ogfod3 (ogfod3,LOC106959269)


Basic Information

Item Value
gene id ogfod3
gene name ogfod3,LOC106959269
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3340612 ~ 3380599 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259177.3
TGCGCTGCGCTGTGAGGCGGGCTGGTGTTCAGTgtggagtgaatgggagtgttGAACTGAGTTTTACAGGCTGCTGGTGTTAGTATGGCTGTGCAGAGGCGAGGAAACGTTAAAAGCCCAGAGTCTAGCGCTATTGAGAAAAAGATTAAAagGGCTAATGCACAGAGGCAGGCCTTCACTTGGAGAAGCTACATCCCTCTCCTGCTCCTGCTGACTGTCCTCACTGCTGCATTGACATGGCTGTATTTGAGCCTGAGTGATGAATTCACTGAGACCCTGGTTTCAAGAGGGGAGGTCCTGACAGAGCCCAGAATATTCCTGGTCCAGTGCTCTGAAGATTATGAAAACCACAAGCGCTTCCCAGGCTGTACGCCTACCAAATGTGGCCGAGCTGTTACAGACAGTGTGGTGACCAAAGAGGAGGCCCAGATCCTAAAGAGGTTAGCAGAGAGAGGATTAGCACTTGGAGGGTCAGATGGTGGCGCTTCCATCCTGGACCTTCACTCTGGAGCTTTGTCTATGGGGAAAAAATTTGTCAATATTTACAGGTATTTTAGTAACCAAATAAGTGAAGTCTTTACTGAGGAAGATTTCAAACTTTATAGGGATGTGCGTGGTCGTATTCAGAAGGTGATTGCTGAAACGTTTGGACTGGACTCCTCTCAGATGTATCTCACCAAGCCGACATTCTTCTCCCGCATCAACAGCACCGGCGCCAAAACCACTCATGATGAGTACTGGCACCCACACATTGAcaaggtgACTTATGGGTCATTCGATTACACATCGTTACTCTACCTCACAGATTATGGTGTGGATTTTGGAGGGGGGCGGTTCGTCTTTATGGACTCAAACAGCAACCGAACAGTGGAACCTCGTGCAGGACGCGTGTCTTTCTTCTCCTCGGGCTCGGAGAATCTCCACCGCGTGGAGAAGGTTGTCTGGGGCACGCGGTATGCCATCACCGTGTCCTTCACGTGTGACCCCGATCACGGGATTGCTGACCCCACTTTGCCGTAGGATCCCTCTTCAGATTTGCACCTTGCTGGAGCCCTGgagtgaaaaaacaaaaaaaaaaaacacaaaaaatatgtgAGGAATATGTACTGAAGCACAGATTCCTGATTTATTTGCAGCTTTTGAGCAATGGCTTTCTTGATTTGCTTGTGGAATTAGCATCATtgcaatgttaataataataattcatattacAAGTAATGTACatgttatttaatttcttttttaattaagacATGATGTTTTTACTGGGAAAAGGGACTTTTTATTGAGAAAAATTACTTTcacactttttacacaagtttgtCTTGTGTAGATTTTCTGACTGCATGGTTTTCTTCTGTCTGAttgttcctttttcttttttggtccTATTTGTCACAGCTGGATCAGCTGTAACAGTTAAATCAGACAGACTGTGCAAGTGGGTATTCCCAACAGGTGGTATGAAAGAAATTGCTTACAAAAAGGCAGCTAGGTATCCTACTGATGCAGCTTTTCAGGAGCATATGCATGAGCCTATTGCtgaatatgtttcttttttactctGCAATATCTTCTTATAAAAGTAACAATGCGAGGCTCAACAAAACGTTCGCAGTATGAATTCCAGATGCCTAATGAGACTTAATGAGACATACAAGTCACTTACTCAATAGTCTGAAAGAACTGAAAAAACCCTCACTTAAAAACTAACTTTTTGCTAGAGATGTACAAATAAATTCAGCTAGTGGGTTAGCTTaaccatttccaaagctttccATCAGGAAATACAGCATTTAGTGTTTACTGGTACATTCCAAGATTGTCACAGAGACGTCAGCAGACGAATATcagtaatttactgtatttgtgtttattaattctAACATTAATTCTAATGCTAAGTTGTGTTTGTATAGGTAAAAACAGCATGCAGTTTGTTTTAAGCAATATCCATGACTCCCTAAGACATTTGGCACtatactgtacaatatattacaaaacTTTAAACGCAGTCTGAAAGAAGGCAAGTGATACATTTTATTGCACGTTCTTGGTCATGCTGTTTATACTGGTCCATGTTTGGGTGACAATCATGATGGTTGTGTTGGTTGTTTGGCTTTCTCAGGTTGATCATGTTTGAAGACCagctaaaataaattcaaatgtGAACAAAAACACTCTAtgctggtcatgttggtcatgctggacGACCAGTTTTGTTAAGTATAGTTAAGCTTGGTCATTCTGGTGGTCTAGTTTGGTCAGTTTGATGATGCTTATAGACCAGATAAACCATCAAATGAAAACATTCCCTCTACTGGGCTGAGTAAACTAGCTTAATCAGCTTTAACTGACTGTTGGCTGTATTTTGCCCACCTAGACTCATTGATTGGCTGTTTGCATCTTATTTTCTTGATTTCTCTTCGTAAAtaccttttttaattttcttggGTAaagaaatatactttttttcagctttttcccCACCCCAATTTTCTCTGATAAATATAACTTTACTTCATCCGGACCCTTTTTGTATTCATCAGGGTTTGCACTGATTAAAGGAATTGCTGTCAGTGCAAAAAGATTTAACCTTTAACACGATCAAGcaacaccttttttaaaaagGGAATAGAGATTAAATAGGTCTCTAATGTGTCAGATTGGCAAAATTTGAGTTTGTCGTTAATATGATCCAGAAAACTGCAGATCAGTTGAACTGTGGAATCTGGCACTGCAGCAGGGATTATACAGAAGAGAGGAGCTTTACATTTCTCACACTGTGTGGCCTTCTTTCCAAAGTGTCATCTGCTATACTGGGAAATCTGAGCTGTCTGCTGTTCCAGTAGCATCAGCGATGTCTCACTGCAGTGTACCCTGTGTTGCTTATGAAGCGACCATGAGCACCAAATGaactgttctgctgtaaaagtACATGAATGCTAAATATTCTGATTGAGGCTTTTTACTGTTACACCATGCAGAAGAATGTGAATTCATTTGCCGCTGTTTTCTAAATGTGCGCATGATTATCTTAAATTAATTCTGCTTATTCAAAGAATGACTGAAtgatttttgtaataaatgtcaTTTAATGATCTCA

