LOC103047433 (psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354)


Basic Information

Item Value
gene id LOC103047433
gene name psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3382775 ~ 3390578 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259176.3
CGCGGGTGGTTGTGGGTCTGTAGGTTTGAATAGGGAAGATGGCAGCCGCGGCAGTGGTGGAGTTTCAGAGAGCTCAATCTCTCATCAGTACGGACCGGGACGCCTCTATCGATATTCTACACTCGATAGTGAGGCGGGATGTTCAGCAGGATGATGAAGAAGCGGTGCGCGTCAAAGAACAGAGCATCCTGGAACTTGGCACACTGTTGGCCAAGACGGGGCAAGCAGCAGAGCTTGGAGGGCTCCTGAAGTTTGTCAGGCCTTTCCTGATCTCCATAAGCAAGGCCAAGGCAGCCCGACTGGTGCGTTCTCTGCTGGATCTCTTTTTGGATATGGAAGCAGCCACGGGCCAGGAGGTAGAGCTGTGTCTGGAGTGCATTGAGTGGGCCAAAGCTGAGAAGAGGACGTTTCTCAGACAGGCATTGGAGgcTCGTTTGATCTCACTGTATTTTGACACCAAGAGGTTCCAGGAGGCCTTGCAGTTGGGTTCCCAGTTACTGCAAGAGTTGAAGAAGATGGATGACAAAGCTTTACTTGTGGAGGTCCAACTGCTTGAGAGTAAAACCTATCATGCACTCAGCAACTTGCCTAAGGCCAGGGCTGCCCTTACCTCTGCCAGGACCACAGCCAATGCCATCTACTGTCCTCCCAAGCTTCAGGCAGCATTGGACATGCAGTCAGGCATTATCCATGCAGCTGAAGAGAAGGACTGGAAGACAGCCTATTCTTACTTCTTTGAGGCATTTGAGGGCTATGACTCCATTGACAGCCCCAGGGCCATCACTGCCCTGAAATACATGCTCCTCTGCAAGATCATGCTCAACTTGCCTGAAGAAGTACAAGCCTTGATCAGTGGCAAACTGGCCTTACGATATGCTGGGAGACAGACGGATGCACTGAAGTGTGTAGCACAAGCAAGCAAGAACAGGTCATTAGCAGACTTCGAAAAGGCGCTGACTGAGTACACAAAAGAACTGAGGGATGACCCAATCATCAACACACACTTGGCAAAGCTCTATGACAACCTGCTGGAGCAGAACCTAATCCGTGTCATTGAGCCCTTCTCTAGAGTACAGATAACCCACATATCAGGGCTCATCAAACTGTCAAAGGGTGATGTTGAGAGAAAATTGTCACAAATGATCCTGGACAAGAAGTTCCATGGCATTCTTGACCAAGGTGAGGGAGTCCTGATCATCTTTGAGGAGCCTCCTGTAGACAAGACTTACGAGGCGGCTCTCGAAACCATACAGAACATGAGCAAAGTTGTGGATTCACTGTACAACAAAGCTAAGAAGTTGACATAGAACAAACGCAAAAGGATTTTGCTCTGCAGAGTggatgtgtgtgcgtgtgtgtgagtgtatgtctGCATGCGTGTGTGGCCAACATGTGGAGCCTTTTTTGTCAAGGCGAGAAGGGACAATAGAGTAAGACTCACAAAATTACAACGGATTCACTTCGCTCCCCAACCGAGAGTTTTTAACTCCTCATTCAATGGACAATTTCatccttctcttctcctctttatTTTTGATCTTTCATTTCTCCCCCCCTCAGTGTATCTGTCATCGGCCAGTATGGCCATCAGGGAATATTGTACAACTACAATAAAATCTTAAAGTCATCACATAGAAATCTATAACTCTTTTTACAGATCGAGTAACAACCTCCAGTGGTGCAATACTGCTTCAACTCCCTGTTCTTTTGGGGTCGCGAGGAAATGTGGATAACTGTGATTGTCTCCATTAGTTCTAGTCTCATGGAAGCACATTTATTCTGTCTGCAGTAAAAGTAGGATGTGCCAGATCCAGGCATGTTAAGGCTATTCAAATGGTTCTGTAGCGAGCACTGTTGCCAGCAATCAGACCAATCATGGTTATTTTTCCAATGTTTTTTAAGTTCAAATGATTTGAGTTTGATGTACAGTTACTCGGTATACTCTTGATTATACACATTGCAGTTCATTGTCTTTAACTCTAAATATGTTTGTTGTATTAAACTTCCCTTCTTCTTTCAAGGTATTCATTAATAACTTcttttttaactattaaaatgCTAATGTTTAACTGCAGTATGGataaatttaatttctttagTTGGACTATATATGCATTTTAGATTTCTAGCAAAGAACACAAGTTGTAAATTATAGCCGgtgtggatttaaaaaaaatttttgtcAATCATCTTTTTCATGTAATCAAAAATACAGATTCCTTTTTCTGA

Function

symbol description
psmd11 Predicted to enable structural molecule activity. Involved in proteasome assembly; stem cell differentiation; and ubiquitin-dependent protein catabolic process. Located in membrane and nucleus. Part of proteasome accessory complex.

NR:

description
26S proteasome non-ATPase regulatory subunit 11B

GO:

id name namespace
GO:0048863 stem cell differentiation biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0043248 proteasome assembly biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259176.3 True 2229 mRNA 0.45 13 3382775 3390578

Neighbor

gene id symbol gene type direction distance location
ogfod3 ogfod3,LOC106959269 coding downstream 2176 3340612 ~ 3380599 (-)
LOC111192418 NA coding downstream 159777 3221347 ~ 3222998 (-)
dhx8 dhx8,LOC107706906 coding downstream 745024 2624938 ~ 2637751 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding downstream 1099791 2276757 ~ 2282984 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 1248732 2131018 ~ 2134043 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding upstream 13369 3403947 ~ 3532389 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding upstream 154855 3545433 ~ 3555219 (-)
LOC103044690 osbpl7 coding upstream 358593 3749171 ~ 3770492 (-)
mrpl10 NA coding upstream 380061 3770639 ~ 3776185 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding upstream 412334 3802912 ~ 3807018 (-)
LOC111192350 NA non-coding downstream 193339 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 297369 3060369 ~ 3085406 (-)
G33944 etv4,LOC107743788 non-coding downstream 779586 2574387 ~ 2603189 (-)
G33939 NA non-coding downstream 838664 2515287 ~ 2544111 (-)
G33910 NA non-coding downstream 1015035 2362350 ~ 2367740 (-)
G34101 NA non-coding upstream 1051 3391629 ~ 3399113 (-)
G34159 NA non-coding upstream 338064 3728642 ~ 3728960 (-)
G34166 pnpo non-coding upstream 387322 3777900 ~ 3781741 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 449425 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 490004 3880582 ~ 3883412 (-)
G34046 NA other downstream 188398 3181168 ~ 3194377 (-)
G33904 NA other downstream 1073446 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1186680 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1205716 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 1340472 2022071 ~ 2042303 (-)
prr15l prr15l other upstream 392547 3783125 ~ 3789192 (-)
G34214 NA other upstream 446043 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1581120 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1865041 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2513010 5903588 ~ 5928154 (-)

Expression


Co-expression Network