGCAGGGCTGCGGGTTTGAGCACGACGTGGCCTACGGCAAGACCAAAGTGTTCATCCGCACGCCTCGCACCATCTTCAGCCTGGAGGAGCAGAGAGCCGAGATGGTGCAGAGGATCGTCCTCTTTCTGCAGAAGGTATGGCGTGGCACGATTGCAAGGATGCGCTATCGTCGGATGCGGGCTGCACTGATCATTCTGAGAGCGTACCGGCGCTACAAGGTGAAATCCTACATCAAGGAGGTGAACCGACGCTTCAAAAACGTACGCAGCATGAAGGACCACGGCAAACACGTGAAGTGGCCAACACCTCCCAAAGTCCTGCGCAGGTTTGAGGAGGCACTTAGGAACATCTACAACAGGTGGTGGGCCTGGACCCTCATTAAAGGTCTGTCTCCAGAGGAGATGTTACAAATCAGAGCTAAAGTGGCCACGCTGGAGTGCCTGAAAGGTCAGAGGGCAGACCTCGGCCTGCAGAGAGCCTGGGAGGGCAATTACCTGAAGCGGGATAGTCCTGAAACAGCATCTTCTTTCACACTGGTGTCCAGTGATCTTCAGAGGAAAGATAAGTTCATGAGAGTCCTCTTCTCCTGCAATGTTCGGAAGATTAACCGCTTCAACAAGGCAGAGAATCGGGCAGTGCTGATCACAGATCGCCACCTCTACAAGATGGACCCACTGAAACAGTACAAGCCAATGAAGAGCATCCCACTCTACAATGTGACTGGCGTGAGTGTGTCCCCGGGGAAAGACCAGCTGGTTGTCTTCCACACCAAGGACAGCCGGGACCTGATTGTGTGCCTGCAGGGCATGGTGCCTGCGGGGGAGAGCCGCATAGGAGAGCTGGTGGGCACCCTGCTCAGCCACTTCAAAAGTGAGAGGAGGAAGCTCCAGGTGAACATTGTGAGTCCCATTCACTGCAGTATGAATGGGAGAAAGTGCACGGTGGTCGTGGAGACCAGGATCAACCAGTCACAGCCCGACTTCACCAAGAGCCGATCAGGTTACATCCTAGCAGTACCGGGAAACTGAAGGATGATGACGGGCAATGCAGGATGTCTCCTGATGTCATCATGTCAAGATACGGTTCTGCACAGCATCAATGTTTAAGCCATACCAAATTTGCCTTAATTAAAGgcaatgctttttttgtttgtttgttttgtttttttggaaccACAGATTTTTTAAAGAGGACACTTCATGTGTAGGAATATCCCTGAATGTATATTCCGGCTCAGAATGAGATGCATAATAATGAAAGATGAGATGATTCAtcaaaaaaaagatgaaatgcACTTAATTTTCAAAAAGATTCTATGAGATTGATGAGgcatcatatttatttaccattttAGCCAAATGAAGGGACACatacatataatatttatagGAATCATGGTATGCAAGGCTTCAAAATATCTAGCTCGTGTTTTGATATGCTGGTAAGGGCTGTTCTGTTCTTTAAAGagaatatttctgtttttgatATCGTGTTCGTTTGGGATCAAGTATGGCTATGTTTTGGATATGATATGTATATCACAGCTCCTAGTGGCCATGTAGCAGACGCAAAGACTTGTGCACCGCAGGTTTTGTAGAGGGATATGTTGAGCATATCCGTGACGTTCCTTAAGTGCTCAGAGAGGAGCATTAAAATCTctcttaaaaacttaaaacttaaaaacttgTTATGCATATTTTCAGTTGTGCAGATGTAAAGGGggattatatattgtttatataggTAACAGTTACACAGCTGAATTTATCAGGCTGATGTTATTAGAAACTGtcagttctaaaaaaaaaaaaaatctattggctTTAATGGCAGTGTAGATGCTTCTAGCTAGATGTGACTGAAACATTTAGAGACGTCTTTCTATTAAACATCAATCCTGGAAGGAGCCCATAGTTGAACCTGCCTTTAGCAGAGCCATGCTTTCTTCTGCATTAAGCCACAGTGACATTAGGCTTCTGTAAGCGATATTCTATATGGTTGAAATTGCATTAATTTGAATATTTATCACCATTAGTGAATTTGAGCgcaaatgttttacttttgtttgGTTGTGCTGATCTTGATGCAACCATGGCCCCACCGCTGCCCCTTCCACAGCGAGCCTCTATATGTGAAAGGTCATTGGATAGACATATGTAAGATACATATGAAGATATACTTCAGGAGACCGCATGGGAATCCCCACACTTGTGTAAGTCATGTGGTATTGCCTTGTAATTTAGGCTGAACAAGACGTGATTTAATTATCAGAGGAACAGCCTCATATTAGGTGCCAAATGGATGGGATGTTCTATTTCCAAAAACAGAGctgacatttaacattcctcagtcCAGATTGGCACGTGTGTACCAGAAATATATCATAAAGgaaattaccacccacagtgaacagcaAAACGGgcggtaatgatcatgaccagtggtatctggctggaattgtccgTGCAAACAAAGGATCTAATCACCAGCAGTGGACAGCGAAGTGTCTGGTTACATTATCAATTCGAATCACTCATTGCCACAAACCTCAGCTCTTATGTGcagtagtatattatattatattgtgttaAAATTTAGTGtgcgatactgtgattctgtggtTTAACATGAGTCCGACAGTTGATTCCTAAATTAGCTTGCTACGTTTTCTAATGTGCATCTAATGTGACTGCGGCTTTAATCAGGCAAGAAAATGCATTTCAAGGTTAAAACCTGACTCTTATTAACTCTTATTAAgactaataacaataattaataacatGGTACAGTTCTTACTGTAGGCAGATAAAATGttcaaatttatatatatattttttttttgcatttttgatcATTAGATATAGTATAATTGGTATGGCATGAATGAAGATTGTAGATTGTGGGACCTCATGTGTGCTGATTGATGTATAACTTTGTTTAACTTTGTCGACTCATATGAACTGAATCAGGACTGCGCGGTTCTAAGTGAAAGCTCCCAGAGTGTCTGGCCTAGTTTTAAAGAGACGTTCTCTGAGAGAAGACGCAAGTGCCACTGAACAAATTGGCTGCTGGTCTTTTGTTCCATTATAATTACTGTTCCATTGTACTCTTCTAACTGTGGGGTTTGGgagaccaaaaaaactttaatcagAAGACTAGGATCACAGCAGTTGGCCAAAATAATTTCTAGCTTATGTCTGTGTTCATCTGCGCTCTGTGATTCTGAAATGTGTCTAATTGATGGGATGTAGGTTTGCAGAAGGAAAGCCTTGGGCAGTATTTAAAGGCTGATCCAGGCAATTTTCCTTGTATAGCTCCTGTTTTAACAAGAGCTGCTCAATTTATCATTTTAGCACCATCATTGCAATTTGCAGTGGTCATGTTGTAGGATGTGGAATGTCATAAATGGTATATTAAGTCATAcatgtcatgaaaaaaaaatccatactgCTCTAATTTTACATGGTATATTTATCAGTacccaatatcatttattttactttgatcATTGATAAACATAGTGCATTAATACCGTTTATCATACCTCAGATCATTGAATTCTAGAGAAATCAGGTGAAAAAttctgtaattttttaaaaaagttgcaGTATGCATTATTATacaacaatataatattttttccagTATCCAGTACATCCCTAGTTTTAACCTAACCTAAGCCTTCTGATGGCTCTGTTGCTCAAATTCATCCTTGAACAACTTGTATTCCTTATGCTCTTTTGTctttgtgtatatgtatacGTGTGTCTGAAGCAATTCGCTTGCATTAGAACAAAGTGAAAGCTAAAAAATGTGGTGTTGCCCCTCGTTCATCATCTCCCTTGTCTTGTCTCTGTGCTCTTTGTCTTTGTCCCTGTgttgtctctatctatctgtattgTGTCTTTTGGCTGTATGCCCTGGCTGGGTAAACTCTGCCACCGTGCAtagtgggagagagaaagacaaaacacAACGTACCCCCATGCCATGAGGAGAGCGAGCCAGACGCTACAGCC

