chac2 (chac2,LOC107749368,LOC107686371)


Basic Information

Item Value
gene id chac2
gene name chac2,LOC107749368,LOC107686371
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4967574 ~ 4971335 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259200.3
CGCGTCATTTCCGGGTATGTTGTGTTTGGTTCGCCGGTGCGAACCTGACCTCCAGCCCTCCTCTCCCCGGCTCTCCTGCGCTCTCTCTACccggtctgctgctgctgctttttggCGGTATGAGCCGCTGACTCTCCGCGCCGTGCTGTAGCTGTGGCTGTGCTGTGGAGATGTGGGTTTTCGGTTACGGGTCTCTGATCTGGAAAGTGGACTTTCCGTACGAGGAGAAGCGCGTGGGCTTCATTAGGGGATTCAGCCGCCGGTTCTGGCAGGGGAGCACGGATCACCGGGGGGTTCCTGGAAAGCCTGGACGTGTGGTGACACTAATAGAAGATCCTGAGGGATGTGTTTGGGGTGTTGCTTACAAGTTGCCTTCAGGACGGGAGAAGGAGGTGAAGGAGTATCTTGACTACAGGGAGAAAGGAGGATACAGTGTGCTGACAGTAACCTTCCATCCTAAAGAAGAAGATGAGCCGATGCAAGACACGCTTCTCTACATCGGCTCACATGACAACCCGAACTACCTCGGCCCAGCGCCTCTGGAACTGATCGCCCAGCAGATCCTGAAGTCTGTAGGTCCCAGCGGGAGGAACACGGAGTACCTGTTTGAGCTGGCTGAGGCTCTGAGACAGCTGGTCCCTGAAGACTCAGATGATCACCTGTTCTCTCTTGAGCGGATGGTCAAGGATCTGTTGCAGGAGTCAGCTGAGTGACCCCAGCTCAACCTGATAATCTGCTCAGCTGGATGAACTTGCTTCACACCTTATCCAGGACGGATCTCCAAAGCGCAGCCAGTTCGTACAGGAAGAGGTGATCGCTGGCCAAGTCATCACACTCGCACTTTGCACAGAATTGTAGCCGAGagtataaaacacaaaactgaGCTGCAGGTAACGTCCAACAACTTTACCTCACGAACAGTGTACTGTTTTAGTCTGTATATTTATACACTTTACGTATTGTCACGATCACACAAAAACTACACTTTTCAAATGTTAATTTGGAATGGATCAGTAGAAACAATCCAAAATGGCTTGGTTTAAAAGCCTTCCTCTGAATTAcacagacatttaaaaaagtttttttgtgcgagagtgagaatatttttaataacacaGTTAAAGAAACAAATTCAAGAATGGTGTGGGGAATGTGTGTATCTCAGTTATCTGTCtgattgtttctttatttaagaATGTAAATTAACGTATTTTAAATGAGTTATATACACTGagcatgtcatgggacaggaggACACACATGAGTGGACagacactgtccactgtgggtggtaatgttgCTTTGCCATGATTGTGGCCAGTATTCAACCTCACAGCTCCCCAGAGGCAACACTTCTTGGTCGATTAACAAACTGGTATCCCGTGACTTTTGACATAGCAGTGTACCAagccatatttatttttatcattttaagctTAGGAGGATGTCATTATTACTGAAAGTCTGATAAGTTAAGCTGGGGAGGAGCAGGGGTGGGCCTACAAGGGAAAAATGCTGTGTAATGTATTAAAGCTGTGTTTCTATTAAATACACTGCCTAATTCATGAAGGGTGTGGGGAAATGTGTCTTGGTCACGAATGTACACTTACTCAGTAGGCatgtggtgttaatgttatggcttagGGCTGTACGATATTGGAAAatgtttacattgcaaatgttattttttaaactctatatattgcgatattaaaaagtattataGAATGCAT
>XM_007259201.3
CGCGTCATTTCCGGGTATGTTGTGTTTGGTTCGCCGGTGCGAACCTGACCTCCAGCCCTCCTCTCCCCGGCTCTCCTGCGCTCTCTCTACccggtctgctgctgctgctttttggCGGTATGAGCCGCTGACTCTCCGCGCCGTGCTGTAGCTGTGGCTGTGCTGTGGAGATGTGGGTTTTCGGTTACGGGTCTCTGATCTGGAAAGTGGACTTTCCGTACGAGGAGAAGCGCGTGGGCTTCATTAGGGGATTCAGCCGCCGGTTCTGGCAGGGGAGCACGGATCACCGGGGGGTTCCTGGAAAGGGATGTGTTTGGGGTGTTGCTTACAAGTTGCCTTCAGGACGGGAGAAGGAGGTGAAGGAGTATCTTGACTACAGGGAGAAAGGAGGATACAGTGTGCTGACAGTAACCTTCCATCCTAAAGAAGAAGATGAGCCGATGCAAGACACGCTTCTCTACATCGGCTCACATGACAACCCGAACTACCTCGGCCCAGCGCCTCTGGAACTGATCGCCCAGCAGATCCTGAAGTCTGTAGGTCCCAGCGGGAGGAACACGGAGTACCTGTTTGAGCTGGCTGAGGCTCTGAGACAGCTGGTCCCTGAAGACTCAGATGATCACCTGTTCTCTCTTGAGCGGATGGTCAAGGATCTGTTGCAGGAGTCAGCTGAGTGACCCCAGCTCAACCTGATAATCTGCTCAGCTGGATGAACTTGCTTCACACCTTATCCAGGACGGATCTCCAAAGCGCAGCCAGTTCGTACAGGAAGAGGTGATCGCTGGCCAAGTCATCACACTCGCACTTTGCACAGAATTGTAGCCGAGagtataaaacacaaaactgaGCTGCAGGTAACGTCCAACAACTTTACCTCACGAACAGTGTACTGTTTTAGTCTGTATATTTATACACTTTACGTATTGTCACGATCACACAAAAACTACACTTTTCAAATGTTAATTTGGAATGGATCAGTAGAAACAATCCAAAATGGCTTGGTTTAAAAGCCTTCCTCTGAATTAcacagacatttaaaaaagtttttttgtgcgagagtgagaatatttttaataacacaGTTAAAGAAACAAATTCAAGAATGGTGTGGGGAATGTGTGTATCTCAGTTATCTGTCtgattgtttctttatttaagaATGTAAATTAACGTATTTTAAATGAGTTATATACACTGagcatgtcatgggacaggaggACACACATGAGTGGACagacactgtccactgtgggtggtaatgttgCTTTGCCATGATTGTGGCCAGTATTCAACCTCACAGCTCCCCAGAGGCAACACTTCTTGGTCGATTAACAAACTGGTATCCCGTGACTTTTGACATAGCAGTGTACCAagccatatttatttttatcattttaagctTAGGAGGATGTCATTATTACTGAAAGTCTGATAAGTTAAGCTGGGGAGGAGCAGGGGTGGGCCTACAAGGGAAAAATGCTGTGTAATGTATTAAAGCTGTGTTTCTATTAAATACACTGCCTAATTCATGAAGGGTGTGGGGAAATGTGTCTTGGTCACGAATGTACACTTACTCAGTAGGCatgtggtgttaatgttatggcttagGGCTGTACGATATTGGAAAatgtttacattgcaaatgttattttttaaactctatatattgcgatattaaaaagtattataGAATGCAT

