plekhs1


Basic Information

Item Value
gene id plekhs1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5829634 ~ 5841843 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259255.3
CAAAAGCAGTGCTCAGGTTCCCTCTCCTGCACTTTTCTAGTACAGAGTTAGAGTAGAACAGAGGACCTAGTGCTTCCTGATTCAgAGCCGTTTCCAATGTCGTCTAATCCAGCTACTCCCCGATGGATTCCAGTGGGTCGAAATTCCCTGTTTTATGAGCAGCCAAAAGATGATGTGGAGGAGgtgcagtcaggctacctctttAAATCACCACCTAAGTCTCTCCTCACTAAATCCATGAAATCATGGAAGCGGAGGTACTTTGTTCTCACTATGATCAACGGGCACCTCCACGAGCTGAAGTACTACAGGGATGAAAACAAGAAAGACAAACCCTTAGGAGAAATTGACCTGTATgaaacCTCTTTGCTTTTCCTGCAACCGGAAACACACCCTACTTGGGAATGGATTCAGAAGAATTTCAGATGCTCTTCATCTTGTGTTCTGTTCATGAGGGTGCTAGAGAGAGACTATTTCCTCATTGGAGAAAACAGTTCTGAGATGGACAGCTGGTTCAATGCCATATTTGCAGCTCTcaagacacacacactgatcagcCCGGAGGAACACAGAAAGACCAGGTCAATATCGGAGCCCAATGATGTACAAACATCCTATAATGATCAAGAACTTGACACTGAAAATGAAGAACAGCCGATCCAGAGAAAATCTCCTGCATTAAGACGCTCTGCCCCTGAATTGCCGACACAGAACCACTACGATGTTCCAAGGAGTATTATGATGCAGGCATCAGTAACAAGCGAtaatgaggaagaggaggaggacacCAGCTACTACATGGACATGGAAAAAGTGAAGAGGGTTGTGAGTGAGGTGGACAAGGAAGATGAATTGACCCGTCAAGCACAgAGGAAAATTTCAAATCGCAGATCACCTATGTCTTTAAGCGCCATTCTCTGTAATGGACAAGCTGACAAGAGTCATGGTACAGGAGATTTATCCGAATCCAGACTACCTGGAGGAGATGAAGGCCCTGAGGATGCATTCCTGAACAGTGGTTCCACTGGTTGGAGCAGACAGATTCTGCAGGGGAGTGAAACAGACAACGCTGAGAAGAAGGATATTTGTGTGAACCAGGAGGAGCTAAGGAACAATGCGATCTTCACAGAAGAAGCAGGAAAACCTTGTGTGTCTGACTGGAAACATGATGAATCTTCTGGTCCATTCCATGAGGGGGATCAAATCGTGGCCATTAATGATTTGCTCACAGACAGTCTGGAGGAGGTACATACTTATCTGCGGAGGCTTAGCAAAGATGAGGTAAAACTAACTATCCTGAGACAGCCAGGCTCTCGACCTTTGAGTGGATGCAGTTTGTAGAGCATATTCTGACTCTATAGCACCTGCCTCCACAATGTATTGCTCATTGCTGTTAGTATAAAGATGTATTATATATGTAGGGTCTGGTGCAGTGCTTGATAATGAGCagtgctgctgtttaaaaatgaaatgttattatCTTGTCTCTTTTGTTTTGGGTTACTACTGCATAGCACGGATCCCTCTAGTGGTTTTTGCTTGAATTACAATGTGAAGATAAACTGCTTATATGCACACTAAATATGCACTTTGTGATAAAATCTTCTTATCagcataaaaatgtttaatcttGTAATACGCACTGAATTACTAAATGCACTTACAGGAAAAGCAtgttaaatagcctaaatgtttgtaatatttgattgcactgtatatattgtattataataaataactatattCAACAATACCTACTATGACATAAGCCTTCAGTGTGTATCAGCAAATAAAGATTTCTGTACTGTAA
>XM_022668962.1
GCCAAATTTAATTTCCCTTTATTTGCCCTGTGTTCCAGTTTCTGCTGGAAGGTCCTGTATGGATAAGGTTTGGATAACAGCTCTTAAACATGCATGCTGGGAAAGACATTCACCCAGGGGATGGACTTCTTGTCAAGACTACTTCCAAAACACCTGAAGCCCTGCCTCTTGTTGATGTCACCAGAGCCGTTTCCAATGTCGTCTAATCCAGCTACTCCCCGATGGATTCCAGTGGGTCGAAATTCCCTGTTTTATGAGCAGCCAAAAGATGATGTGGAGGAGgtgcagtcaggctacctctttAAATCACCACCTAAGTCTCTCCTCACTAAATCCATGAAATCATGGAAGCGGAGGTACTTTGTTCTCACTATGATCAACGGGCACCTCCACGAGCTGAAGTACTACAGGGATGAAAACAAGAAAGACAAACCCTTAGGAGAAATTGACCTGTATgaaacCTCTTTGCTTTTCCTGCAACCGGAAACACACCCTACTTGGGAATGGATTCAGAAGAATTTCAGATGCTCTTCATCTTGTGTTCTGTTCATGAGGGTGCTAGAGAGAGACTATTTCCTCATTGGAGAAAACAGTTCTGAGATGGACAGCTGGTTCAATGCCATATTTGCAGCTCTcaagacacacacactgatcagcCCGGAGGAACACAGAAAGACCAGGTCAATATCGGAGCCCAATGATGTACAAACATCCTATAATGATCAAGAACTTGACACTGAAAATGAAGAACAGCCGATCCAGAGAAAATCTCCTGCATTAAGACGCTCTGCCCCTGAATTGCCGACACAGAACCACTACGATGTTCCAAGGAGTATTATGATGCAGGCATCAGTAACAAGCGAtaatgaggaagaggaggaggacacCAGCTACTACATGGACATGGAAAAAGTGAAGAGGGTTGTGAGTGAGGTGGACAAGGAAGATGAATTGACCCGTCAAGCACAgAGGAAAATTTCAAATCGCAGATCACCTATGTCTTTAAGCGCCATTCTCTGTAATGGACAAGCTGACAAGAGTCATGGTACAGGAGATTTATCCGAATCCAGACTACCTGGAGGAGATGAAGGCCCTGAGGATGCATTCCTGAACAGTGGTTCCACTGGTTGGAGCAGACAGATTCTGCAGGGGAGTGAAACAGACAACGCTGAGAAGAAGGATATTTGTGTGAACCAGGAGGAGCTAAGGAACAATGCGATCTTCACAGAAGAAGCAGGAAAACCTTGTGTGTCTGACTGGAAACATGATGAATCTTCTGGTCCATTCCATGAGGGGGATCAAATCGTGGCCATTAATGATTTGCTCACAGACAGTCTGGAGGAGGTACATACTTATCTGCGGAGGCTTAGCAAAGATGAGGTAAAACTAACTATCCTGAGACAGCCAGGCTCTCGACCTTTGAGTGGATGCAGTTTGTAGAGCATATTCTGACTCTATAGCACCTGCCTCCACAATGTATTGCTCATTGCTGTTAGTATAAAGATGTATTATATATGTAGGGTCTGGTGCAGTGCTTGATAATGAGCagtgctgctgtttaaaaatgaaatgttattatCTTGTCTCTTTTGTTTTGGGTTACTACTGCATAGCACGGATCCCTCTAGTGGTTTTTGCTTGAATTACAATGTGAAGATAAACTGCTTATATGCACACTAAATATGCACTTTGTGATAAAATCTTCTTATCagcataaaaatgtttaatcttGTAATACGCACTGAATTACTAAATGCACTTACAGGAAAAGCAtgttaaatagcctaaatgtttgtaatatttgattgcactgtatatattgtattataataaataactatattCAACAATACCTACTATGACATAAGCCTTCAGTGTGTATCAGCAAATAAAGATTTCTGTACTGTAA
>XM_022668963.1
CAAATTTAATTTCCCTTTATTTGCCCTGTGTTCCAGTTTCTGCTGGAAGGTCCTGTATGGATAAGGTTTGGATAACAGCTCTTAAACATGCATGCTGGGAAAGACATTCACCCAGGGGATGGACTTCTTGTCAAGACTACTTCCAAAACACCTGAAGCCCTGCCTCTTGTTGATGTCACCAGAGCCGTTTCCAATGTCGTCTAATCCAGCTACTCCCCGATGGATTCCAGTGGGTCGAAATTCCCTGTTTTATGAGCAGCCAAAAGATGATGTGGAGGAGgtgcagtcaggctacctctttAAATCACCACCTAAGTCTCTCCTCACTAAATCCATGAAATCATGGAAGCGGAGGTACTTTGTTCTCACTATGATCAACGGGCACCTCCACGAGCTGAAGTACTACAGGGATGAAAACAAGAAAGACAAACCCTTAGGAGAAATTGACCTaacCTCTTTGCTTTTCCTGCAACCGGAAACACACCCTACTTGGGAATGGATTCAGAAGAATTTCAGATGCTCTTCATCTTGTGTTCTGTTCATGAGGGTGCTAGAGAGAGACTATTTCCTCATTGGAGAAAACAGTTCTGAGATGGACAGCTGGTTCAATGCCATATTTGCAGCTCTcaagacacacacactgatcagcCCGGAGGAACACAGAAAGACCAGGTCAATATCGGAGCCCAATGATGTACAAACATCCTATAATGATCAAGAACTTGACACTGAAAATGAAGAACAGCCGATCCAGAGAAAATCTCCTGCATTAAGACGCTCTGCCCCTGAATTGCCGACACAGAACCACTACGATGTTCCAAGGAGTATTATGATGCAGGCATCAGTAACAAGCGAtaatgaggaagaggaggaggacacCAGCTACTACATGGACATGGAAAAAGTGAAGAGGGTTGTGAGTGAGGTGGACAAGGAAGATGAATTGACCCGTCAAGCACAgAGGAAAATTTCAAATCGCAGATCACCTATGTCTTTAAGCGCCATTCTCTGTAATGGACAAGCTGACAAGAGTCATGGTACAGGAGATTTATCCGAATCCAGACTACCTGGAGGAGATGAAGGCCCTGAGGATGCATTCCTGAACAGTGGTTCCACTGGTTGGAGCAGACAGATTCTGCAGGGGAGTGAAACAGACAACGCTGAGAAGAAGGATATTTGTGTGAACCAGGAGGAGCTAAGGAACAATGCGATCTTCACAGAAGAAGCAGGAAAACCTTGTGTGTCTGACTGGAAACATGATGAATCTTCTGGTCCATTCCATGAGGGGGATCAAATCGTGGCCATTAATGATTTGCTCACAGACAGTCTGGAGGAGGTACATACTTATCTGCGGAGGCTTAGCAAAGATGAGGTAAAACTAACTATCCTGAGACAGCCAGGCTCTCGACCTTTGAGTGGATGCAGTTTGTAGAGCATATTCTGACTCTATAGCACCTGCCTCCACAATGTATTGCTCATTGCTGTTAGTATAAAGATGTATTATATATGTAGGGTCTGGTGCAGTGCTTGATAATGAGCagtgctgctgtttaaaaatgaaatgttattatCTTGTCTCTTTTGTTTTGGGTTACTACTGCATAGCACGGATCCCTCTAGTGGTTTTTGCTTGAATTACAATGTGAAGATAAACTGCTTATATGCACACTAAATATGCACTTTGTGATAAAATCTTCTTATCagcataaaaatgtttaatcttGTAATACGCACTGAATTACTAAATGCACTTACAGGAAAAGCAtgttaaatagcctaaatgtttgtaatatttgattgcactgtatatattgtattataataaataactatattCAACAATACCTACTATGACATAAGCCTTCAGTGTGTATCAGCAAATAAAGATTTCTGTACTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259255.3 False 1810 mRNA 0.42 15 5831007 5841843
XM_022668962.1 True 1909 mRNA 0.42 16 5829634 5841843
XM_022668963.1 False 1901 mRNA 0.42 16 5829636 5841843

