mfsd13a (mfsd13a,LOC107565800,LOC107581593,LOC107684076,LOC107690908,LOC107755491)


Basic Information

Item Value
gene id mfsd13a
gene name mfsd13a,LOC107565800,LOC107581593,LOC107684076,LOC107690908,LOC107755491
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4870049 ~ 4878759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259191.3
GAGGAAtaagagaaggaggaggggaTGAAGGGATGAGGAGTAAGAGGAGGTGTTTCTAGTAGTGTGGGATCTAATGATGACGCCATGCGTGTTTCGCCCACACATGACAGGATTTACGCGGCCGGCGGGGTTTTCCACCACTAGGCTCCAGCAGAAACACGGCTGAAAACACCGCTTTAGGGTCCTGTGGGTTATCATAAACGGATATTTACATTCCAGCGATCTCGGAGCCCGTAACCCAGCCGCTGTGCCCGCATGAATTCGTTTGTAGGATGATGACCAGACCGTACTTGGCTTATGGACTGAATGAAGCCCTGCTGGTGGAGGAAAAGCCGAAGGAAAGTGAGAGAACGTGAGAAGGATGGGAAAGAGAGTGTGGAGTTTTTACCTGGGTGTCTCCACAGCTGTGCTGTATGGCTCCCTGTCCCTGTTTGTCTCCATCCTTCATAATGTCTTTTTGCTTTATTATGTGGACACTTTTGTGTCTGTGTACAAGATCGACAAAGTCTCCTTCTGGGTTGGTGAGACTGTGTTTCTGATATGGAATAGCCTGAATGACCCCCTGTTTGGTTGGCTAAGTGACCGCTCCTTCCTTAGCTCTCCTCAGTCTGGATCTCAGATCTCCGCTCCAGAGGTGGTGCTAAAGCGGCTACAGTCTCTCTCCAGGAATGGGCCACTTTTTGCCCTTTCCTTCCTGGCTTTCTGGGTGGCTTGGGCCCATCCTGGTCTGCAGTTTATCCTCTGCCTGTGCCTTTACGACGGTTTCCTCACGCTGGTGGACCTGAACCATAATGCCCTGCTGGCTGACCTGGCCGTGTCTGCAAATGATCGCACACGCCTCAACTTCCACAGCTCCCTGTTCAGCGCACTGGGGTCCCTGTCTGTTTTCCTCTCCTACTCTTTTTGGGACAAGGAGGATTTTACATCTTTTAGATTCTTCTGCGTGACATTGGCTGCCCTGTCTATGGTGGGCTTTGCTGTGGTGTCTCGTCTGCTACGCCTTAGGTTCCAGAAGGAGGTTCAGTCACACACGAATGAAGAGGAATTACTCAAAGGACTGTGTGTTGGCCAAGCCCCTCTTGCACCAACAGAGAAGCCTGTCACACTTGGAGAGTATCTAAAGCAGCTTTCCCGCCACAGGAACTTTATGTGGTTTGTTTCAATGAACCTTGTACAGGTATTTCACTGCCACTTCAACAATAACTTTTTTCCTCTGTTCCTGGAACACCTCTTATCAGACCAAATCTCTGCATCCACTGGTTCATTTCTGCTGGGCATCTCTTACATAGCTCCCCATCTcaacaacctttattttctgACATTGTGTCGAAAACTGGGAGTCTACCAGGTTGTGCATTGGCTTTTTATATTGAAACTGGGCCTTAGTATAGCGATGCTGTTGGCAGGAGCAGACCATGTTTATCTTCTCTGCCTGTTTATTGCCAGtaaccGAGTGTTTACAGAGGGGACCTGTAAGCTGTTGAACTTGGTCATAACGGACCTGGTTGATGAAGACTTCGTTATCAACCGCCGACAGCATGCagcctcagcactgctatttgGCATGGTTGCCTTGGTAACAAAACCTGGCCAGACCTTTGCCCCCCTAATTGGCACCTGGCTACTGTGTGTGTACACAGgTTATGACATCTTTCAAAGAGACCCTATTAAGGATTCTGTGGCAGCTGTGGCTGTCTCAGATGCTGAGAGCCCTGTTCCGCTGCGTCAGGGCTGCTTTTACCTACTGGTGTTTGTGCCCATCACCTGTGCTCTGCTGCAGCTACTGGTCTGGTCACGTTTCACCCTCCACAGTCGCAGATTACAGAGCATCAAAGCCCAGAGACAGGGTGCCCACCATGGTCATCTCCTTGACGTGAAGGCCATCTGATACTGCCCACCCCATTCTTTACTGCCTCACACTGACTGTGATGGAGGATGGTGACTGTGACTCtctttaagagagagagagagtgtttagTGAAACCTGccttattttatatgaaaaagTGTCTGCATGTCTATATTTATAAACTGTATGGGACCAAATATGAACTGTTAAAACAATCACATGTTGTGGGACCAGATTGAAGAGTAGCATCTCTAAATTCACTTCGACTGCACTTTGTTTGTACAGTACAACACCCAAATATATTTTAGCCTCTGGATCGAACAGTGCATTACCTACCGagccaacttttttttttcctctgtggaAATCTGAGGCCTCTgccctgtgtgtttgtttttacagtgaGAGATTTTTTTCACAGAAGGCATGTTTTTCAGCTCAGTAGCATTCCAGTTTGAGATGATCTGCATGGGTTTTTGCAAAGGAGTCGAGAGTTGCTTGTTATCATGATCAAAATGCAACAGTCAGTTCGTTGCTGGTGATTTTTGTGGTACTGTAATTTTAGCAAATGTTTACTCTAACAATTTGTCGCTTATTTGCtctcataaaaaatatttttataccaaATATTTCAAACAGATTTGCTTTGAAAAGAAAAGTGATATAGGTTTGTGAACCTGATTGattgtttaaatacaaaaatgatcCAGATTTCTTGTTACTCAAATGAAACATGGAAGTTCTTTGTGCTAAgtcaaaatatttacatttctattTCTATGGCATTAAATCCCTTGTACAACTAGTAAATGTGATTACTCCTCTACATGAGTGGAAAACATTTTACTGAAATACTTTCTTTAGAGACTGATGTTTACTGTTTTGTCACCCGTGTTCTTACTATTTCCTATATTTATGTTCGAGAAGATGTTTTGTATGACTCAGGAAATTTgacatttacaaaataaacttCATTTAATATTA

