cdk5r1 (cdk5r1,LOC108426451,LOC103047129)


Basic Information

Item Value
gene id cdk5r1
gene name cdk5r1,LOC108426451,LOC103047129
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3392308 ~ 3399142 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259175.3
acacacacacacacacacacactatcagcacagcacagcacagcagcgCGTGTACGCTCTTCTGTACAGGCGCGCGGATATTCTCCTTGCTTTGGCGGAGACGGTGCTTTTCCATACTggattcattgttttattttgcgtTATTTAAGCTAACAGCCTGTGATTCTCCATATTATCATCTTTATTATCATTTCCATCGCGGTGCTAGAGCGGATCCTCTCGTGTCACCTTGATGCGCAGCATATCGGAGCATCCACAGACAGCCATTACTGCGGATCTGCTGTCCTCTCattcacagcagcagcagcagcagcatcaccaGCGTACAGTATTGCAGTAAAACAAATCAGGATCAAAGAAGGAACTCATTCCGCAATTATCCACCCAGACACTACTGTTCTTCGGGTGTGAACACCAATTCAGATTTTTGATGCTGAACTTACACTGAGCCTGGCGTCTGGGTCTCTAGTTGTGGAAGCATTGAGGCGGGACCCTCAGCTCCAGTGCCAGTTGTATTCTGTGGTCATTTCCTAACCTAGAGACCCTGCCCATCGTTCTCTGGCATCATGGGAACCGTCCTTTCCCTCTCACCCAGCTACAGGAAGGCTGCCCTTTTTGAAGATGGCCCAGCCACGGTGGGTCACTACACGGCCGTTCAGAACAGCAAGAACGCCAAAGACAAGAACCTGAAGCGACACTCGCTGATCAACGTCTTACCGTGGAAGCGGATAGTAGCGGTTTCAGCTAAGAAAAAGGGCTCAAAGAAAGTGCAGCCCAACACCACCTACCAGAACAATGTCACCCACTTGAACAATGAGAACTTGAAGAAGTCGCAGTCCTGTGCCAACTTGTCTACGTTTACTCAAGACCAGTCAAGCCCTTCAAACCAAGGCTCCAAAAGCTCCAGCAATGTGGCCTCCTCGGTCAAGAAAGCACCTCTGTCCAGCTCCAATGTGGCACCTGGTACACCTAAGAGGGTGATTGTCCAGGCCTCAACCAGCGAGCTCCTGCGCTGCCTGGGGGAATTCCTGTGCCGGAGATGCTATCGCCTCAAGCACCTTTCCCCCACCGACCCAGTGTTATGGCTGCGCAGTGTGGACCGTTCCCTACTGCTGCAAGGCTGGCAGGACCAAGGGTTCATCACTCCAGCCAATGTAGTGTTTGTTTACATGCTCTGTCGGGATGTTGTCTCATCAGAAGTGGCCACAGAACACGAGCTGCAGGCAGTGCTTCTCACCTGTCTCTACTTGTCCTACTCCTACATGGGCAATGAAATCTCCTACCCACTCAAGCCATTCCTGGTAGAAAGCTCCAAGGAGACCTTCTGGGACCGCTGCCTGTCCATCATCAACCTGATGAGCGCCAAGATGCTGCAGATCAACTCCGATCCACACTACTTCACCCAGGTCTTTGCGGACCTCAAGAACGAGAGCCagaaagaggaggaaaggagCCGCTTACTCATTGGGCTAGACCGGTGAGGGAATGCTGAAGCGGGTTTTGGCGTGGAGCTGCACCCTTGTCTGGCATTTTTGAAAGGGTTTCCAAATTAATGGATTGACAAATGTGGGAGAGCACATTATTAAAGCTTCCTATGAGAATTCTGAGAAAGTGTCCAGTATTTAATCACTGTACAAATGAACCATTACACTATTGAAAACAAACGTGCCAAGAAGGGTCATAAAAGAACTTTGAAGATCCTTTCTTATATAAAGATTTAGAATGTCTAAATCCTCACAAAGTTTTCCAAACTATAGTATTTAAGGAACCTTTGTTTTCAGAGCTGAATGTTCAAGTCTGTGATATGATCAATGGAAACTTTGGACAATTTAAACTGTTTGATTTTAGGCCTTTCCTAGATTTTTAATTGGCCTGACCCAAACAGAAATGCCAGACGCTGGATGCACTCAAGTAGTCTCATATGTTAAATATTCAAAATCACAGACAAAAAACAAGTCATCAACAAGGTCATAAATAGagaaaaaatcaagaaaacacCTGAGTAGGAACACCAATTTACAGCTATGAATGTGGAGAGGCCTCCTGCTGCTGTCTATCTAGCCACTACTGGACTACTGGAGATGTGCACTGCTTTTTTGTGGAAATGTTTCTGCCGGACTGTTCCAACAATAAGAACAAAAtaagactgtgattaaaaggCAGAGGACATGCACTCCTAAACTGCGGCCATGCTGTTTGGATGCTCACCGAATGATTAAACACTTTTGGCTATAGTAGCATTACGTCCAAACACGTCCACGTGTCCACAGGAAGGAAGAGGCATGCTCCAGTGATCTgtgtacatatatgtatatttctgTATGTCTGTAGAGAGTTCATGGATGCCACAATCGGATGATTTCTGAGAAAAATGTCAGCGTTGCACGGTGAGGTTTAACAAATGAAAGGTGTGAGGCGCACTGAAACGAAGGACCTACTTTATTTTCATCTACAAAACACAATTAAGTGGATGTTCTACTCTCCCTAGGTGGGCTTTTTCCATTAGTTTACATGGTTCACATTCTTTTCTACTCAGAAATATAACCGAATGCATGCATGCCATGCAATTTGTATGGCATTTTGAGGgcataaaaacttaatttacttCTTTCCATTgaatttgcatttgcatttagggaatgctctttaaaaaaaaggcaaatctAGTTTATTTAGCTATGCTTGCTACAATGAGCCATGATCTTACAAAGTATCTTTAGTTGTTTTGTCTTAAGTGTCACTGTCTAGTTTGAGCAAGAGTccatagaaaaaaaagcaatgtaataaaaaaaagctaaatgtaattttacagaAACAGTGCCATACCTTTGATAAAAATCATGTAGGTCTAAGAAACACACCAAAGGAGGGTGATCTTTGAAACGGTTCATTACTACTGAGAATATCTATTCACTCTTaatttattgctgtttatttattctctTAGCACATCccttgtatttaaaaaaagtgtagtattgtattgtacagATGAATGGTACAATGGCTACTTTCATGTGTAGCATTTAGATGTAGGTGATTTGGGGCAGACATGATTACCTTTGGTGGAAATGAAGATTGTAGTTGATGCAAATGTGCATTGGAAGGATTTAGCTAAGGATGTTCCATCGGGGAGCTTAGTTGAAAATCTATTTCAAATCTGAGCATCGCCAAGGGTAGTTCATCAGTTACACGAGGAACAAGAAACTGTTGGTTTCAgaccattttctctctctctttctctctttctgacctGCACCATAAGTCCATTCTGGTTCTAAACTGCTGGGACATTCCACATATCAATAGCCGAAAAGCAATCACTGGCAGGCAGTCTATTTCTGTCTTAAAGTCATTTCATGTCACGGTAGAAAATGACAGCCTGAGAGAGCGATTACTCCAACATAAGCCAAACATTAATGGAACACGGTTCCCTGCGGTGGACTGGATGAGATGGGGCTGTGGGGTCAGTTTGTAAGACCTCTGTCCAGATAAAGCAGGATTTTAGCTGGACAAGCCATGCTTGGAAATGTCTGACATGCGGAGCTTAAGGACCAAAATGTCACTGAATGAAACATTTATCCGAAGCTGGGGATTTTATTTTGTGGGCGTAATATGCTGCTTACAactttatttctaaatttgGATAAATGCGATTGTGATTATGTCAATGTCAGATGCTGCAAGGAAAGGAACATTTTATTACTTCATTGTAGGAGGTTGAGGTATATTGAGTCATCCAGCTGAATTCTCATCAaacgaggaagaggaggagtttACAGATGGTTGATGTGTAATTGCCCGATTTCTGATCATCTCAGCAGTGATAAACTACGCATGCTTTCTTTTAGTAGTTGTGtatctcagattttttttttacagagctaggAAACGTAGTAAACGTCATATAAACAGACGTGATCATTCATCCTTGGACAGTATGAGTACATATGATGGCTGTGTGGTATTAACAATGCCCCTGAACTGCAGAATGTGTGGAAACACTGGATTGGCATGGTTTTTGCTCCTCTCTGCTGCCTTGTTGTGTCTGACAGAGGGCATGCGGGAATGTAGTGGAGGATGTGAGAGGTAGTAATGTGGTGGCTAATGTGCACTGAGTGGGTTCTGAATAAGACTGCTGAGTAGCGCCATAGGGACTAGCACTTTTCTCTGGATTCAGCTCAGAGGAAACTAAAGGGGCTTTTAAGTCTTCAGGCCTAATACAGGGGAGTCCTCCTTTGCTGCCTGCCATCAGTTGCCACCACTTCACTATGATGTGccatttttcttttcacttaCATCACTGACTTGTCATTTGTAAGAGAggaaacacttttaaaaacttaaaaaaaagacaaaaaaaagagaagtgtACTAGATTACAGcggtcatttttttctgtatctcgtCACATATTTCTTTgtagaacaacaaaaaaagacatgttACAAGTCTTAAAAGAGAGGGGCACTCTCAAagactgcatgtgtgtgtgactgtgtgagaGCTGATTTGTATAGAGGAGtgtctaagttttttttttttcttacggGGGCTGGGGAGAACGTAAGGCAATGCTTTTTAGAGGAGAATTCAACACGGGATGGAGTTTGACTGGTGGGTGGGGTCGGGTTCCGAactgttacatttacattctttaaaaaaaaaaaaggagacaaAGTTGTTGCTGTAATTGAActttttcagtttggttttgcttatttttatttatttttgtactgtGATGGAAAATAAAATGCACTGATCGTTAAAGATGCAAGAAAA

