dclre1a


Basic Information

Item Value
gene id dclre1a
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5842978 ~ 5852808 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259256.3
GTATGTAACAGGACTCATGTTTACAGTAGTAGAGGGatatttaactaaataaacGAGTTATAAATGAATCTGCCAAACGATAACAATGTTTTAATTgaaatgtgtgtctgtttgtgtttaaCGTTATGTTTAGCTGTTTAAAACTGTAGCTAGGCTAATGGTAGAGCTGCTGTTATTGGTGGCTGCTGGTGTGAAATGTCACAGAGTAACTCAGAAAGTGATATCTGGGAATATAAACCTCTTAAAAAGaccaaaagacaaaataataagTCACAAAAATGCAGCGAGTCCGCAGCAAAGAGACAGAGGGTGAACAAGCAAGGGAAGgcaaagaaacagacagaagaTCAAAATGCCAAAAACAAGGGCTGTAATGGATCTTCCACCAGGAATCACCTGCCCGAGGAATCTGTACAGAACACCAGTATAAACGGATCACTGACCACAGACCCTGAAACACAGGCTGCTGCTTCTCCTGAGGGTGATACAGAAAGCCAGGGGTACTGTCCAATCTGTCAAATGCCtttttctatcttggtggtCCAGTCTGAACGGTGGCATGTTGCTGAGTGCTTGGATACCCCTGGAGAAACTAGTAAAGAATGCCCATTTGGTCTTCAGTGCTCTTCGTCCATTCCAAATCATTACAAGAGATACTGCCACTCTCTTTTAGCTCATAGTCGAGCAATAAACAGCCCAGACTCAAGACTAGCCCCCTCAGACCAATCACATCTGGAGCAGACATTGTATGTCAGTGATGCCATCATCTCTAGAAAAGAGAGCTCGGTGGACAGTGCGGTGAATCTCTCTTCAGTGTCCAGCCAGAGTGCCTCTCCTAGTCATGGATCCAAGCAATCTTGTACACCTGTTGGTCAACCCAATGCGTTAATGCGGCTAAGGTCCCCAGACCCTgaggatattaaaaaaaagaaaggttgGTCCCCCTCTGCCAAAGTATCAAGATCCCAGTGTTCATCTCAGGAACCTAAAATTAGGAGTTCCACTCCTGTTAAAGCAGAAGGCATCTGCTGTGCTGTTCAGACGGTTGAAGTAAAAGAGGAACCCTCTgctttaaacaacaaaaatgatgataatgatgattataTTTCCTACTCTCCCCTTTCTGAGCTCCCTGCTGAAACAGATGTTATCTGTAGTAAGAAAAAACTGTTTCAGAGTACTGCAGTAAAAGAAGCGGATAGCGATGATGATAATGACTCACTGATGCTGTTTGATGAGACTGTGAGTGAGGATGGTCTACTCTCTGATGTCTTGGAGCAGTTTGAGAGAAGCCAAGAAGATTCTCTCAGTACGGAGGCTCCGCCTGTGACCACCTGTGATCAATTAGAGTCCTTAGACCCAATTGAAGATGTTGCTGATGAAGCATTTGGGTCTCATTCCAGTGTTAAACACTCGCAATACAAACAGTTGGTAAAAGACAGTGAAGGTAAAGGGAGCAAGTCTCAGTTACAGTCTCCTGGAAGTTTAGTGTTGGAGCGCCTTCGTGATCATTTATCTAACCCTGCAGATTTCAACAGTCTTGACTCTACATGTGCAGAAATAGACTCTGTTTCTGAAATGCCTTCCACCATGCTCACCACCAAAAACCAGTCTCTCTCCACCATTACTCCCAGTAAAACCCAGAACAAGGTCTCTGGGTTAAAGCAAACTGATATTGGTGTGTTCTTTGGATTGAAGCCACTGAGTAAGAAGGCTGAAGAGAAGGTTAATTCAGTGAAGGAAGAGGTGAGCTCTACTCCTAGAAAGAGCTCTGGACCTGCAGGACGGAATACTAAACGTCAGGGTAGACAGCGCGGGAAGAGTGCTGCAGTCCACGAAGAGTCCACAGCAACGGAGGCAGTCGAGGAAGGAGCTGCTCAGCCCACGCAAACAGAAGGAGGCAGAGGAGTGAGGGCAGGGGGGAGGAAGAGGTGGAACAGAGGAAGAGCGACAGATGGAGGACCAGTGGAGCCCAGGCGATGCCCGTTCTACAAGAAAATCCCTGGAACTGGCTTTGTAGTCGATGCGTTTCAGTATGGAACCATTGAGGGCATTACAGCATACTTTCTTACACACTTCCACTCTGATCACTATGGAGGACTCACAAAAAGGTCCACACTTCCCATCTACTGCAATAAAATAACTGGTAACCTGGTGAAGAGTAAGCTGAAAGTGGATGAGCAATATGTCCACATTCTTCCAATGAACACGGAGTGTGTGGTGGATGGTGTAAAGGTCACCCTTTTGGATGCTAATCACTGTCCAGGGGCAGCTATGTTGCTGTTTCTGCTGCCAGATGGCCAGACCGTGCTCCACACAGGTGACTTCCGGGCTGATCCCTCTATGGAGCGCTACCCAGAGCTGCAGGGCTTCAGGGTTCAGACGTTGTATCTGGATACCACGTACTGCAGTCCAGAATATGCCTTTCCCACTCAGCAGGAGGTGATAACTTTTGCTGCTAACACAGCCTTCGAGCTGGTCACACTCAACCCTCGGACGCTGGTGGTGTGTGGCACTTACGCTGTGGGGAAAGAGAAGGTTTTCTTGGCCATATCTGATGTGCTGGCTTCTAAGGTGTACATGTCTAGGGATAGGTATAACACCATGTGCTGTCTGGAGTCCAAGCAGATTTGCCAGTGTATCACCACAGATCCGAAGGCAGCTCGGGTCCACGTTCTCCCCATGATGCAACTCAATTTCAAGAATTTAGAGGCACACTTGCATAAACATTCACAATCATATGATCAACTGGTGGCTTTCAAGCCCACAGGCTGGACCTTCACTCACTCAGGGGATGTGACAAACATACAACCTGAAGTCAAAAACAACATCAGTATTTATGGCGTTCCGTACAGTGAGCACAGCAGCTTCCTGGAGCTGAAGCGGTTTGTGCAGTGGCTGCAGCCTCTGAAGATCATTCCCACAGTGAATGTAggcagctggagcagcaggaagGTCATGCAGCAGTGCTTCAGCGAGTGGCAGACTGAGGCCAAAGCCCTGAACACAGTTCCTCGGAAAGGCTGCCGGAGCTCCTACACAAGGCAGTAAGGGGCCTCATCATAAAAGTCCAGCCTTTGACCAGGTAGTCAAACGCTGGCTTTAGGACCTGATGCAAGTATAGCTGGACATACTTGTGCTCGTGTTATAAAGGACCTTTCCTCTCATTTAGAAAGATGCACAGGAAGACCCAGAACCACGTTTTATAcagattttaatactgttttttttttttttataaagaagatTTTACAGTGTTGCACAGTTATTTACTAGTGAAAACCTGCTTTTACACGTCACGCCCAATTCATAGACAAGTGACTAAAGCAGTTTGGATAaaagataataaagtaatattgtATTGTCAGTCTGAGGTGGACTGTTGTCTTAATATTGATCACTCCATAACACTAATGACTTTGAACTattgtgcgcgtgtgtgtgtgtgtgtgtgtgagagaaagaaatattCTGATTGTTACAAAATATGTaattgaaataaatacatttaagctaA

