mrpl43 (mrpl43,LOC107722220,LOC107581592,LOC107565786)


Basic Information

Item Value
gene id mrpl43
gene name mrpl43,LOC107722220,LOC107581592,LOC107565786
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4927516 ~ 4930707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259194.3
GGACCTGTAGGAGGCTCCTGTGCGCATGTGCTGATGGTCTGCTGTTTGTCCTttagccgctgctgctgctcacaGGGCGCTTATTCCCGCTGTGCTGAGATTACACTCCTGCAGTCCGGTGGAGGGGTTCTGAGTTGTGTATTTACTCTGTAATCAGGACAGGAGCCTCCTGAAGGTGGACATGACAGCTCGAGGTACTCCGAGTCGCTTTTTACAGAGTGTGCTTCATAACGGAGTGGGTCGGTATGTCTGCCAGCTGAAGCGCGTCTCTCTGATCTTCTCCAAGAACGCACAGAGCTCTTTAGGGGTCAGGGATTTCATTGAAGATGGTGTAGTTGACTTTGCTAAGAAGAACCCAGGAGTTGTGGTCTACGTCGATCCCCAGTCCTGCAGGATTCCAAAAGTAGTTGCTGAATATCTCAATGGTAACGTGAAGGAAGAGCTTGTCACCAATCAAACATCACAGCAGATTGCAGAACTGATTACTAAGATGGCCAACCAGTCAGGTCTGGATATCATCCGCATCCGAAAGCCCTTCCACACAAACTATCCCAGCATCCAGGGTCAGTGGCATCCCTTCACCAACCGGCCACCCAGCAAAGATCCAGTTGGACCACAGACCAAATGAGGACTCAacatagtattttatttatgctgcACTGGTTATTTGCCCACCTGTTGTATAAGAATAAAAGCTCTTTTTGTACTCCAACACAGTGAGAGAATTGAACAGTGCCTATGCCTGCATATATTATAGTGCTGTATTTCAGTTAAAGCAGCACTGACCACTGCAGGCCTCACTGGATATCAACTTTACTATTGTGGTGTTCCTGTTTTGTGATGGTTATGTAAAAAGCAGCGTgaccatttttgtattttgtatggAATAAAATCTAGACCATGAGGCTCAGATGGCTAAAAATAGCAAAGGTTCATTTGTGAGCTTGTATTGCACATATACTTTTTGTATTGGAAAATGTGTAGTTCAAAGTAGAAGAAATCATAACCATTAAAAAGTGACTgagtttattatcatta

Function

symbol description
mrpl43 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within mitochondrial translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL43 (mitochondrial ribosomal protein L43).

NR:

description
39S ribosomal protein L43, mitochondrial

GO: NA

KEGG:

id description
K17424 MRPL43; large subunit ribosomal protein L43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259194.3 True 1038 mRNA 0.45 3 4927516 4930707

Neighbor

gene id symbol gene type direction distance location
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107684076,LOC107690908,LOC107755491 coding downstream 48757 4870049 ~ 4878759 (-)
LOC103024913 trim8,trim8b,LOC107581594,LOC107684075,LOC107565801,LOC107755490 coding downstream 59387 4853007 ~ 4868129 (-)
sfxn2 sfxn2,LOC107722238,LOC107581595,LOC107755483 coding downstream 80108 4819922 ~ 4847408 (-)
LOC103022618 cyth1,cyth1b,LOC103022618,LOC108274176,LOC108426518,LOC104925066,LOC107755486,LOC107690912,LOC107684080,LOC107581598 coding downstream 135782 4711100 ~ 4791734 (-)
LOC111192353 LOC106633734 coding downstream 164447 4761586 ~ 4763069 (-)
entpd1 NA coding upstream 169261 5099968 ~ 5125198 (-)
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding upstream 230201 5160908 ~ 5163466 (-)
LOC103030716 crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435 coding upstream 233243 5163950 ~ 5165625 (-)
vti1a vti1a,LOC107566351,LOC107702459 coding upstream 470221 5400928 ~ 5571634 (-)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding upstream 648623 5579330 ~ 5596438 (-)
G34464 NA non-coding downstream 281 4926988 ~ 4927235 (-)
G34458 NA non-coding downstream 3283 4923248 ~ 4924233 (-)
G34422 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802,LOC107690949 non-coding downstream 44308 4799111 ~ 4883208 (-)
G34439 arl3,LOC103024595,LOC105908595,LOC106589841,LOC107684078 non-coding downstream 95013 4829153 ~ 4832503 (-)
G34429 NA non-coding downstream 152524 4773813 ~ 4774992 (-)
G34470 NA non-coding upstream 7384 4938091 ~ 4938394 (-)
G34473 galk1,LOC107755403 non-coding upstream 8300 4939007 ~ 4941347 (-)
G34475 llgl2,LOC107684069,LOC107722216 non-coding upstream 13193 4943900 ~ 4954001 (-)
G34477 llgl2,LOC107684069 non-coding upstream 28681 4959388 ~ 4960923 (-)
G34505 chac2,LOC107749368,LOC107686371 non-coding upstream 36894 4967601 ~ 4971094 (-)
G34214 NA other downstream 1044047 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1138324 3783125 ~ 3789192 (-)
G34046 NA other downstream 1733139 3181168 ~ 3194377 (-)
G33904 NA other downstream 2618187 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 2731421 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 40991 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 324912 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 972881 5903588 ~ 5928154 (-)
G34770 NA other upstream 1005128 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 1118294 6049001 ~ 6147311 (-)

Expression


Co-expression Network