llgl2 (llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216)


Basic Information

Item Value
gene id llgl2
gene name llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4943870 ~ 4966430 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259197.3
GCCTGAGCTGCAGTCAAGAGATCCGTAGCTGCGCTGGCTGGAGGTAAAAGTCCTCCACTCTCAGCGGGCCTGGGGCCGCAGGAAACGGCGAGGCTGCAGTGGGGATCTGGAAGCTGAGAGAAACTGTATGTGTCTGCGTTAACTTTaggttttatatgtgtgttactTTGACCTAAACGTACGGAGTCGGCGGTTTTCCCcctcaaagaaaagaaaagtagtCCTAGGAGTGTGGCCCAACATCCGTAAACAGTGAGGAGAGCCGCTGGGACAACAGCGTCGCCCCGGATCAGAAAGGTGACAGAAGTGCAGAGGGCAGCGAGAGGCCCTTGATTGTCCCGGGAGAATGAAGAGATTCCGGCGACATGGGCATGACACTCAGAGGGACAAACTCAAGCAGGAGCTCTACCAGTTCAATAAGACTGTAGAGCATGGCTTCCCCCACCAACCGAGTGCTCTAGGCTTCAGCCCTAGTCTGGAGCTCCTGGCCATTGGTACCAGATCTGGAGCCATCAAACTCTATGGAGCTCCAGGGGTTGAGTTTATGGGACTGCATGATGAGAATGCTGCAGTCACACAGGTGCACTTTCTCCCACGACAGGTTGAGCTTGTGACTTTATTGGATGACAATAGTCTGCACATGTGGACACTTCGAGCTCATAAAGGTGTATCAGAGCTGTTGGAGATTGGACGCTTTACGCTCACCGGTCCTCCTGGTGCCATTCCTAGCGTGACGCGAGTGACTGCCGTCCTGGCCCATTCTTCAGGTGAGCTGCTTCTGCTGGGCACTGAAGGTGGCCATGTGTTCGTAGTGGAGGTGCCTGGCTTTAGGGAGCTAGAGGAGAACAACATCAGTGTGGAGGATGTTCAGAGCAGAGTTCCAGAGGAATATGTAGGCCGCAGGAACCTGGAGTGTGTGGAGGCTCTACAAGAGAATCCTCTCAACCCCCGGCAGGTCTTGATAGGCTATAGCCGAGGTCTTATGGTTCTTTGGGACCTCGATCGGCGGTGTGCCATTCAGCACTTCCTGGGCACACAGCAGCTGGAAAGTGTGTGGTGGATGGAGGATGGAGGAAACATTCTTAGTTCCCATAGTGATGGCAGCTATTGCCATTGGACTGTGACTGGAAAGGATCCACAGACTGAACCAGAGAAACAAGAGACCCCTTATGGGTCCTTTCCATGCAAAGCCATTTCCAAAATTCTACAAATATCTACAAGACAAGGTCCCCCGTTCCTAATCTTCAGCGGTGGTATGCCAAGGGCCAGCTATGGAGACAGGCATTGTATCTCTGTCATACACAGCAAGACACATGTAGCACTGGACTTCACTTCCCGCATTATAGACTTCTTTGTCATCAGAGACGGAGAGCGCCACAGAGGTGATCCCAGTGCtctggtggtgttggtggaggAGGAACTGGTGGTGGTGGACCTGCAGAGTGAGGGATGGCCGGTGATCCAAACCCCTTACCTAGTGCCACTGCACTGCTCAGCAATCACCTGTTCTCACCATGTCTCCTCCATCCCTCTCAAACTGTGGGAGAGAGTCCAGGCTGCCGGCAAAGTGCAGAACACACACTActcaaaaaagCCTTGGCCAATAAATGGAGGCCAGAATCTTGCCCCAGACCCTCCCCAGAGAGACTTGTTGCTGACTGGTCATGAAGATGGAACAGTGCGTTTCTGGGATGCCTCGGGGGTCTGCCTCTATCCCATGTACAAGTTGAGCACAGCTATGGTTTTCCACACGGACGCAGACCCTAATGACAACATGAACCAGGGGACTGAGGGCGAATGGCCACCCTTTCGCAAGGTGGGCTGCTTTGACCCATACAGTGATGACCCCCGACTTGGAATTCAGAAGATCCATCTGTGTAAATATAGTGGTTACCTGACTGTAGCAGGAACTGCAGGACAAATcctagtgctggagataaatgATGAGGAAGCTGAGCAGACAGTGGAGGCTACAGTAGTGGACCTGCTGCAGGGACAAGAAGGTTTCCGCTGGAAGGGCCAGGCACGTCTGGACCTCCGGGAGGAGCCTGTAACATTTCCCCCAGGATTCCAGCCCTTCGCTCTGGTGCAGTGCCAGCCCCCTGCAGTGGTCACAGCAATTGCCTTGCATTCAGAGTGGaagttggtggcctttgggacCAGCCATGGTTTTGGTGTTTATGACTACCAGCAGAAGAACAACGTCATGGTCAAGTGCACTCTCAACCCCAATGACCAGGTGGCTCTAGAGGGGCCACTGTCTAGAGTGAAGTCCATAAAGAAGTCTCTTCGGCAGTCTTTTCGCCGAATCCGCAGAAGCAGAGTCTCCATGCGCAAACACAATCCCACCAATGCAGCCAAGCTGCATGAGATCAATGCACGGTTAGAGGCAGAAGCTCTGCAAGAAATGGAGTTGGCACCAGTCCAGAGGAAGATTGAAGCTCGCTCTGCTGATGACTCCTTCACAGGCCTCGTCAGGACCCTCTATTTTGCTGACACATTCCTCAGTGACAGCTCTCAAAGCACACCCTCTCTGTGGGCGGGGACTAATGGCGGTGCTGTCTATGCCTACATGCTACGCCTCCCTCCTGTAGAACGAAGGATGGATGATCAACTGACAGCTTATGCAGCTAAAGAGATTCAGCTGATGCATCGTGCTCCAGTTGTAGGCTTGGTGGTTTTGGATGGGAGGGGAGCTCCACTGCCTGAACCACTGGAGGTGGCACATGATCTTGCCCGCAGTCCTGACATGCAGGGTTCTCACCAACTGCTCGTCATCTCAGAAGAGCAGCTAAAGTTATTCAATTTGCCTAAAGTGAGCAGCAAAGCAAAGCTTAAACTGACAGCAATTGACGGTTCTCGAGTGCGTCGAGCCGGAGTGGCCTGGTTTGGCAGCAGTCGAGTGGAGGACTATGGAGAGAGCAGCTTGGTGGTGTTGACCAATCAAGGCGAGCTACATGTGATCTCTCTGCCGTCAATCAAAATGCAAGTGCACTACCCTTGCATCCGAAGAGAGGATGTAAGTGGAATTGCGTCCTGTGTCTTCACCAAACATGGCCAGGGGCTCTACCTGATCTCTCCATCAGAGTTTGAgcgcttttctctctctgcacgCTGGGTGGTGGAGCCACGCAGCCTAGTGGAGCCTCCCACCCAAACCAGACCCACATCAACCTCAAGCCAAGCTCACCAAGACCAACCTGATGGAGTGACTAATGAACAcagAAACATTAGAAGGAACAGCGACAGCTATGAAAACTCTGCTAGACAAGTAATGGAGCATGCTTTGCTGAATGATGAGAATGTGCTTCAGGAGATTCAAAAATCACTAGAAGGAGATCAGATGTTTTTGGAAAACAGTCTGAAGACTAAGCCAACACCAAGCAAGATGCTGAGTAATGGAGATTAAGCCTTGTAACCTGTGCCTGAAACGTCCACTCCGGCCTTGCTGAAGACCTGAACACTACTGCTAGTACCACTACTGAACTATGTGAAGCCCTGGAGAGAGGAACGCCTGCTACACCGTGGGGTGTCAAGGGGACCACCACCTGTGCCTGCCAAGACCAACCACTGTATCTCCTATTCCATAACAACGACCGGCCCCAGCATCAGCCTCTATCTTTCAGCATGCCCCTTCCGCTCCTGTGGGGCTGCAGCTATGCCATCTCAGTGTTGAAGGGCATAAGACTGCTGGCAGGGGcattcctttttaattttttattgtttttatctgttaatttaaatttttacacGCATGATTTTTGTAAGTGATTTGAAGACCTCAAAATCTACATAAATATTGTGTCTCACAAGGGAAAAGATACCAACAGTTATTGGATGGGATTTAAAACATGAAGACGAAGCAGTCTTAGGACTTGTACTAAAGTGCTAAAAACAATGAAGAGTCCTGATGAACCACATGTATAACAAATACTCTTACTAAGTACTCTAAAAGAAGTAGTAATGCCTTTTCTTCCGTCcaggcaacaaaaaaaaaaaaaagagagaacagtGTGTGTAGTTGATGTTGTAGGTACTTTTTCACTACTGTGTAGCACATATGCTGTAATTTTTAGGGGGTACAACTTTCTAAGGGGCTtggtttttaatctttttttattgtcatcTTTTTATGCCAGTTATGCATACTGTAATTTAGGAATGTAATTTTAAGAGATTGTAGtcaaatgtttaatatatatgtatatgaaaaTCTGTACCTTGTTAATGGTGGACTGTATTTTCTGATTAAGGAAATATTTTGGTACTGTCTCTTGAAATGCTCTCAGCATTTCTTGAGTctagaatatatttttgtagttaATTGATCATGTTAAAGAACACTACCATTTGTAATTTGACACTACCATCAAGTCTGCTGAGTaaatttttaaacttttcacCACaa