Neighbor

gene id symbol gene type direction distance location
LOC107197901 NA coding upstream 1625 5824388 ~ 5828009 (+)
casp7 casp7 coding upstream 9637 5807162 ~ 5819997 (+)
LOC103045303 NA coding upstream 57757 5765856 ~ 5771877 (+)
LOC107197899 NA coding upstream 64752 5758072 ~ 5764882 (+)
cpn1 cpn1,LOC107722209,LOC107684044,LOC107702463 coding upstream 145471 5669067 ~ 5684163 (+)
nhlrc2 nhlrc2 coding downstream 11064 5852907 ~ 5875214 (+)
adrb1 adrb1 coding downstream 45201 5887044 ~ 5891991 (+)
tdrd1 NA coding downstream 62263 5904106 ~ 5948629 (+)
vwa2 vwa2 coding downstream 107701 5949544 ~ 5981217 (+)
LOC111192358 LOC108426481 coding downstream 158163 6000006 ~ 6002530 (+)
G34602 NA non-coding upstream 35816 5788758 ~ 5793818 (+)
G34615 NA non-coding upstream 87190 5739614 ~ 5742444 (+)
G34606 NA non-coding upstream 169732 5659266 ~ 5659902 (+)
G34605 NA non-coding upstream 170435 5658969 ~ 5659199 (+)
G34587 vti1a,LOC107566351,LOC107702459 non-coding upstream 257953 5400955 ~ 5571681 (+)
G34636 dclre1a non-coding downstream 3059 5844902 ~ 5847925 (+)
G34644 ccdc186,LOC107755417,LOC107566113 non-coding downstream 72398 5914241 ~ 5916402 (+)
G34657 NA non-coding downstream 124845 5966688 ~ 5967194 (+)
G34790 NA non-coding downstream 201003 6042846 ~ 6043340 (+)
G34841 tmem235 non-coding downstream 416710 6258553 ~ 6258814 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other upstream 73518 5692522 ~ 5756116 (+)
LOC103025551 sema4g other upstream 904868 4882556 ~ 4924766 (+)
G34309 NA other upstream 1651551 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 2170502 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 3772671 2050742 ~ 2056963 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 404803 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 660302 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 750764 6592607 ~ 6663607 (+)
G34931 NA other downstream 889111 6730954 ~ 6731424 (+)
G35021 NA other downstream 1060574 6902417 ~ 6903997 (+)

Expression


Co-expression Network