Function

symbol description
ogfod3 Predicted to enable several functions, including L-ascorbic acid binding activity; dioxygenase activity; and iron ion binding activity. Located in membrane.

NR:

description
PREDICTED: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3 isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259177.3 True 3106 mRNA 0.41 9 3340612 3380599

Neighbor

gene id symbol gene type direction distance location
LOC111192418 NA coding downstream 117614 3221347 ~ 3222998 (-)
dhx8 dhx8,LOC107706906 coding downstream 702861 2624938 ~ 2637751 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding downstream 1057628 2276757 ~ 2282984 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 1206569 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 1220229 2117540 ~ 2120383 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 2176 3382775 ~ 3390578 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding upstream 23348 3403947 ~ 3532389 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding upstream 164834 3545433 ~ 3555219 (-)
LOC103044690 osbpl7 coding upstream 368572 3749171 ~ 3770492 (-)
mrpl10 NA coding upstream 390040 3770639 ~ 3776185 (-)
LOC111192350 NA non-coding downstream 151176 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 255206 3060369 ~ 3085406 (-)
G33944 etv4,LOC107743788 non-coding downstream 737423 2574387 ~ 2603189 (-)
G33939 NA non-coding downstream 796501 2515287 ~ 2544111 (-)
G33910 NA non-coding downstream 972872 2362350 ~ 2367740 (-)
G34101 NA non-coding upstream 11030 3391629 ~ 3399113 (-)
G34159 NA non-coding upstream 348043 3728642 ~ 3728960 (-)
G34166 pnpo non-coding upstream 397301 3777900 ~ 3781741 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 459404 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 499983 3880582 ~ 3883412 (-)
G34046 NA other downstream 146235 3181168 ~ 3194377 (-)
G33904 NA other downstream 1031283 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1144517 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1163553 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 1298309 2022071 ~ 2042303 (-)
prr15l prr15l other upstream 402526 3783125 ~ 3789192 (-)
G34214 NA other upstream 456022 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1591099 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1875020 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2522989 5903588 ~ 5928154 (-)

Expression


Co-expression Network