>XM_007259199.3
GCCTGAGCTGCAGTCAAGAGATCCGTAGCTGCGCTGGCTGGAGGTAAAAGTCCTCCACTCTCAGCGGGCCTGGGGCCGCAGGAAACGGCGAGGCTGCAGTGGGGATCTGGAAGCTGAGAGAAACTGTATGTGTCTGCGTTAACTTTaggttttatatgtgtgttactTTGACCTAAACGTACGGAGTCGGCGGTTTTCCCcctcaaagaaaagaaaagtagtCCTAGGAGTGTGGCCCAACATCCGTAAACAGTGAGGAGAGCCGCTGGGACAACAGCGTCGCCCCGGATCAGAAAGGTGACAGAAGTGCAGAGGGCAGCGAGAGGCCCTTGATTGTCCCGGGAGAATGAAGAGATTCCGGCGACATGGGCATGACACTCAGAGGGACAAACTCAAGCAGGAGCTCTACCAGTTCAATAAGACTGTAGAGCATGGCTTCCCCCACCAACCGAGTGCTCTAGGCTTCAGCCCTAGTCTGGAGCTCCTGGCCATTGGTACCAGATCTGGAGCCATCAAACTCTATGGAGCTCCAGGGGTTGAGTTTATGGGACTGCATGATGAGAATGCTGCAGTCACACAGGTGCACTTTCTCCCACGACAGGTTGAGCTTGTGACTTTATTGGATGACAATAGTCTGCACATGTGGACACTTCGAGCTCATAAAGGTGTATCAGAGCTGTTGGAGATTGGACGCTTTACGCTCACCGGTCCTCCTGGTGCCATTCCTAGCGTGACGCGAGTGACTGCCGTCCTGGCCCATTCTTCAGGTGAGCTGCTTCTGCTGGGCACTGAAGGTGGCCATGTGTTCGTAGTGGAGGTGCCTGGCTTTAGGGAGCTAGAGGAGAACAACATCAGTGTGGAGGATGTTCAGAGCAGAGTTCCAGAGGAATATGTAGGCCGCAGGAACCTGGAGTGTGTGGAGGCTCTACAAGAGAATCCTCTCAACCCCCGGCAGGTCTTGATAGGCTATAGCCGAGGTCTTATGGTTCTTTGGGACCTCGATCGGCGGTGTGCCATTCAGCACTTCCTGGGCACACAGCAGCTGGAAAGTGTGTGGTGGATGGAGGATGGAGGAAACATTCTTAGTTCCCATAGTGATGGCAGCTATTGCCATTGGACTGTGACTGGAAAGGATCCACAGACTGAACCAGAGAAACAAGAGACCCCTTATGGGTCCTTTCCATGCAAAGCCATTTCCAAAATTCTACAAATATCTACAAGACAAGGTCCCCCGTTCCTAATCTTCAGCGGTGGTATGCCAAGGGCCAGCTATGGAGACAGGCATTGTATCTCTGTCATACACAGCAAGACACATGTAGCACTGGACTTCACTTCCCGCATTATAGACTTCTTTGTCATCAGAGACGGAGAGCGCCACAGAGGTGATCCCAGTGCtctggtggtgttggtggaggAGGAACTGGTGGTGGTGGACCTGCAGAGTGAGGGATGGCCGGTGATCCAAACCCCTTACCTAGTGCCACTGCACTGCTCAGCAATCACCTGTTCTCACCATGTCTCCTCCATCCCTCTCAAACTGTGGGAGAGAGTCCAGGCTGCCGGCAAAGTGCAGAACACACACTActcaaaaaagCCTTGGCCAATAAATGGAGGCCAGAATCTTGCCCCAGACCCTCCCCAGAGAGACTTGTTGCTGACTGGTCATGAAGATGGAACAGTGCGTTTCTGGGATGCCTCGGGGGTCTGCCTCTATCCCATGTACAAGTTGAGCACAGCTATGGTTTTCCACACGGACGCAGACCCTAATGACAACATGAACCAGGGGACTGAGGGCGAATGGCCACCCTTTCGCAAGGTGGGCTGCTTTGACCCATACAGTGATGACCCCCGACTTGGAATTCAGAAGATCCATCTGTGTAAATATAGTGGTTACCTGACTGTAGCAGGAACTGCAGGACAAATcctagtgctggagataaatgATGAGGAAGCTGAGCAGACAGTGGAGGCTACAGTAGTGGACCTGCTGCAGGGACAAGAAGGTTTCCGCTGGAAGGGCCAGGCACGTCTGGACCTCCGGGAGGAGCCTGTAACATTTCCCCCAGGATTCCAGCCCTTCGCTCTGGTGCAGTGCCAGCCCCCTGCAGTGGTCACAGCAATTGCCTTGCATTCAGAGTGGaagttggtggcctttgggacCAGCCATGGTTTTGGTGTTTATGACTACCAGCAGAAGAACAACGTCATGGTCAAGTGCACTCTCAACCCCAATGACCAGGTGGCTCTAGAGGGGCCACTGTCTAGAGTGAAGTCCATAAAGAAGTCTCTTCGGCAGTCTTTTCGCCGAATCCGCAGAAGCAGAGTCTCCATGCGCAAACACAATCCCACCAATGCAGCCAAGCTGCATGAGATCAATGCACGGTTAGAGGCAGAAGCTCTGCAAGAAATGGAGTTGGCACCAGTCCAGAGGAAGATTGAAGCTCGCTCTGCTGATGACTCCTTCACAGGCCTCGTCAGGACCCTCTATTTTGCTGACACATTCCTCAGTGACAGCTCTCAAAGCACACCCTCTCTGTGGGCGGGGACTAATGGCGGTGCTGTCTATGCCTACATGCTACGCCTCCCTCCTGTAGAACGAAGGATGGATGATCAACTGACAGCTTATGCAGCTAAAGAGATTCAGCTGATGCATCGTGCTCCAGTTGTAGGCTTGGTGGTTTTGGATGGGAGGGGAGCTCCACTGCCTGAACCACTGGAGGTGGCACATGATCTTGCCCGCAGTCCTGACATGCAGGGTTCTCACCAACTGCTCGTCATCTCAGAAGAGCAGCTAAAGTTATTCAATTTGCCTAAAGTGAGCAGCAAAGCAAAGCTTAAACTGACAGCAATTGACGGTTCTCGAGTGCGTCGAGCCGGAGTGGCCTGGTTTGGCAGCAGTCGAGTGGAGGACTATGGAGAGAGCAGCTTGGTGGTGTTGACCAATCAAGGCGAGCTACATGTGATCTCTCTGCCGTCAATCAAAATGCAAGTGCACTACCCTTGCATCCGAAGAGAGGATGTAAGTGGAATTGCGTCCTGTGTCTTCACCAAACATGGCCAGGGGCTCTACCTGATCTCTCCATCAGAGTTTGAgcgcttttctctctctgcacgCTGGGTGGTGGAGCCACGCAGCCTAGTGGAGCCTCCCACCCAAACCAGACCCACATCAACCTCAAGCCAAGCTCACCAAGACCAACCTGATGGAGTGACTAATGAACAcagAAACATTAGAAGGAACAGCGACAGCTATGATGTGCTTCAGGAGATTCAAAAATCACTAGAAGGAGATCAGATGTTTTTGGAAAACAGTCTGAAGACTAAGCCAACACCAAGCAAGATGCTGAGTAATGGAGATTAAGCCTTGTAACCTGTGCCTGAAACGTCCACTCCGGCCTTGCTGAAGACCTGAACACTACTGCTAGTACCACTACTGAACTATGTGAAGCCCTGGAGAGAGGAACGCCTGCTACACCGTGGGGTGTCAAGGGGACCACCACCTGTGCCTGCCAAGACCAACCACTGTATCTCCTATTCCATAACAACGACCGGCCCCAGCATCAGCCTCTATCTTTCAGCATGCCCCTTCCGCTCCTGTGGGGCTGCAGCTATGCCATCTCAGTGTTGAAGGGCATAAGACTGCTGGCAGGGGcattcctttttaattttttattgtttttatctgttaatttaaatttttacacGCATGATTTTTGTAAGTGATTTGAAGACCTCAAAATCTACATAAATATTGTGTCTCACAAGGGAAAAGATACCAACAGTTATTGGATGGGATTTAAAACATGAAGACGAAGCAGTCTTAGGACTTGTACTAAAGTGCTAAAAACAATGAAGAGTCCTGATGAACCACATGTATAACAAATACTCTTACTAAGTACTCTAAAAGAAGTAGTAATGCCTTTTCTTCCGTCcaggcaacaaaaaaaaaaaaaagagagaacagtGTGTGTAGTTGATGTTGTAGGTACTTTTTCACTACTGTGTAGCACATATGCTGTAATTTTTAGGGGGTACAACTTTCTAAGGGGCTtggtttttaatctttttttattgtcatcTTTTTATGCCAGTTATGCATACTGTAATTTAGGAATGTAATTTTAAGAGATTGTAGtcaaatgtttaatatatatgtatatgaaaaTCTGTACCTTGTTAATGGTGGACTGTATTTTCTGATTAAGGAAATATTTTGGTACTGTCTCTTGAAATGCTCTCAGCATTTCTTGAGTctagaatatatttttgtagttaATTGATCATGTTAAAGAACACTACCATTTGTAATTTGACACTACCATCAAGTCTGCTGAGTaaatttttaaacttttcacCACaa

