LOC103022011 (gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958)


Basic Information

Item Value
gene id LOC103022011
gene name gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4526945 ~ 4570849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259179.3
CCAGCTGCTGTTCAGTCCCTCAGAGAGTCCGGCAGGGACAGCTCAGACTCACAGAGCGCGCGCGGGGAGCTGCAGTGAGGGAGGATTACACTCTCCTGGACTGGCTTGGATGTGCGTGTGAATGAGAGGAGTGATTGAGTTATCAGAAGAGGGAAAAGGCTGTGACTGCTTCACTCTGACAGTCACCCCGACACTCACATCTCTGACACACACGTGAGGAATGAGTTCACCTGCTGGGAGACGACCCAGGACCATGAACACGGAGTGAGCGTGGAGGCGCGCAAGGGATGGCCATCATTACGCACGCGCTCCTGGCTGCGTTACTCCTGCAGTTTTGCTCTTGTTAAAAGCTGAGGgcgcgtgtttgtgtgtgctctctctgtttctcggTATAAAGCAGCGGGTCAGAGGTGATCAGCAGTGCAGAGCAGCGGCAGCAGGTTGGGGGATGTACGGCTGCACCATGCTCGCTCCCGCGGTCCGGTCCGGAGCGCATTCAGCGCGCAGTGGATTTATGGGGGAAACAGTCAAGCGTTGCGATTTCTAAAGTAAAGGGTTTTTCATACAGTTCATAAAAGGGATCAGGACAAAGTCACCATGCTCTTCTTCACTTTCTGGACCTTCTTTCCTCTTCTGGACGTGGTGTCCTTTGCTGGGGCTCAAGAGTTGAGTCAGTCTCGTGTGCCTCGTCTGGACTGTGTGAGAGCTCATGAGCAGTGTCTAGCCAAATACGGCTGCAGCACCAAGTACCGCACCATGAGGCAGTGTGTGGCCGGCAGGGCGAGCaacatgagcatgctggccgaGCCTGAAGCACAGGATGAGTGCAGGAGTGCCATCGAGGCCATGAAACAGAGCCCTCTCTACAACTGCAAGTGCAGAAGAGGCatgaagaaggagaagaacTGCCTGCGCATCTTCTGGAGCATCTATCAGAGTCTGCAGGGCAATGATTTGCTGGAGGACTCTCCATATGAACCAGTGAACAGCCGTCTGTCTGACATATTCCGCCTGGCGCCCATCATATCAGGTGAAGCGGCATTTTCCAAGGACAACAACTGCCTGAACGCTGCCAAAGCCTGCAACCTGAACGACACGTGCAAGAAGTACCGCTCAGCCTACATCAACCCCTGCACCAGCAGGGTCTCCACCACCGAGGTGTGCAACAAGCGCAAGTGCCACAAGGCTCTGCGGCAGTTCTTCGACAAGGTGCCGGCCAAGCACAGCTACGGCATGCTCTTCTGCTCGTGTCCGTCTAGTGACCAATCGGCCTGCTCTGAACGCAGGCGCCAGACCATCGTACCGGCCTGCTCGTATGAGGACAAAGACAAACCCAACTGCCTCAACCTGCAAGAATCCTGCAAAACCAACTACATCTGCAGATCTCGCCTCGCTGACTTCTTCACCAATTGCCAGCCAGAGGCTCGTTCAATATCGGGCTGTCTGAAGGAGAGCTATGCGGACTGCCTGCTGGCTTACTCTGGTCTTATAGGCACAGTGATGACCCCGAACTACCTTCGCTCTCCCAGCATCAGTGTGTCTCCCTGGTGCgactgcagcagcagcggcaaCGGGAAGCCAGAATGTGACAAGTTCTCAGAATTCTTCACCAACAACCGCTGTCTCCgtaatGCTATCCAGGCCTTTGGTAATGGTACAGATGTTGGGGTGTGGCAGCCCCAGCCTCCGATACCACCCACTGCCCCCCAACCCAACAACCGGAACTCTAATGCGCTGGATGACCAGACACTCTCCAATGACCTGGACCCAAGCAATGACCATCTATACAGCTTCTGTGGAAGCCTTCAGGCTCAGAAACTGAAGGCAAATGCCACAATAGAAGTTCCGTGCATGGATCCCCCTCTAGCTGACCCCAGCAACTTCAATGCTATAGCAGGAAGCTCGACCGGCCACATCCACTCTGTGACCGTCCCTGTGCTGCtgctggccttgctctctgctCTCCAGCTACTGCCCCACAAGGCCCTGCTTTTGTAGCCCAACCCCAGTCTGGACTGCTCGTGTATCATACTCACCACTCTGTTGTATTTGATCTTCTTCTGCAAGTGATGCTGTATGAGGTGTTGATGTCTACATGTGCTAAAGCTGCTTTTTCTTTCTGACCGATGGAGGATCTGTTCTGATGGACAAAAGTAAAAATCAGAGAGTTACTGACACAGAAGCAAAAGGTCATCTGTGAACTTGATGAAAACTGGACTTGTGTAACAACCCCAGTGTGATCTACAGTTTTGGAGATAAAGTATTTCCATCTGCTGCCTGGATGAGAACTTTATTATTCCACAAGGGCTGTTGAGAAGGAGCTACAGAGAAAATCAAGGATCACTGAAAACAATGGGACCCTCCAGTTTTTGTTGAACAGGAAGAGACTCCAAAATGTAGACAGACTTTAATTTCCTCTTTCAGAGATATAAGAGAAAAGCTTGTAACATCTTGTGCTCAGCTGCAGTCAGAGTCGCATATTtcagaaaagcatctgccaaCTAATCCTGTCCACTGCCTCTGCCTCTTTTATGATGAGCAAGCATTGTCTCGAGCATTGTCTCTCCAATCTGCCTCTAGCATGGCTGATACATACAGAGCCAGAGGACACAAAGTGAGGACACACAGtgggagaaaaaacacagacagacagacagacaaagttGTTTTGAACCTTCAGAAATGACCCATTCATGTGCTGCATACAAATGTGCTCTTTTGTAGCAACTCTAGGACGAGTTTTACCGTCACTGTTAAAAGTATAATTTCCTTTTGGAACTTCTTGGGGTTCTTCTAATTGAAACTGTGGAGAAACACTTTaaggtgctttaaaaaaaaccttcaagAAAGTATAGGTTTCACAGTTTCAAGCAGAATAGAATCAAACTCTTTTAATGTCATCACATTAACACAGATGTACACAGGTGCTAGGTCACTGTAGTTAAAACCCACAATAACAAAACACAATAGgtacaaatagaaataagaaaccTACAATTTCACACATAACTTACACTATACAGACATAATTGCACTGTAgaaatgctataaaaaaaataatacatatacagaAGTATACACTGCCATCTAAATATAGACAACTGAATGCATGCGAATCCAAGTATTTGACAGGGTGTATGGGATAAAAGTGTTGGTGGGTGCAGTGTGTCTGTAAGTAGGTACCATGTTGAGTGCATAATGAGTTTATAAGGGATGGAGATGTAGTATAGATGTAGTAAGATGGATAAGAAGAGTTtaaggtgtgttttgggctaaACGTTcctggggaagaagctgtctctGAACTGACTGGTTCTGGTCTTTAAGCTTCTGTACTTCTCATTTGATATGAGAACAGGTAGTGGCTTGGTTGGGGGTGGTCCTTTATGGTCCTTGAAGAACCCCTAAAACTTCCTCAAGGAACTTATACTTCTACCAGTAAATGAATGTATATAATCAATGGAGGAGGTGACAAAATGATGAAGTGATGAAGCGATAAAGTTGCCTAATGTTAGTTTCTTGTGGAGGTGTTAAAATTTGCTGGGCTGCATGGTGTGTAAGTCTCTGTTAATGATAAGCTTAAGGTGTTTGTTGGATTTGATCATTTAGATTAGAGTTTCTCATTCTCATTCCCACCTTGCAGAGGTTACATGCCCCACTAATTACACTTTAGGTAATTAACTAAGCCTTTAGGAACATGTGAATGTTCTAGACTAAGGTGAATTAGATAGATCTTTAGTCTCCAGGACCAGAACCGAGCACCCCTGATTTAGACTTCTCTAATTTGTCACTTCACTATGTcatcatttatttgtattaaattgtgGAAATATAGTTATAATGTTGGCAAAAATGATGAGGCAgggctaaagaatgctgcactgacctgtggatgtgtgtgtgtagggccTCTTGTATTAAATGTGGACATGATTATATATAGttcacatgtgacactgtgggtAGAGTTGAATCAAATATTCAGCCTCCAGACAACTTCATAAATAGAATGCCTCATCGATCTGAAACCAACTATCAGGACTCATTTACAATCTAACTGCAATTCACATCTCCTTGCCATGAGGAAACTAGCCAATGTTCTATACCTTaaccacaagataacacctcacaacatatacaggttTGGATGTCCCCTGCAGGTAGCGCTGCATGATACACTTTTACCGACAGCTatcccataacttttggcatgccagtgcatgtttttttttttttttttttacattagcaTGGTGAGAAATGTGTTGCCATTACTACCCTGTGTCTGTTTTAGAAAACTCAGTTTTAGAAACTCAATTAAACATAGCAGTTCAAAATTTCCACCCATTAGCTTAAATAGGACTATTTCCAGCATTTTGGAAAGCTTGTCCACCCTTGCTACAAAAGAACACATTAGTGAGTGCAGTATAATTAGGTTAATTTGCTATTTTTATGGACTTCTGGTTCATTCACTGTGGGTCAAGTGGCATTTCCTGTTAAGCCAAGAATGTTCAGCATCAACTGCAGTTTTTTTGGGGAAAACAGCATTTTGACCACCTGCTTGTACAATACCAgcctaattttttttcttacaaacTTAGCACATTTATAGCCGTAATATTACCACTGCTGTGTACAATATCATCTGATGTGTTTTAACAGTGAACATGAGTGTTGAACAGTGTACAAAGGTTGATGATTCAATCTAGTGTACCTATATGTAAAATGTGATGTACAGTAAGTAAAACATggtttctctctcgctctcttttaaATGAGGTGCCCTGAAAGCATTCTAGCATTGTTGTGATACTGTTAACTGTAAAAgtaattaaatcaataaaaactcAAGAATTACAGGGctgtaagaaatgtaaagggGCTGAAGAATACATTAAACACGTCAGAAGTAA

