cpn1 (cpn1,LOC107722209,LOC107684044,LOC107702463)


Basic Information

Item Value
gene id cpn1
gene name cpn1,LOC107722209,LOC107684044,LOC107702463
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5669067 ~ 5684163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259238.3
gagagggagagagagagagggggaaggaGAGCAAGACTGAACTtgaaagaaagagtgtgagagagtgagtgagtgagtgggtttGTAAGTTTGTGGAGCTGAAGCTGAAGCATGCTGTCTCTGGTGTGGTCTGGAGTTCTGCTCCTGGTGCTCTGGGCTCCAGAGGCCCAGGCCATTGATGACTTCCAGCACCATGGCTATGAGGAGATGGTGCGTGCCCTGTTCTCTGTGCAGAGCCAGTGCCCCTACATCACCCGCATCTACAGCATCGGCCGCAGCGTAGAGGGGCGCCACCTCTACGTGCTGGAGTTCAGCGACAGCCCTGGCATCCATGAAGCATTGGAGCCGGAGTTCAAGTATGTGGGCAACATGCATGGAAACGAGGTGCTGGGCCGCGAGCTCCTTATCCACTTGTGCCAGTTCCTGTGTGAGGAGTACCTCGCGGGCAACCAGCGCATAACCAGCCTTATCCACAACACACGCATCCACATCCTGCCCTCCATGAACCCAGACGGCTATGAGGTGGCAGCCAGGCAGGGTCCAGAATTTAACGGATACCTAGTGGGCCGTGGGAACTCCAGAGAAGTTGACCTCAATCGCAATTTTCCAGACTTAAATGGCCTCATGTACTACTACGAGAAGAACAACGGGCAAAACCATCACCTGCCCCTCCCTGACAAATGGGAACTACAGGTTGAACCAGAAACGCTGGCAGTAATTAAATGGATGCAGAACTATAACTTTATTCTATCAGCAAACCTGCATGGAGGAGCAGTGGTGGCCAACTATCCTTTCGATAAATCTAGAGAGGCTCGTATTAGAGGAAAGTCTACATATTCAGCCACCCCCGATGACAAGATCTTTAAAAAGtTGGCAAAAGCCTACTCATATGCTCACAGTTGGATGCATAAAGGCTGGAATTGTGGAGACTACTTTGAGGAGGGCATTACCAATGGAGCCAACTGGTACTCTTTGTCCAAAGGCATGCAGGACTTTAACTACCTCTACACTAACTGCTTTGAGATCACTCTGGAGCTGAGCTGTGATAAGTTCCCCCCAGCAAGTGCTCTATCCAGGGAGTGGCTAGCCAACAGGGAGGCTCTGGTGTCCTACATGGAACAGGTACACCACGGCATTAAAGGAATGGTCTATGATGAGAACAACAACCCCATCGGCAATGCAGAAATCTCAGTGGCTGGCATAAGCCATGACATCACCACTGGACCAGATGGAGACTACTTCCGTCTGCTTTTGCCAGGGACCTACACTGTCACTGCCTCTGCAGCAGGGTACCAGCCCTATAGCAGTACAGTCACAGTTGGCCCTGCAGAGGCCATACAGttacaCTTCTATCTGAAACCTGCACCTAAAGGGACAAACTTGAATGTGAGGGGCCATCAAGGCAAGAAAAACTTGTCCACTGCCAAGGTTCCTCCAGCCAACCTCGGCCcaagataaaaacaacaaaaaaaacagatggacACTTCCCTCAACAAAGAGAAACTCCCATCTCTTTCCCAGAAATGAGAAGGAGGTGAAGAATGTGGAGAGGCACAAGCTAACTCCGTCACAAACCTCACCTTTTCTATTCATTGAAATATATCTTCCAGAGTCCTCCgtttgtattgatttttaatagaGTGTTTTTCCTACACGGGCATTCTTTTGCTATGAGTGTCATATTTATGTAATACATAAGAAATGTATGTGTTAAATAACaatgaaaaagtaaaatgtgaaaagtgtCAGGAATAATATCCATACTGTAATTTAGGTAATTAAGCAATATTATGAAGTGCAACCCACATTGTACATCAGCACTTATAGACAGTGAACAACAAGACCACAGTCATCGAAGACATTTTGCAGTCAAAAACTGCACCATCAAATATGCCAGTAATGTGGGTTTTTAATCAGGATTGTCTTGGGAATTTGacattttacaaacattttacaatttgaataataaaaattcACCTTCTACATTAAA

Function

symbol description
cpn1 Predicted to enable metallocarboxypeptidase activity. Acts upstream of or within cellular response to estrogen stimulus; liver development; and sprouting angiogenesis. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; mesoderm; nervous system; pectoral fin cartilage; and vasculature. Human ortholog(s) of this gene implicated in carboxypeptidase N deficiency. Orthologous to human CPN1 (carboxypeptidase N subunit 1).

NR:

description
carboxypeptidase N catalytic chain isoform X3

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0006508 proteolysis biological_process
GO:0001889 liver development biological_process
GO:0005615 extracellular space cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01292 CPN1; carboxypeptidase N catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259238.3 True 1990 mRNA 0.47 9 5669067 5684163

Neighbor

gene id symbol gene type direction distance location
LOC103038312 NA coding upstream 15390 5642317 ~ 5653677 (+)
gpam gpam,LOC107702461,LOC107755524,LOC107566297,LOC107581571,LOC107722223 coding upstream 27272 5615695 ~ 5641795 (+)
LOC103039360 LOC108426428 coding upstream 61676 5596081 ~ 5607391 (+)
zdhhc6 zdhhc6,LOC107684040,LOC107722226,LOC107755527,LOC107702458 coding upstream 89625 5573465 ~ 5579442 (+)
aldh18a1 aldh18a1,LOC107755531 coding upstream 510370 5147340 ~ 5158697 (+)
LOC107197899 NA coding downstream 73909 5758072 ~ 5764882 (+)
LOC103045303 NA coding downstream 81693 5765856 ~ 5771877 (+)
casp7 casp7 coding downstream 122999 5807162 ~ 5819997 (+)
LOC107197901 NA coding downstream 140225 5824388 ~ 5828009 (+)
plekhs1 NA coding downstream 145471 5829634 ~ 5841843 (+)
G34606 NA non-coding upstream 9165 5659266 ~ 5659902 (+)
G34605 NA non-coding upstream 9868 5658969 ~ 5659199 (+)
G34587 vti1a,LOC107566351,LOC107702459 non-coding upstream 97386 5400955 ~ 5571681 (+)
G34580 NA non-coding upstream 282889 5385883 ~ 5386178 (+)
LOC111192354 NA non-coding upstream 370046 5209468 ~ 5299021 (+)
G34615 NA non-coding downstream 55451 5739614 ~ 5742444 (+)
G34602 NA non-coding downstream 104595 5788758 ~ 5793818 (+)
G34636 dclre1a non-coding downstream 160739 5844902 ~ 5847925 (+)
G34644 ccdc186,LOC107755417,LOC107566113 non-coding downstream 230078 5914241 ~ 5916402 (+)
G34657 NA non-coding downstream 282525 5966688 ~ 5967194 (+)
LOC103025551 sema4g other upstream 744301 4882556 ~ 4924766 (+)
G34309 NA other upstream 1490984 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 2009935 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 3612104 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 4281048 1369173 ~ 1388019 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 8359 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 562483 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 817982 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 908444 6592607 ~ 6663607 (+)
G34931 NA other downstream 1046791 6730954 ~ 6731424 (+)

Expression


Co-expression Network