Function

symbol description
llgl2 Predicted to enable GTPase activator activity and myosin II binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; hemidesmosome assembly; and photoreceptor cell morphogenesis. Predicted to be located in cytoskeleton. Predicted to be active in cortical actin cytoskeleton and plasma membrane. Is expressed in several structures, including EVL; Kupffer's vesicle; digestive system; mesoderm; and sensory system. Orthologous to human LLGL2 (LLGL scribble cell polarity complex component 2).

NR:

description
lethal(2) giant larvae protein homolog 2-like isoform X1

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0031581 hemidesmosome assembly biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0010719 negative regulation of epithelial to mesenchymal transition biological_process
GO:0050680 negative regulation of epithelial cell proliferation biological_process
GO:0007049 cell cycle biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0045682 regulation of epidermis development biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06094 LLGL; lethal(2) giant larvae protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259197.3 True 4408 mRNA 0.49 26 4943870 4966430
XM_007259199.3 False 4360 mRNA 0.49 25 4943870 4966430

Neighbor

gene id symbol gene type direction distance location
galk1 galk1 coding upstream 421 4938999 ~ 4943449 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding upstream 6844 4931415 ~ 4937026 (+)
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding upstream 111322 4829038 ~ 4832548 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding upstream 124566 4799103 ~ 4819304 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding upstream 373021 4526945 ~ 4570849 (+)
chac2 chac2,LOC107749368,LOC107686371 coding downstream 1144 4967574 ~ 4971335 (+)
thbs2 thbs2b,LOC108426506,LOC108274281,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836 coding downstream 64377 5030807 ~ 5053505 (+)
LOC103029028 LOC108426433,LOC107581628 coding downstream 103623 5070053 ~ 5077912 (+)
LOC103044692 LOC108426432 coding downstream 120579 5087009 ~ 5099703 (+)
aldh18a1 aldh18a1,LOC107755531 coding downstream 180910 5147340 ~ 5158697 (+)
G34409 mfsd13a,LOC107755491,LOC107565800,LOC107690908 non-coding upstream 68316 4875138 ~ 4875554 (+)
G34410 mfsd13a non-coding upstream 72450 4870364 ~ 4871420 (+)
G34396 sfxn2 non-coding upstream 115964 4824343 ~ 4827906 (+)
G34394 NA non-coding upstream 168529 4775021 ~ 4775341 (+)
G34393 NA non-coding upstream 169018 4773886 ~ 4774852 (+)
G34485 NA non-coding downstream 5355 4971785 ~ 4973087 (+)
G34489 NA non-coding downstream 12317 4978747 ~ 4979412 (+)
G34500 NA non-coding downstream 87933 5054363 ~ 5056352 (+)
G34532 NA non-coding downstream 141380 5107810 ~ 5125290 (+)
G34534 NA non-coding downstream 168969 5135399 ~ 5135654 (+)
LOC103025551 sema4g other upstream 19104 4882556 ~ 4924766 (+)
G34309 NA other upstream 765787 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 1284738 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2886907 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 3555851 1369173 ~ 1388019 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 726092 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 1280216 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 1535715 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 1626177 6592607 ~ 6663607 (+)
G34931 NA other downstream 1764524 6730954 ~ 6731424 (+)

Expression


Co-expression Network