nhlrc2 (nhlrc2)


Basic Information

Item Value
gene id nhlrc2
gene name nhlrc2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5852907 ~ 5875214 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259257.3
TGCGTGTGTGGCTTAGCTCTATGCTGCATGTGAGCGTaggagtttatatatatatatatataaatatgattatgTGACTAGCTGTGGTTATTTTAGTTGTCATTATGTCGAATGTGCTGATCGCGTCCCCCGCGCAGTTCTCCTCTCTGTTCTCCGCGGTGCTCGGAAACATGGCGGCCTACAGCAGCCTGTCGACTCTGTTCCCGGTTCAGAGCGAGCTGGAGAGCGGCCTGGAGGAGGCGAGCGGCCCGCGGGAGAGGGAGGAGCTGGTGGCGGAGTATCTGAAAAAACTGGACCACAAGGAAGACCTGAAAGTTCCAGATTTTGAGGAAGGACTAGACTGGCTGAACACAGAGGGTCCTCTGTCTCTGCAAAAGGAGTTGGCAGGGAAAGTGGTGGTCCTGGACTTCTTTACCTATTGCTGCATCAACTGCATGCACTTACTGCCTGACCTGCACCAACTGGAGCAACGTCACACTGTTAAAGATGGCCTGGTCGTGGTCGGTGTTCACTCAGCCAAGTTCCCCAATGAAAAGGTTCTACAGAACATTTGCTCTGCAGTGCTAAGGTACAGCATCACGCACCCTGTAGTGAATGATAGTGATGCGCGGCTATGGCAGGAGTTGGAGGTGGCTTGCTGGCCCACCTTGGTGATCCTGGGCCCCAGAGGAATGCTGTTTTCTGTGGTGGGTGAAGAACACAGAGACAGGCTTTTCCTGTTTACCTCCGTCGCTCTAAAGCACTATGGAGAGCAAGGCCTTCTGAGGGACCATGCTGTGGGATTGAAGCTCTTCAGAGACTCCTTACCTCCTTCCATCCTCTCCTTCCCTGGAAAGGTAGCAGTGGATCCCTTCAGCAAGAAGCTGGCCATTGCGGATACAGGACACCATAGGATTTTGGTGGTCTCCAGTACTGGAAAAGTTCTTTACTGTATAGGAGgtTCTGGAAGTGGCTGGAAGGATGGGAACTTGTCTGAGGCACTGTTCAATTCTCCTCAAGGAGTATTCATAAAGGGAGACACTGTGTTTGTGGCCGACACAGAGAACCATCTGATCAGgaggATTGACCTTTCAGAGGGAAGAGTCACTACTTTAGCTGGTACTGGACTCCAAGGCACAGACAAGGAGGGTGGGGCAATGGGGccgcagcagccaatcagctccCCCTGGGATGTAGCCCTCGGCACTACAGGTGGTGTAGAGGATAACGTGTTGTGGATCGCCATGGCAGGGACTCATCAAATCTGGGCTGTGTTCCTGGAGGATGGGAAGCTGCCCAAAGGAAGTGAGTACGGGAAGGGAGTGTGTGTGCGGTTTGCAGGCAGTGGGAATGAGGAGAACAGGAATAATTCGTACCCTCATAAGGCTGGTCTGGCTCAGCCCTCAGCTCTGGCTCTTGTCCCCATCCAGCCCTGGAACTGCCTGTTCATCGCAGACAGTGAGAGCAGCACCATCCGCAGCGTGTCCCTGAGCGACGGGGCAGTCAAGCACGTGGTGGGAGGCGAGAGGGACCCCTTGAATCTTTTTGCGTTTGGAGATGTGGATGGTAAAGGTATAGACGCTAAGCTCCAGCACCCATTGGGAGTGGCCTGGGATGCCAGCAGCAGCCTTCTTTATGTGGCCGACTCGTACAACCACAAGATCAAAGTAGTGGACCCTAAGACTAAGCAGTGCAGGGTGCTGGCAGGCACTGGGGAAGCGAGCGATGTGTTTGGCCCGAGCTTTACAGAATCCAGCTTCAACGAGCCTGGCGGCTTGTGTGTGGCTGAGGGGGGCAAGTTGCTTTATGTAGCAGACACCAACAACCATCACATCAAAGTGCTGGACCTCGAGACCAAAACTGTCTCCCTGTTCCCGATTTCAATTGAGGAAGTGGATGCCTCTACTGCTACAGTTAGAAAGGTTCCCAAGATTCCCAAGCTTCCAAAGTCCGCCCCTGTCCTCAGTGTGGCTGCGCTGCCTGTGTCTGCAGGACAGGCCATCCGAATGCACCTCAACCTTACTTTACCTGCAGGCACCAAACTAACCGAAGAAGCACCAAGCTTCTGGAGTCTGTCTGCTGAAGGTCATGAGTGGTTACTGGAAGGACAAGCTGTTACAGGTGACATTGCTGATCTGTCCCAGCCACTATCCATCACCTGCTCCGTCCCAGCTCAGGCTGTGTCCTCAgaccccacactgaccctcagCGCCTGGGTCTACTGCTGCCTCTCAGATGGAGGAGCGTGTATGATGAAGGCAGTGTCCTTTGTGCAGCCTCTGCTTATAGACTCTGAAGCCAAGGGTGATAATGTAGCTGTGACTCTAGCACATGCTTTCTAAACCGTGCAGTTACTGTTAAATACACTGCAATGGTGTTTACCCAACCCTGGTCTTAGGATACAGTAGCTGTGAATGTTTGGGTGTTTTCTAAGTTTAAAACGGGCCAATATCATCACTTTCATGGGGGAGGGGTTTTATTCTCCAAAATGGCGACTTACAGTTGAAGCAGctctttgtagttctataattacaggaCTATAGTCCTGTATCTACATTCTtaattatcctcctttcaccctgttctgcAATGGACATGAtagaaccaccacagagcaggtattatttgggtgattgat

