LOC103024595 (arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386)


Basic Information

Item Value
gene id LOC103024595
gene name arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4829038 ~ 4832548 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259189.3
GCTCCCGGTTTTCACGTGACGCGATCCCGCGTCTTCCCGAGGCGACGTCATCGGTCCGCCTTAGAAACCCTGGAGAAGACACGGGAGCAAGATGGGTTTGCTGTCAATTCTGCGAAAGCTGAAAAGTACTCCGGACCAGGAGGTTCGTATTCTGCTTCTTGGTTTGGACAACGGTGGAAAAACCACTTTACTCAAACAACTGGCATCAGAAGATATTAGCCACATCACCCCAACACAGGGTTTCAATATCAAGAGTGTGCAGTCTCAGGGTTTTAAACTAAATGTGTGGGACATTGGTGGACAGCGTAAAATCAGGCCGTACTGGAGGAACTACTTTGAAAATACTGATCTTCTAATTTATGTCATCGATAGTGCAGATCGCAAGAGGTTTGAAGAAACAGGACAGGAGCTGGCGGAGTTATTAGATGAGGAAAAGCTCAGCGGGGTTCCAGTTCTTATCTTTGCAAATAAACAAGACCTGCTTACTGCAGCGCCTGCATCTGAAATTGCTGAGGGATTGAACCTGCACACCATTCGGGACAGAGTGTGGCAAATCCAGTCTTGTTCAGCTCTCACTGGAGAGGGCGTCCAGGATGGCATGAACTGGGTCTGTAAGAGTGTAAATGCGAAGAGGAAGTAGAGCTGCATATATTTCCACTGCAGTCCCTCCAGGAAAGGCAGTGTGTACCTCTGAATGTACAAACAATGCATCCATACAGCTCCGAAACACAAAAAATCTTTGGATAATTAAGACACAtcactgaggaaaaaaaattgcGTTTCACATTTGCCTCTCCCTTGAGGCCTGCTGTGCTCAAAGAAAATTTGCACAAGGACCTCAAGCCTATTTTTATACTCTAAACCCCCAGAATTGTtctttaataaacatgtttgccattataacattttatgatCAACAAATGTATCAGTGTGTCCATTAAAAAATTGTTAGAGTAATGGTTAGGCTTTTTTGAAGCAACAAATTCTGCCTTCATATTGTAGAATACATCATTCAAGGTTTTGCACTGAATGTCCAAATACAGAAATTGTGGAATCTGATACTGTGacatatttatgtttaaatttatAATCTACATATTCCATTCCTTTTTACCGAACCACAAGCCTTGCTTTATAGTAGGTTATGTTTGTGACTGATGTTTCTGTCTATGAATGACATGAAGTTCATGTTGCTCCATCTTTCAATGTAATATTTTTGACAatattgttctttttctgagtatatttttgtaacatttattaAGAGTGTAGAATGCTTTAATATTGCTTTCTGTGTTCCATAGAATAGCAGGAAAGGTTGTTGTGTCCAAATCCAGAATAAAGAATTATATGTAAACATCCGGGAAGTATGGGAAATGCATTTTATAATTTGCTGTAATCATGTGGAAGTAGGCAAAATATTTTCTGTAAACACCTGGAATGTTTGTTTCAGGTTGAATTATGGTGGCACATAGATTTGGAGTCTTACAGTTATTTTGTGTTTGAtttgagtctgtctgttgtatGACTGAAACATCACAGTAAATATTGGAAAACAACA

Function

symbol description
arl3 Enables GDP binding activity; GTP binding activity; and microtubule binding activity. Involved in several processes, including cilium assembly; protein localization to cilium; and small GTPase mediated signal transduction. Acts upstream of or within post-Golgi vesicle-mediated transport. Located in several cellular components, including microtubule cytoskeleton; midbody; and photoreceptor connecting cilium. Implicated in Joubert syndrome and retinitis pigmentosa 83.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 3-like isoform X1

GO:

id name namespace
GO:0000910 cytokinesis biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0060271 cilium assembly biological_process
GO:0005813 centrosome cellular_component
GO:0032391 photoreceptor connecting cilium cellular_component
GO:0030496 midbody cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K07944 ARL3; ADP-ribosylation factor-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259189.3 True 1561 mRNA 0.40 6 4829038 4832548

Neighbor

gene id symbol gene type direction distance location
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding upstream 9734 4799103 ~ 4819304 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding upstream 258189 4526945 ~ 4570849 (+)
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding upstream 696067 4108457 ~ 4132971 (+)
LOC103043774 NA coding upstream 723285 4103372 ~ 4105753 (+)
LOC103037237 adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791 coding upstream 758306 4039157 ~ 4070732 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding downstream 98867 4931415 ~ 4937026 (+)
galk1 galk1 coding downstream 106451 4938999 ~ 4943449 (+)
llgl2 llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216 coding downstream 111322 4943870 ~ 4966430 (+)
chac2 chac2,LOC107749368,LOC107686371 coding downstream 135026 4967574 ~ 4971335 (+)
thbs2 thbs2b,LOC108426506,LOC108274281,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836 coding downstream 198259 5030807 ~ 5053505 (+)
G34396 sfxn2 non-coding upstream 1132 4824343 ~ 4827906 (+)
G34394 NA non-coding upstream 53697 4775021 ~ 4775341 (+)
G34393 NA non-coding upstream 54186 4773886 ~ 4774852 (+)
LOC111192352 NA non-coding upstream 120065 4704913 ~ 4708973 (+)
G34345 NA non-coding upstream 245061 4583718 ~ 4583977 (+)
G34410 mfsd13a non-coding downstream 37816 4870364 ~ 4871420 (+)
G34409 mfsd13a,LOC107755491,LOC107565800,LOC107690908 non-coding downstream 42590 4875138 ~ 4875554 (+)
G34485 NA non-coding downstream 139237 4971785 ~ 4973087 (+)
G34489 NA non-coding downstream 146199 4978747 ~ 4979412 (+)
G34500 NA non-coding downstream 221815 5054363 ~ 5056352 (+)
G34309 NA other upstream 650955 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 1169906 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2772075 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 3441019 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 3836520 992312 ~ 992518 (+)
LOC103025551 sema4g other downstream 50008 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 859974 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 1414098 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 1669597 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 1760059 6592607 ~ 6663607 (+)

Expression


Co-expression Network