Function

symbol description
chac2 Predicted to enable gamma-glutamylcyclotransferase activity. Predicted to be involved in glutathione catabolic process. Predicted to be active in cytoplasm. Orthologous to human CHAC2 (ChaC glutathione specific gamma-glutamylcyclotransferase 2).

NR:

description
PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2

GO: NA

KEGG:

id description
K07232 CHAC, chaC; glutathione-specific gamma-glutamylcyclotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259200.3 True 1733 mRNA 0.46 3 4967574 4971335
XM_007259201.3 False 1697 mRNA 0.46 2 4967574 4971335

Neighbor

gene id symbol gene type direction distance location
llgl2 llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216 coding upstream 1144 4943870 ~ 4966430 (+)
galk1 galk1 coding upstream 24125 4938999 ~ 4943449 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding upstream 30548 4931415 ~ 4937026 (+)
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding upstream 135026 4829038 ~ 4832548 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding upstream 148270 4799103 ~ 4819304 (+)
thbs2 thbs2b,LOC108426506,LOC108274281,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836 coding downstream 59472 5030807 ~ 5053505 (+)
LOC103029028 LOC108426433,LOC107581628 coding downstream 98718 5070053 ~ 5077912 (+)
LOC103044692 LOC108426432 coding downstream 115674 5087009 ~ 5099703 (+)
aldh18a1 aldh18a1,LOC107755531 coding downstream 176005 5147340 ~ 5158697 (+)
zdhhc6 zdhhc6,LOC107684040,LOC107722226,LOC107755527,LOC107702458 coding downstream 602130 5573465 ~ 5579442 (+)
G34409 mfsd13a,LOC107755491,LOC107565800,LOC107690908 non-coding upstream 92020 4875138 ~ 4875554 (+)
G34410 mfsd13a non-coding upstream 96154 4870364 ~ 4871420 (+)
G34396 sfxn2 non-coding upstream 139668 4824343 ~ 4827906 (+)
G34394 NA non-coding upstream 192233 4775021 ~ 4775341 (+)
G34393 NA non-coding upstream 192722 4773886 ~ 4774852 (+)
G34485 NA non-coding downstream 450 4971785 ~ 4973087 (+)
G34489 NA non-coding downstream 7412 4978747 ~ 4979412 (+)
G34500 NA non-coding downstream 83028 5054363 ~ 5056352 (+)
G34532 NA non-coding downstream 136475 5107810 ~ 5125290 (+)
G34534 NA non-coding downstream 164064 5135399 ~ 5135654 (+)
LOC103025551 sema4g other upstream 42808 4882556 ~ 4924766 (+)
G34309 NA other upstream 789491 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 1308442 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2910611 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 3579555 1369173 ~ 1388019 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 721187 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 1275311 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 1530810 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 1621272 6592607 ~ 6663607 (+)
G34931 NA other downstream 1759619 6730954 ~ 6731424 (+)

Expression


Co-expression Network