Function

symbol description
nhlrc2 Orthologous to human NHLRC2 (NHL repeat containing 2).

NR:

description
NHL repeat-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259257.3 True 2617 mRNA 0.52 12 5852907 5875214

Neighbor

gene id symbol gene type direction distance location
plekhs1 NA coding upstream 11064 5829634 ~ 5841843 (+)
LOC107197901 NA coding upstream 24898 5824388 ~ 5828009 (+)
casp7 casp7 coding upstream 32910 5807162 ~ 5819997 (+)
LOC103045303 NA coding upstream 81030 5765856 ~ 5771877 (+)
LOC107197899 NA coding upstream 88025 5758072 ~ 5764882 (+)
adrb1 adrb1 coding downstream 11830 5887044 ~ 5891991 (+)
tdrd1 NA coding downstream 28892 5904106 ~ 5948629 (+)
vwa2 vwa2 coding downstream 74330 5949544 ~ 5981217 (+)
LOC111192358 LOC108426481 coding downstream 124792 6000006 ~ 6002530 (+)
trub1 trub1,LOC107755443,LOC107702428 coding downstream 274073 6149287 ~ 6152869 (+)
G34636 dclre1a non-coding upstream 4982 5844902 ~ 5847925 (+)
G34602 NA non-coding upstream 59089 5788758 ~ 5793818 (+)
G34615 NA non-coding upstream 110463 5739614 ~ 5742444 (+)
G34606 NA non-coding upstream 193005 5659266 ~ 5659902 (+)
G34605 NA non-coding upstream 193708 5658969 ~ 5659199 (+)
G34644 ccdc186,LOC107755417,LOC107566113 non-coding downstream 39027 5914241 ~ 5916402 (+)
G34657 NA non-coding downstream 91474 5966688 ~ 5967194 (+)
G34790 NA non-coding downstream 167632 6042846 ~ 6043340 (+)
G34841 tmem235 non-coding downstream 383339 6258553 ~ 6258814 (+)
G34842 NA non-coding downstream 391095 6266309 ~ 6266668 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other upstream 96791 5692522 ~ 5756116 (+)
LOC103025551 sema4g other upstream 928141 4882556 ~ 4924766 (+)
G34309 NA other upstream 1674824 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 2193775 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 3795944 2050742 ~ 2056963 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 371432 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 626931 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 717393 6592607 ~ 6663607 (+)
G34931 NA other downstream 855740 6730954 ~ 6731424 (+)
G35021 NA other downstream 1027203 6902417 ~ 6903997 (+)

Expression


Co-expression Network