Function

symbol description
gfra1b Predicted to enable signaling receptor activity. Acts upstream of or within enteric nervous system development. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in nervous system; presumptive enteric nervous system; pronephric duct; and vagal neural crest. Orthologous to human GFRA1 (GDNF family receptor alpha 1).
gfra1 Predicted to enable signaling receptor activity. Predicted to be involved in nervous system development and positive regulation of peptidyl-tyrosine phosphorylation. Located in extracellular exosome. Biomarker of Churg-Strauss syndrome and polyarteritis nodosa.

NR:

description
PREDICTED: GDNF family receptor alpha-1

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process

KEGG:

id description
K19895 GFRA; GDNF family receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259179.3 True 4913 mRNA 0.45 9 4526945 4570849

Neighbor

gene id symbol gene type direction distance location
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding upstream 393974 4108457 ~ 4132971 (+)
LOC103043774 NA coding upstream 421192 4103372 ~ 4105753 (+)
LOC103037237 adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791 coding upstream 456213 4039157 ~ 4070732 (+)
LOC103037557 gabrz,LOC108426470,LOC108273489,LOC107675029,LOC107754081,LOC107565977,LOC107677887,LOC107563789,LOC107743757 coding upstream 523680 3958779 ~ 4003265 (+)
LOC103038101 valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788 coding upstream 602714 3910571 ~ 3924231 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding downstream 228254 4799103 ~ 4819304 (+)
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding downstream 258189 4829038 ~ 4832548 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding downstream 360566 4931415 ~ 4937026 (+)
galk1 galk1 coding downstream 368150 4938999 ~ 4943449 (+)
llgl2 llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216 coding downstream 373021 4943870 ~ 4966430 (+)
G34288 NA non-coding upstream 388792 4137755 ~ 4138153 (+)
LOC111192351 NA non-coding upstream 518532 4003483 ~ 4008413 (+)
G34188 LOC108426464 non-coding upstream 658450 3864368 ~ 3868495 (+)
LOC103040174 NA non-coding upstream 665496 3853445 ~ 3861449 (+)
G34177 NA non-coding upstream 722368 3802979 ~ 3804577 (+)
G34345 NA non-coding downstream 12869 4583718 ~ 4583977 (+)
LOC111192352 NA non-coding downstream 134064 4704913 ~ 4708973 (+)
G34393 NA non-coding downstream 203037 4773886 ~ 4774852 (+)
G34394 NA non-coding downstream 204172 4775021 ~ 4775341 (+)
G34396 sfxn2 non-coding downstream 253494 4824343 ~ 4827906 (+)
G34309 NA other upstream 348862 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 867813 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2469982 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 3138926 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 3534427 992312 ~ 992518 (+)
LOC103025551 sema4g other downstream 311707 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1121673 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 1675797 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 1931296 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 2021758 6592607 ~ 6663607 (+)

Expression


Co-expression Network