galk1 (galk1)


Basic Information

Item Value
gene id galk1
gene name galk1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4938999 ~ 4943449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259196.3
tcagaatcactgAGATACAGGAAGTTTTCTCTTTCACTGATCAGCTCGTGTGCGTATAGTAGTGATCAGTGTTAATATCGCTGTGTGCGGATGGATGGAGAGGGGTCTGCGGCTGGTGTGGGGGCTCTGCTCGCCGCTGCTCTCCGTGTTTATGAGCGGAGTTATGGGGGAGAAGCGCAGGTGGCTGTGTGTGCTCCAGGGCGGGTGAACCTGATAGGAGAGCACACTGACTACAACCAGGGACTGGTTCTGCCAATGGCTTTGCCATTGGTTACAGTTATAGTGGGCAGCAGCACCTCTGGCCAAAGCTGCTCAGTTGAAACCATTACTGACTCCGCAGATGAGCCGAGGAGAGTGGACTTCGATCTGCCGACCGAGAGTTCACCCCTGACCAGAGGGAGGCCAGCCTGGGCCAACTATGTTAAAGGGGTGGTACAACACTATAGAGCACAACCCTTGCCTGCATTTAAAGCTGTGATCGCCAGCAGTGTTCCACTAGGGGGTGGATTGTCCAGCTCAGCGTCATTAGAAGTGGCAGTGTACACTTTCCTTCAGCAACTGTGTCCAGATGATGGGGATAAAGTGGCAAAGGCAGTAGCTTGTCAGCAGGCAGAGCACACCCATGCTGGAGTACCCTGTGGTATTATGGACCAGTTTGTCTCTGTGCTGGGAAAGGAGGGTCATGCATTGCTTATTGACTGCAGgTCTCTGGAGGCCACTCCTGTTCCTCTGGCTGATCCAGCTTTGGTCATCCTCATCACCAATTCCAACGTGAGGCACTCACTAACAGGAAGTGAGTATCCCAGCAGACGAAAACAGTGTGAGAATGCAGCAGCCATTTTGGGCAAGAGCAGTCTACGAGATGCAACAATGCAAAATCTGGAGGATGCCAAAGACCGAATGGACAGTGTGACATACCAGCGAGCACATCATGTGATTGAAGAGATTGCACGCACGGCACAGGCAGCTGATGCACTCAAACGGGGGGCTTATGCAGAGTTTGGAAGACTAATGGTGGAAAGTCACAATTCTCTCAGAGATCTTTATGAGGTCAGTTGTCCAGAGCTGGATGTACTGGTAGCTGCAGCAATGGAGGTTGATGGAGTCTTTGGAAGTCGGATGACAGGTGGAGGGTTTGGTGGATGTACTGTAACGCTGCTTCAGGCTGATGCCACTGAGAGGACCATAAAACATATACAGgaGAAATACAGCGGACGTCCCACCTTTTACATTACTACGCCATCAGAAGGAGCTCGGGTCCTCAGTGGGATGAAGAGTTAACACTTAAGTTAAAACTGTTCCTGCAGTGTGGTTTAGAACAGTGGATCTGATTTCTGCTGCATCTCTTTTTTCTACTTATGCACATAATCAGTGCCAAACTgataaaaatagcttttctcatcttttctgattttctgtcagaatgatgaaggaaaaaaatgtaaagatatTTTTCAGAATATAATGCAGATGTTCTAATATGAGTACAAAATGATTATCTGTTATAATCATTTACTAAGAGTCTTCTTACCACCCATGAGGTCATGTGCttgatattaaaaatgaatgagccTAGAATTACAATTGTTATTCCtgttaaattaatttgaaaCTAGAGAGGCATagcaaattatttacatttttttcatctaCAATTTTTGTCAGtagtgaaatttaaatatgaaaaagctTAACACTAATACAATTTTTATGATTCATAGCACTTTAGAATTCTTATATTTAGCATGTTGTTTATAATTTCTGACTAATATGCATGTTTTGCCCTTTTGCAGATAATTTTAACAGGATTGAGAATTGTACTATGattgtgattaaaatatttttatgtaataaattttaattaaaattttaaataaatcttaaataaaatgaaaaacaaaaaccaaTTGAAAGAGGCTGTTAAGGTATTAAATGATtgatgaataaaacaaaacactgtaaataagtaa

Function

symbol description
galk1 Predicted to enable galactokinase activity. Predicted to be involved in galactose metabolic process. Predicted to act upstream of or within carbohydrate phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in cataract and galactokinase deficiency. Orthologous to human GALK1 (galactokinase 1).

NR:

description
galactokinase isoform X2

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006012 galactose metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004335 galactokinase activity molecular_function

KEGG:

id description
K00849 galK; galactokinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259196.3 True 1970 mRNA 0.43 8 4938999 4943449

Neighbor

gene id symbol gene type direction distance location
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding upstream 1973 4931415 ~ 4937026 (+)
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding upstream 106451 4829038 ~ 4832548 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding upstream 119695 4799103 ~ 4819304 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding upstream 368150 4526945 ~ 4570849 (+)
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding upstream 806028 4108457 ~ 4132971 (+)
llgl2 llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216 coding downstream 421 4943870 ~ 4966430 (+)
chac2 chac2,LOC107749368,LOC107686371 coding downstream 24125 4967574 ~ 4971335 (+)
thbs2 thbs2b,LOC108426506,LOC108274281,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836 coding downstream 87358 5030807 ~ 5053505 (+)
LOC103029028 LOC108426433,LOC107581628 coding downstream 126604 5070053 ~ 5077912 (+)
LOC103044692 LOC108426432 coding downstream 143560 5087009 ~ 5099703 (+)
G34409 mfsd13a,LOC107755491,LOC107565800,LOC107690908 non-coding upstream 63445 4875138 ~ 4875554 (+)
G34410 mfsd13a non-coding upstream 67579 4870364 ~ 4871420 (+)
G34396 sfxn2 non-coding upstream 111093 4824343 ~ 4827906 (+)
G34394 NA non-coding upstream 163658 4775021 ~ 4775341 (+)
G34393 NA non-coding upstream 164147 4773886 ~ 4774852 (+)
G34485 NA non-coding downstream 28336 4971785 ~ 4973087 (+)
G34489 NA non-coding downstream 35298 4978747 ~ 4979412 (+)
G34500 NA non-coding downstream 110914 5054363 ~ 5056352 (+)
G34532 NA non-coding downstream 164361 5107810 ~ 5125290 (+)
G34534 NA non-coding downstream 191950 5135399 ~ 5135654 (+)
LOC103025551 sema4g other upstream 14233 4882556 ~ 4924766 (+)
G34309 NA other upstream 760916 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 1279867 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2882036 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 3550980 1369173 ~ 1388019 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 749073 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 1303197 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 1558696 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 1649158 6592607 ~ 6663607 (+)
G34931 NA other downstream 1787505 6730954 ~ 6731424 (+)

Expression


Co-expression Network