Function

symbol description
mfsd13a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MFSD13A (major facilitator superfamily domain containing 13A).

NR:

description
transmembrane protein 180-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259191.3 True 2833 mRNA 0.45 9 4870049 4878759

Neighbor

gene id symbol gene type direction distance location
LOC103024913 trim8,trim8b,LOC107581594,LOC107684075,LOC107565801,LOC107755490 coding downstream 1920 4853007 ~ 4868129 (-)
sfxn2 sfxn2,LOC107722238,LOC107581595,LOC107755483 coding downstream 22641 4819922 ~ 4847408 (-)
LOC103022618 cyth1,cyth1b,LOC103022618,LOC108274176,LOC108426518,LOC104925066,LOC107755486,LOC107690912,LOC107684080,LOC107581598 coding downstream 78315 4711100 ~ 4791734 (-)
LOC111192353 LOC106633734 coding downstream 106980 4761586 ~ 4763069 (-)
atrnl1 atrnl1,atrnl1b,LOC107755548,LOC107689951,LOC107708169 coding downstream 166056 4592034 ~ 4703993 (-)
mrpl43 mrpl43,LOC107722220,LOC107581592,LOC107565786 coding upstream 48757 4927516 ~ 4930707 (-)
entpd1 NA coding upstream 221209 5099968 ~ 5125198 (-)
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding upstream 282149 5160908 ~ 5163466 (-)
LOC103030716 crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435 coding upstream 285191 5163950 ~ 5165625 (-)
vti1a vti1a,LOC107566351,LOC107702459 coding upstream 522169 5400928 ~ 5571634 (-)
G34439 arl3,LOC103024595,LOC105908595,LOC106589841,LOC107684078 non-coding downstream 37546 4829153 ~ 4832503 (-)
G34429 NA non-coding downstream 95057 4773813 ~ 4774992 (-)
G34385 NA non-coding downstream 241874 4627682 ~ 4628175 (-)
G34381 NA non-coding downstream 283191 4586445 ~ 4586858 (-)
G34342 NA non-coding downstream 360797 4461877 ~ 4509252 (-)
G34458 NA non-coding upstream 44489 4923248 ~ 4924233 (-)
G34464 NA non-coding upstream 48229 4926988 ~ 4927235 (-)
G34470 NA non-coding upstream 59332 4938091 ~ 4938394 (-)
G34473 galk1,LOC107755403 non-coding upstream 60248 4939007 ~ 4941347 (-)
G34475 llgl2,LOC107684069,LOC107722216 non-coding upstream 65141 4943900 ~ 4954001 (-)
G34214 NA other downstream 986580 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1080857 3783125 ~ 3789192 (-)
G34046 NA other downstream 1675672 3181168 ~ 3194377 (-)
G33904 NA other downstream 2560720 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 2673954 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 92939 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 376860 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 1024829 5903588 ~ 5928154 (-)
G34770 NA other upstream 1057076 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 1170242 6049001 ~ 6147311 (-)

Expression


Co-expression Network