LOC103021465 (LOC108426423,LOC108273974,LOC107754115)


Basic Information

Item Value
gene id LOC103021465
gene name LOC108426423,LOC108273974,LOC107754115
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4148188 ~ 4161856 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259178.3
aagaacaagaggAGCAAAGAGAATtcaggaaaacagagagaagaagaagaaagacaaAGCATCCACACAAGGGCACACTTGTGAAGAAcaaaacagagcaaaaaaaagagagagaaagggagagagagagagactgacaaACATCCAGAAGTAAGGAGGGGCAAGACCGGCAGTAAGTATGCAGCATTTAAGATACACATATTTACTCTGCATTAAACAGAGCACACGCTGGGCTTCCCTCACTTTCTGAAGACCACCAACAGGAGAAAGATCCACtgaggaggaaaaaagaaagtcGCCTGCAGGAGAACGAAACAGCCACCTGAGCTGAGAAGCACTTAGAGAAGCCTACCTGCTGCTCCGACCGATAACCAGCCATCAAGATGCTGCAGCAGATTCTCCAAGATATGTACATCGAGCCTGATCTGCTGGGAGAGCTGAACGAGGAGCAGAAGCAGATTCTGTTCTACAAGATCCGTGAGGAACAGGTGCGCCGCTGGAACGAGAGGGAGAGCAGAGATCCCATCCCAAACATTCGCAGGAGAAGCGGTCAGCGAGGGATCCGTTGGCTCCTGGGCTCAGATGCTgaggtgtgggtgtgggtgatGGGGGAGGCCCCCGGAGACAAGCCATATGAGGAGATTGTGGAGGAGCTGATGGAGGAGAGAGCCAGGAAGCAGGCCCAGAGAGAAGCTCAGGAGCTCCGGCGTGTGAAGGAAGCAGAGATTGAAAAGAAGTTCCGAGATGCCATGGCGAAGGAGAAGGCTCGCTTTGTGGCAGAGAAATGGAGGGAGGAGACAGATGACAGAAAGGCAGCCAAgcaagaggaggaagaggaggatcgCATACGAGAGGAGCTGAAGAAATGTGAGGAAGAAGAGcggcagagaggagaggaggaaatCCGGCAAACGGAAGAGAGGCGAGCGAAGGAGCTGTACATCTCTCTGAAGCAGGAGGAGAAGAGGGGCGACCGGGATGACAAAGAGTGGCAGGAACAATTGCAGCGCTCCAAAGCGGCCGACGAGGAGATGAAGTGCAAAGCTCGGCGTGCCAGAGATGAGTACAAACGCCAGTCCCTGAGAGCGATTGAGAAGGGCCTGGTGGCCGGCCTCAGCGGACTCTTCCAGAAGACCCATCTGAATGGCTCGAGTCAGAACCGGCGCCACAGCGGCGTCATCGAGCAGTCTGCCGCTCTGACTGAGGCCAGCCAATCGCCGGCCTCTACAGGAAGTGCAGCCGCTCCAGCCCATAACCGCCGCAGACAGAACCGCAGATACAGCAGCCCTGTTACACAGTCCATAACGGAGGGTCCAGTGTGGATTCGTCCAGCCAGGCCAACCAGTCGTGAATCCATCCTCCGCTGGTTTAAGGAGGAGCAGAGGCCCAGAAGGGCTGGATACGAGCGGATTAGCAACACTATCGCTCCCTGGTTCCATGGTATAATTTCACGGCAGGAATCAGAGGCTCTGCTGATGAACGCGTCAGAAGGCTCTTTCCTTGtaagagtgagcgagagaatTTGGGGGTACACCCTGTCCTACCGCACAGCCTCCGGCTTCAAACATTTCCTCATCGACGCCTCAGGCGATTACTACAGCTTCCTGGGGGTGGACCAGAACCGCCATGCCACGCTAGCTGACCTCATCGACTTCCACAAGGAGGAAGTGATAACCACATCTGGAGGAGAGCTGCTGCAGGAATCGTGCAGGCTGAAGGGCTCCAGTCCAGATTATGGGGGGCTTTTTCAGTGAGGCCTCTCC

Function

NR:

description
PREDICTED: SH2 domain-containing protein 4B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259178.3 True 1763 mRNA 0.55 9 4148188 4161856

Neighbor

gene id symbol gene type direction distance location
LOC103036928 NA coding downstream 50233 4088103 ~ 4097955 (-)
LOC103038619 NA coding downstream 254823 3884014 ~ 3893365 (-)
LOC103039858 LOC108426464 coding downstream 278012 3861574 ~ 3870176 (-)
ccdc189 NA coding downstream 308631 3836623 ~ 3839557 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding downstream 318825 3823918 ~ 3829363 (-)
LOC103044368 LOC108426474 coding upstream 57611 4219467 ~ 4440792 (-)
atrnl1 atrnl1,atrnl1b,LOC107755548,LOC107689951,LOC107708169 coding upstream 430178 4592034 ~ 4703993 (-)
LOC103022618 cyth1,cyth1b,LOC103022618,LOC108274176,LOC108426518,LOC104925066,LOC107755486,LOC107690912,LOC107684080,LOC107581598 coding upstream 549244 4711100 ~ 4791734 (-)
LOC111192353 LOC106633734 coding upstream 599730 4761586 ~ 4763069 (-)
sfxn2 sfxn2,LOC107722238,LOC107581595,LOC107755483 coding upstream 658066 4819922 ~ 4847408 (-)
G34300 NA non-coding downstream 12901 4133286 ~ 4135287 (-)
G34298 bms1,LOC106605356,LOC107566656,LOC103354837,LOC108228954 non-coding downstream 23367 4112381 ~ 4124821 (-)
G34265 LOC108426470 non-coding downstream 144386 4002924 ~ 4003802 (-)
G34240 NA non-coding downstream 222498 3925481 ~ 3925690 (-)
G34238 NA non-coding downstream 223519 3924442 ~ 3924669 (-)
G34311 NA non-coding upstream 9197 4171053 ~ 4177653 (-)
G34342 NA non-coding upstream 300021 4461877 ~ 4509252 (-)
G34381 NA non-coding upstream 424589 4586445 ~ 4586858 (-)
G34385 NA non-coding upstream 465826 4627682 ~ 4628175 (-)
G34429 NA non-coding upstream 611957 4773813 ~ 4774992 (-)
G34214 NA other downstream 264719 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 358996 3783125 ~ 3789192 (-)
G34046 NA other downstream 953811 3181168 ~ 3194377 (-)
G33904 NA other downstream 1838859 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1952093 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 809842 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1093763 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 1741732 5903588 ~ 5928154 (-)
G34770 NA other upstream 1773979 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 1887145 6049001 ~ 6147311 (-)

Expression


Co-expression Network