Function

symbol description
cdk5r1 Enables protein kinase binding activity and protein serine/threonine kinase activator activity. Involved in positive regulation of signaling receptor activity; protein phosphorylation; and regulation of macromolecule biosynthetic process. Located in nucleoplasm and perinuclear region of cytoplasm. Implicated in Alzheimer's disease. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: cyclin-dependent kinase 5 activator 1-like

GO:

id name namespace
GO:0071902 positive regulation of protein serine/threonine kinase activity biological_process
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0016533 protein kinase 5 complex cellular_component
GO:0016301 kinase activity molecular_function

KEGG:

id description
K11716 CDK5R1; cyclin-dependent kinase 5 activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259175.3 True 4785 mRNA 0.43 2 3392308 3399142

Neighbor

gene id symbol gene type direction distance location
LOC103043460 LOC108426414,LOC108274136,LOC107754112,LOC107743783,LOC107566616,LOC107691214 coding upstream 49618 3322964 ~ 3342690 (+)
uts2r uts2r,LOC108426413,LOC108273405,LOC107754100,LOC107689263,LOC107552777 coding upstream 210129 3126382 ~ 3182179 (+)
cacna1g cacna1g coding upstream 322477 2730484 ~ 3069831 (+)
spata20 spata20 coding upstream 694272 2639255 ~ 2698036 (+)
etv4 etv4,LOC107706904 coding upstream 772937 2574538 ~ 2619371 (+)
tbx21 tbx21 coding downstream 329274 3728416 ~ 3746114 (+)
pnpo pnpo coding downstream 378600 3777742 ~ 3781778 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 394733 3793875 ~ 3801538 (+)
nfe2l1 nfe2l1,nfe2l1b,LOC107565927,LOC107563780,LOC107743763,LOC107677875 coding downstream 413954 3813096 ~ 3820968 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding downstream 432242 3831384 ~ 3836581 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding upstream 1731 3382988 ~ 3390577 (+)
G34073 NA non-coding upstream 72386 3319714 ~ 3319922 (+)
G33987 NA non-coding upstream 173966 3217004 ~ 3218342 (+)
G33959 NA non-coding upstream 630793 2760908 ~ 2761515 (+)
G33950 dhx8,LOC107706906 non-coding upstream 757286 2628670 ~ 2635022 (+)
G34105 NA non-coding downstream 146311 3545453 ~ 3557491 (+)
G34177 NA non-coding downstream 403837 3802979 ~ 3804577 (+)
LOC103040174 NA non-coding downstream 454303 3853445 ~ 3861449 (+)
G34188 LOC108426464 non-coding downstream 465226 3864368 ~ 3868495 (+)
LOC111192351 NA non-coding downstream 604341 4003483 ~ 4008413 (+)
amz2 amz2 other upstream 1335345 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2004289 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2399790 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2406927 983167 ~ 985381 (+)
LOC111192417 NA other upstream 2967837 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 164888 3564030 ~ 3659132 (+)
G34309 NA other downstream 771909 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 1483414 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 2293380 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2847504 6246646 ~ 6258050 (+)

Expression


Co-expression Network