Function

NR:

description
DNA cross-link repair 1A protein

GO: NA

KEGG:

id description
K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259256.3 True 3517 mRNA 0.45 9 5842978 5852808

Neighbor

gene id symbol gene type direction distance location
LOC103041412 LOC103041412,LOC108426492 coding downstream 20547 5818722 ~ 5822431 (-)
nrap nrap,LOC107755535 coding downstream 39856 5771619 ~ 5803122 (-)
tectb tectb,LOC107755437,LOC107566341,LOC107702437,LOC107722201 coding downstream 155819 5600368 ~ 5687159 (-)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding downstream 246540 5579330 ~ 5596438 (-)
vti1a vti1a,LOC107566351,LOC107702459 coding downstream 271344 5400928 ~ 5571634 (-)
LOC103043680 NA coding upstream 75753 5928561 ~ 5934694 (-)
afap1l2 afap1l2 coding upstream 128181 5980989 ~ 6038592 (-)
pgs1 pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 coding upstream 300886 6153694 ~ 6178101 (-)
tmem235 tmem235 coding upstream 403596 6256404 ~ 6266677 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding upstream 415593 6268401 ~ 6270943 (-)
G34719 cpn1,LOC107722209,LOC107684044 non-coding downstream 161039 5677418 ~ 5681939 (-)
G34713 NA non-coding downstream 183074 5659024 ~ 5659904 (-)
G34708 NA non-coding downstream 197873 5644906 ~ 5645105 (-)
G34688 zdhhc6,LOC107684040,LOC107722226,LOC107581631 non-coding downstream 268220 5573473 ~ 5574758 (-)
G34682 NA non-coding downstream 451658 5391095 ~ 5391320 (-)
G34760 nhlrc2 non-coding upstream 9649 5862457 ~ 5867932 (-)
G34765 adrb1 non-coding upstream 34230 5887038 ~ 5891991 (-)
G34769 NA non-coding upstream 74881 5927689 ~ 6012669 (-)
G34791 NA non-coding upstream 190117 6042925 ~ 6043439 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding upstream 296422 6149230 ~ 6152861 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 480492 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 847065 4971698 ~ 4995913 (-)
G34214 NA other downstream 1959509 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 2053786 3783125 ~ 3789192 (-)
G34046 NA other downstream 2648601 3181168 ~ 3194377 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 50780 5903588 ~ 5928154 (-)
G34770 NA other upstream 83027 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 196193 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 513876 6366684 ~ 6513701 (-)
G34953 NA other upstream 684213 6537021 ~ 6541364 (-)

Expression


Co-expression Network