Function

symbol description
myo1d Predicted to enable actin filament binding activity and microfilament motor activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be active in several cellular components, including actin cytoskeleton; microvillus; and vesicle. Is expressed in notochord and tail bud. Orthologous to human MYO1D (myosin ID).

NR:

description
PREDICTED: unconventional myosin-Id-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10356 MYO1; myosin I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259173.3 True 6354 mRNA 0.45 22 3403947 3532389

Neighbor

gene id symbol gene type direction distance location
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding downstream 13369 3382775 ~ 3390578 (-)
ogfod3 ogfod3,LOC106959269 coding downstream 23348 3340612 ~ 3380599 (-)
LOC111192418 NA coding downstream 180949 3221347 ~ 3222998 (-)
dhx8 dhx8,LOC107706906 coding downstream 766196 2624938 ~ 2637751 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding downstream 1120963 2276757 ~ 2282984 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding upstream 13044 3545433 ~ 3555219 (-)
LOC103044690 osbpl7 coding upstream 216782 3749171 ~ 3770492 (-)
mrpl10 NA coding upstream 238250 3770639 ~ 3776185 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding upstream 270523 3802912 ~ 3807018 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding upstream 291529 3823918 ~ 3829363 (-)
G34101 NA non-coding downstream 4834 3391629 ~ 3399113 (-)
LOC111192350 NA non-coding downstream 214511 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 318541 3060369 ~ 3085406 (-)
G33944 etv4,LOC107743788 non-coding downstream 800758 2574387 ~ 2603189 (-)
G33939 NA non-coding downstream 859836 2515287 ~ 2544111 (-)
G34159 NA non-coding upstream 196253 3728642 ~ 3728960 (-)
G34166 pnpo non-coding upstream 245511 3777900 ~ 3781741 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 307614 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 348193 3880582 ~ 3883412 (-)
G34230 NA non-coding upstream 370945 3903334 ~ 3903569 (-)
G34046 NA other downstream 209570 3181168 ~ 3194377 (-)
G33904 NA other downstream 1094618 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1207852 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1226888 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 1361644 2022071 ~ 2042303 (-)
prr15l prr15l other upstream 250736 3783125 ~ 3789192 (-)
G34214 NA other upstream 304232 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1439309 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1723230 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2371199 5903588 ~ 5928154 (-)

Expression


Co-expression Network