LOC103030716 (crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435)


Basic Information

Item Value
gene id LOC103030716
gene name crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5163950 ~ 5165625 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259211.3
TGCAGCAGCGTGAGGGTGCATACATCCTGCCCTGCAACCATGGGAAAGATCATCTTTTACGAAGGACGCAATTTCCAGGGGAAACATTATGAGTGCTCTGAGGACTGCTCCGACACCTTCAGGCACTTCAGCTGCTGCAACTCCATCCGGATCATGGGGGGTTACTGGGTGGCCTATGAGAAGCCCAACTTCATGGGTTATCAGTACGTCATGGGCCGTGGGGAGTACCCTGACTTTCACCACTGGATGGGCTTCAACAATTGCATCAGATCTTGTCAGATGTTTCCCCCATACAGAGGAGCCTACAAGATGAGAATCTACAACAGACCTGAAATGTCTGGACACATGATGGAGTTTTCAGAGGACTGCCCCAATGTCTTTGACCGCTTCCACTACCGTGACATCTATTCTGCCCATGTCATGGAGGGATACTGGATCTTCTATGAGCACCCACACTACAGAGGCCGTCAGTACTTCTTGAGACCCGGAATGTACAGAGCCTGTGCAGACTGGGGCTGCTACAATCCCATGATTGGCTCCTTCAGGAGAATGAGAGGCAGTTTCATGTAGACTAAACTTAAACCTGTGGGATTAGGGTACTATTAAAGGCTGGTTTTATTAACACTTG
>XM_022669411.1
CGTGAGGGTGCATACATCCTGCCCTGCAACCATGGGAAAGCTGTTTAAGAAGATCATCTTTTACGAAGGACGCAATTTCCAGGGGAAACATTATGAGTGCTCTGAGGACTGCTCCGACACCTTCAGGCACTTCAGCTGCTGCAACTCCATCCGGATCATGGGGGGTTACTGGGTGGCCTATGAGAAGCCCAACTTCATGGGTTATCAGTACGTCATGGGCCGTGGGGAGTACCCTGACTTTCACCACTGGATGGGCTTCAACAATTGCATCAGATCTTGTCAGATGTTTCCCCCATACAGAGGAGCCTACAAGATGAGAATCTACAACAGACCTGAAATGTCTGGACACATGATGGAGTTTTCAGAGGACTGCCCCAATGTCTTTGACCGCTTCCACTACCGTGACATCTATTCTGCCCATGTCATGGAGGGATACTGGATCTTCTATGAGCACCCACACTACAGAGGCCGTCAGTACTTCTTGAGACCCGGAATGTACAGAGCCTGTGCAGACTGGGGCTGCTACAATCCCATGATTGGCTCCTTCAGGAGAATGAGAGGCAGTTTCATGTAGACTAAACTTAAACCTGTGGGATTAGGGTACTATTAAAGGCTGGTTTTATTAACACTTG

Function

symbol description
crygmxl2 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C).

NR:

description
gamma-crystallin M2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259211.3 False 628 mRNA 0.50 3 5163950 5165625
XM_022669411.1 True 632 mRNA 0.49 4 5163950 5165617

Neighbor

gene id symbol gene type direction distance location
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding downstream 484 5160908 ~ 5163466 (-)
entpd1 NA coding downstream 38752 5099968 ~ 5125198 (-)
mrpl43 mrpl43,LOC107722220,LOC107581592,LOC107565786 coding downstream 233243 4927516 ~ 4930707 (-)
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107684076,LOC107690908,LOC107755491 coding downstream 285191 4870049 ~ 4878759 (-)
LOC103024913 trim8,trim8b,LOC107581594,LOC107684075,LOC107565801,LOC107755490 coding downstream 295821 4853007 ~ 4868129 (-)
vti1a vti1a,LOC107566351,LOC107702459 coding upstream 235303 5400928 ~ 5571634 (-)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding upstream 413705 5579330 ~ 5596438 (-)
tectb tectb,LOC107755437,LOC107566341,LOC107702437,LOC107722201 coding upstream 434743 5600368 ~ 5687159 (-)
nrap nrap,LOC107755535 coding upstream 605994 5771619 ~ 5803122 (-)
LOC103041412 LOC103041412,LOC108426492 coding upstream 653097 5818722 ~ 5822431 (-)
G34543 aldh18a1,LOC107707764 non-coding downstream 11537 5151372 ~ 5152413 (-)
G34544 aldh18a1,LOC107684039 non-coding downstream 12987 5150310 ~ 5150963 (-)
G34542 NA non-coding downstream 19894 5143724 ~ 5144056 (-)
G34541 NA non-coding downstream 20615 5143072 ~ 5143335 (-)
G34526 NA non-coding downstream 85102 5078535 ~ 5078848 (-)
G34556 NA non-coding upstream 25408 5191033 ~ 5193859 (-)
G34682 NA non-coding upstream 225470 5391095 ~ 5391320 (-)
G34688 zdhhc6,LOC107684040,LOC107722226,LOC107581631 non-coding upstream 407848 5573473 ~ 5574758 (-)
G34708 NA non-coding upstream 479281 5644906 ~ 5645105 (-)
G34713 NA non-coding upstream 493399 5659024 ~ 5659904 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 168037 4971698 ~ 4995913 (-)
G34214 NA other downstream 1280481 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1374758 3783125 ~ 3789192 (-)
G34046 NA other downstream 1969573 3181168 ~ 3194377 (-)
G33904 NA other downstream 2854621 2303262 ~ 2309329 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 89994 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 737963 5903588 ~ 5928154 (-)
G34770 NA other upstream 770210 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 883376 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 1201059 6366684 ~ 6513701 (-)

Expression


Co-expression Network