pgs1 (pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408)


Basic Information

Item Value
gene id pgs1
gene name pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6153694 ~ 6178101 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259271.3
GAAGAGTGCTAGGGAAAGATGGCGGCCCCCATGACCTGGAGGAGACTTGTGTACTCTGTGTACACACCGGCTCTGTCCGGGGTTTTCAGCAGAATCTCGGACCGGTTATTCAGGACGCAAGACAGGAGGAGAGGGTCCTCTCTGCTTCTCCTGGCTCCTCTCCTGGCAGAGACTGACACCACACCTGCCTCCTCAAGGCCTCCAGGCTCTACAGGAGCTGCAGGACTACACTCCCGCTTCCACTGGATCGCTGAACATGTGCCGGCCTTCAGGGTGCCCGGGGGCCGCATTCACATCCTTCACTCTCCGGATGAGTTCTATCAGGCGATGAAGgCACGTATCAAGACTGCCAAGCGACGAGTGGTGATGGCGTCCTTGTATCTCGGCACAGGACCACTGGAGCAAGATCTTGTGAATTGTATGGAAGAGGCTCTTGAGCGCTCTCAGGAAGACACTGCTGCTAATTTGAAAGTCTCTATACTGCTAGACTACACCAGAGGATCTAGAGgAAAGAACAATTCTCGCACCATGCTGTTGCCTTTGCTGCAGCGTTTCCCAGAGCAGATGAGAGTATGCCTGTATCACACTCCAGACCTGCGTGGGTTGCTGCGCCTTTTAGTCCCTGAGCGCTTCAATGAGACCATTGGCGTGCAGCATATCAAAGTTTATCTTTTTGATGACAGTCTGATCATCAGTGGGGCAAATCTCAGCGATTCATACTTCACTAACCGGCAGGATCGTTACGTGCTGTTGGAGGGTTGCAGAGAGGTTGCAGATTTCTTCGCTGAGCTCGTGCGAGCTGTGAGTGATGTCTCATTACAGCTTGAGTCGGATGACAGCGTCCACACAAAGGAGGGAATGGTACATCCTTACAAAGGTAATCGCACAGACTTCTCAACCTCAGCACAAAAGCAGATCATGGAGGTGATTAACACAGCCAGGGTCCAGCAGAACCTACAGGATTTAGAACATTCACAAGATTCAGACCTGGAGCTGGAATCTGGAGAGGAGCGCAGCGACACCTGGGTCTTCCCCCTCGTCCAGATGAAGCCTTTGGGCATTCGGCTGGATGAGGAGGTAACACAGAGACTGCTGTGGGAGGCGGGTGGAGACTCCACAGTCTACTTGACCTCAGGTTACTTTAATCTGACGCGAACCTACATGAGACTAGTGCTGGGAGCTGCGGCAGATTACCGCATCCTCATGGCCTCACCAGAGGTCAACGGATTCTTCGGGGCCAAAGGGGTGGCAGGGGCCATTCCTGAAGCATACATTCACATTGCAGGCCAGTTCTACAGACAGgtgtGTGATCTAGGTCAGCAGAGTCGCATCCACCTACAGGAGTATCATCGGCCTGACTGGACTTTCCATGCCAAAGGACTGTGGTACTACCTGCAAGGAAACAGTCGTCCCTGCCTTACTCTTATTGGCTCTCCCAATTTTGGTTACCGCTCTGTGCACAGGGACATAGAGGCTCAGATTGCTATTGTGACTGAGAATGAGGAGCTCCAGGCCAACCTGCAGCAGGAGCAGGAAATGTTGTACAAGAGGTCCACAGAAGTGTCAAGCTCCACTTTCAAGCAGCCCGACCGTCATGTTAAGTTATGGGTGAAGTTGGTCACTCCTTTCATTAAGAACTTCTTCTGAGGAGCTACGTGTCTGAGTTTCTGAACTTCTTACAATCCATTCAAGttttcagGTTAAAACTCCAGATGAAGATTGGCCCTTGCATGCAGTTCTTGTACAGAGCACCCGTATACATTCTTGGTCTCCTGACGTTCCACTGGGATAGCTTTGATGAAGAAGATGACTGCCATAGCAGGTGTCGAGACCTTTAGATAAGCATCAGCAGTTGCACTGGCTTGGGTGtcccattgagcttctgtgaaAATGTTAATTCAGCATTTCACTTTATTGCCACCGTGTTTTATACCAAAGAGCGCACAGTCCAGGATCCAGTCCAGAGAGGCTGCAGCACCGTCACCTTGCTCTACCAGGTAGGGCAGGGTAAACACTGAGGCTTTGTTCAGACTGCatgcttaaatcagatttttggcatatctagattgtatccaggtGGTAGTGATAGAAGTGAGGGGGACCAAGAAGAGCCCCAAGAGGTCAGATGTTAATTACTAAAGCTGACCTTGTTACCATAGCAACCTCTGCAGAGGCATTTGTGATGTCCAGACATGCAAATCCGATCTGATCACTTGCAAATAACAGAGCAGACAGCCACTtcaacagatctgatttggGAAATGAATCTGATTTGCATGCAGCCTGAATGTAGACTGTGATGTGTTCAGGCATTTCAGGACTGGGTTTGGATTATTCTGGCTTTACAGAAATGATGGCACTCCACTGTGTGTCAAAGTTGtaatcaaacacaaacacaagtgTTGTCTGTAATTCAGCATGTCTTTGGCAGTGTGAGTGAAGAGAACTTCACTCAAAATTTTATAGAATATTCctttaatgcaaaaataaaggaaaatatttGTGAAATAATAAGTGATGTGAGAAATGAAGGCTCTGTTGAGCTGCcccaattatttgttttttttttacttgtttttatagACATTTGGTTGCTATCTGTTTAATATACCAGAGATCAGCAGTGTCTCGGTCTGTATGTATATCTTGCAAACATGAGAACTGAGAACTGTGCAATTTTGTTCAATTCTCAAGTTACTATATCCAGAAAAGAGCCACTGCGTTCTGATATAATCCTCTGTTCCACAAGATGAGAAACTTTGTGAAGCCAAAAGTGAATTATTCTAGAGGGCCTTAGCAAAcgtttattcttttattcagtGACAGGGTTCTGCCTTCCACTCCTGAAGGCCTAAACTGTGGaacaaaaatacaggaatttaACCATTAATATTAACAGAAAGGTGACACTGTACCATGTTCATGACTAAGCTGTGTTTTCTAAGTGTGTAAAGAATCATTTCACTAGCAGTTtacaatgtttaaatattttgtattattattattattattatttgcattatttaaaaaacttctgtatttaacatttgcctgtttgtttaaaaactggAACCAGTACAAGATCTGTTTTAAATCTCATTTCATTTAGCTTTTTATGTGTTGAAAGAGCTGTTAATGTTAAGATGAATAATAAGATGAATGTGTGTTTGGAAGGAGACCAATATGTACGATACAGAAGTGCCGGTGAGTCGGGGTTTGAATTGATACTATAGTCAGTCTATAGTAGGTGGTTTAATGTTCTACTTGAAGCCTTGTTTTAGGCCAACTGGTCAAAGATCACGAGCCTTGAAAGACAGATGTGTCCTTCTCCATGTAGTATAAGAATAATATGTActcatttttctgtgttttttattgtgttgtgaAGGCAACGTTTTTGACAGAAAATAAAGCTTTAAGTGTTATATGATGGA
>XM_022669009.1
GAAGAGTGCTAGGGAAAGATGGCGGCCCCCATGACCTGGAGGAGACTTGTGTACTCTGTGTACACACCGGCTCTGTCCGGGGTTTTCAGCAGAATCTCGGACCGGTTATTCAGGACGCAAGACAGGAGGAGAGGGTCCTCTCTGCTTCTCCTGGCTCCTCTCCTGGCAGAGACTGACACCACACCTGCCTCCTCAAGGCCTCCAGGCTCTACAGGAGCTGCAGGACTACACTCCCGCTTCCACTGGATCGCTGAACATGTGCCGGCCTTCAGGGTGCCCGGGGGCCGCATTCACATCCTTCACTCTCCGGATGAGTTCTATCAGGCGATGAAGGTGAATTGTATGGAAGAGGCTCTTGAGCGCTCTCAGGAAGACACTGCTGCTAATTTGAAAGTCTCTATACTGCTAGACTACACCAGAGGATCTAGAGgAAAGAACAATTCTCGCACCATGCTGTTGCCTTTGCTGCAGCGTTTCCCAGAGCAGATGAGAGTATGCCTGTATCACACTCCAGACCTGCGTGGGTTGCTGCGCCTTTTAGTCCCTGAGCGCTTCAATGAGACCATTGGCGTGCAGCATATCAAAGTTTATCTTTTTGATGACAGTCTGATCATCAGTGGGGCAAATCTCAGCGATTCATACTTCACTAACCGGCAGGATCGTTACGTGCTGTTGGAGGGTTGCAGAGAGGTTGCAGATTTCTTCGCTGAGCTCGTGCGAGCTGTGAGTGATGTCTCATTACAGCTTGAGTCGGATGACAGCGTCCACACAAAGGAGGGAATGGTACATCCTTACAAAGGTAATCGCACAGACTTCTCAACCTCAGCACAAAAGCAGATCATGGAGGTGATTAACACAGCCAGGGTCCAGCAGAACCTACAGGATTTAGAACATTCACAAGATTCAGACCTGGAGCTGGAATCTGGAGAGGAGCGCAGCGACACCTGGGTCTTCCCCCTCGTCCAGATGAAGCCTTTGGGCATTCGGCTGGATGAGGAGGTAACACAGAGACTGCTGTGGGAGGCGGGTGGAGACTCCACAGTCTACTTGACCTCAGGTTACTTTAATCTGACGCGAACCTACATGAGACTAGTGCTGGGAGCTGCGGCAGATTACCGCATCCTCATGGCCTCACCAGAGGTCAACGGATTCTTCGGGGCCAAAGGGGTGGCAGGGGCCATTCCTGAAGCATACATTCACATTGCAGGCCAGTTCTACAGACAGgtgtGTGATCTAGGTCAGCAGAGTCGCATCCACCTACAGGAGTATCATCGGCCTGACTGGACTTTCCATGCCAAAGGACTGTGGTACTACCTGCAAGGAAACAGTCGTCCCTGCCTTACTCTTATTGGCTCTCCCAATTTTGGTTACCGCTCTGTGCACAGGGACATAGAGGCTCAGATTGCTATTGTGACTGAGAATGAGGAGCTCCAGGCCAACCTGCAGCAGGAGCAGGAAATGTTGTACAAGAGGTCCACAGAAGTGTCAAGCTCCACTTTCAAGCAGCCCGACCGTCATGTTAAGTTATGGGTGAAGTTGGTCACTCCTTTCATTAAGAACTTCTTCTGAGGAGCTACGTGTCTGAGTTTCTGAACTTCTTACAATCCATTCAAGttttcagGTTAAAACTCCAGATGAAGATTGGCCCTTGCATGCAGTTCTTGTACAGAGCACCCGTATACATTCTTGGTCTCCTGACGTTCCACTGGGATAGCTTTGATGAAGAAGATGACTGCCATAGCAGGTGTCGAGACCTTTAGATAAGCATCAGCAGTTGCACTGGCTTGGGTGtcccattgagcttctgtgaaAATGTTAATTCAGCATTTCACTTTATTGCCACCGTGTTTTATACCAAAGAGCGCACAGTCCAGGATCCAGTCCAGAGAGGCTGCAGCACCGTCACCTTGCTCTACCAGGTAGGGCAGGGTAAACACTGAGGCTTTGTTCAGACTGCatgcttaaatcagatttttggcatatctagattgtatccaggtGGTAGTGATAGAAGTGAGGGGGACCAAGAAGAGCCCCAAGAGGTCAGATGTTAATTACTAAAGCTGACCTTGTTACCATAGCAACCTCTGCAGAGGCATTTGTGATGTCCAGACATGCAAATCCGATCTGATCACTTGCAAATAACAGAGCAGACAGCCACTtcaacagatctgatttggGAAATGAATCTGATTTGCATGCAGCCTGAATGTAGACTGTGATGTGTTCAGGCATTTCAGGACTGGGTTTGGATTATTCTGGCTTTACAGAAATGATGGCACTCCACTGTGTGTCAAAGTTGtaatcaaacacaaacacaagtgTTGTCTGTAATTCAGCATGTCTTTGGCAGTGTGAGTGAAGAGAACTTCACTCAAAATTTTATAGAATATTCctttaatgcaaaaataaaggaaaatatttGTGAAATAATAAGTGATGTGAGAAATGAAGGCTCTGTTGAGCTGCcccaattatttgttttttttttacttgtttttatagACATTTGGTTGCTATCTGTTTAATATACCAGAGATCAGCAGTGTCTCGGTCTGTATGTATATCTTGCAAACATGAGAACTGAGAACTGTGCAATTTTGTTCAATTCTCAAGTTACTATATCCAGAAAAGAGCCACTGCGTTCTGATATAATCCTCTGTTCCACAAGATGAGAAACTTTGTGAAGCCAAAAGTGAATTATTCTAGAGGGCCTTAGCAAAcgtttattcttttattcagtGACAGGGTTCTGCCTTCCACTCCTGAAGGCCTAAACTGTGGaacaaaaatacaggaatttaACCATTAATATTAACAGAAAGGTGACACTGTACCATGTTCATGACTAAGCTGTGTTTTCTAAGTGTGTAAAGAATCATTTCACTAGCAGTTtacaatgtttaaatattttgtattattattattattattatttgcattatttaaaaaacttctgtatttaacatttgcctgtttgtttaaaaactggAACCAGTACAAGATCTGTTTTAAATCTCATTTCATTTAGCTTTTTATGTGTTGAAAGAGCTGTTAATGTTAAGATGAATAATAAGATGAATGTGTGTTTGGAAGGAGACCAATATGTACGATACAGAAGTGCCGGTGAGTCGGGGTTTGAATTGATACTATAGTCAGTCTATAGTAGGTGGTTTAATGTTCTACTTGAAGCCTTGTTTTAGGCCAACTGGTCAAAGATCACGAGCCTTGAAAGACAGATGTGTCCTTCTCCATGTAGTATAAGAATAATATGTActcatttttctgtgttttttattgtgttgtgaAGGCAACGTTTTTGACAGAAAATAAAGCTTTAAGTGTTATATGATGGA
>XM_022669010.1
GAAGAGTGCTAGGGAAAGATGGCGGCCCCCATGACCTGGAGGAGACTTGTGTACTCTGTGTACACACCGGCTCTGTCCGGGGTTTTCAGCAGAATCTCGGACCGGTTATTCAGGACGCAAGACAGGAGGAGAGGGTCCTCTCTGCTTCTCCTGGCTCCTCTCCTGGCAGAGACTGACACCACACCTGCCTCCTCAAGGCCTCCAGGCTCTACAGGAGCTGCAGGACTACACTCCCGCTTCCACTGGATCGCTGAACATGTGCCGGCCTTCAGGGTGCCCGGGGGCCGCATTCACATCCTTCACTCTCCGGATGAGTTCTATCAGGCGATGAAGgCACGTATCAAGACTGCCAAGCGACGAGTGGTGATGGCGTCCTTGTATCTCGGCACAGGACCACTGGAGCAAGATCTTGTGAATTGTATGGAAGAGGCTCTTGAGCGCTCTCAGGAAGACACTGCTGCTAATTTGAAAGTCTCTATACTGCTAGACTACACCAGAGGATCTAGAGgAAAGAACAATTCTCGCACCATGCTGTTGCCTTTGCTGCAGCGTTTCCCAGAGCAGATGAGAGTATGCCTGTATCACACTCCAGACCTGCGTGGGTTGCTGCGCCTTTTAGTCCCTGAGCGCTTCAATGAGACCATTGGCGTGCAGCATATCAAAGTTTATCTTTTTGATGACAGTCTGATCATCAGTGGGGCAAATCTCAGCGATTCATACTTCACTAACCGGCAGGATCGTTACGTGCTGTTGGAGGGTTGCAGAGAGGTTGCAGATTTCTTCGCTGAGCTCGTGCGAGCTGTGAGTGATGTCTCATTACAGCTTGAGTCGGATGACAGCGTCCACACAAAGGAGGGAATGGTACATCCTTACAAAGGTAATCGCACAGACTTCTCAACCTCAGCACAAAAGCAGATCATGGAGGTGATTAACACAGCCAGGGTCCAGCAGAACCTACAGGATTTAGAACATTCACAAGATTCAGACCTGGAGCTGGAATCTGGAGAGGAGCGCAGCGACACCTGGGTCTTCCCCCTCGTCCAGATGAAGCCTTTGGGCATTCGGCTGGATGAGGAGGTAACACAGAGACTGCTGTGGGAGGCGGGTGGAGACTCCACAGTCTACTTGACCTCAGGTTACTTTAATCTGACGCGAACCTACATGAGACTAGTGCTGGGAGCTGCGGCAGATTACCGCATCCTCATGGCCTCACCAGAGGTCAACGGATTCTTCGGGGCCAAAGGGGTGGCAGGGGCCATTCCTGAAGCATACATTCACATTGCAGGCCAGTTCTACAGACAGgtgtGTGATCTAGGTCAGCAGAGTCGCATCCACCTACAGGAGTATCATCGGCCTGACTGGACTTTCCATGCCAAAGGAGCAGGAAATGTTGTACAAGAGGTCCACAGAAGTGTCAAGCTCCACTTTCAAGCAGCCCGACCGTCATGTTAAGTTATGGGTGAAGTTGGTCACTCCTTTCATTAAGAACTTCTTCTGAGGAGCTACGTGTCTGAGTTTCTGAACTTCTTACAATCCA

Function

symbol description
pgs1 Predicted to enable ATP binding activity and CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity. Predicted to act upstream of or within cardiolipin biosynthetic process. Predicted to be located in mitochondrion.

NR:

description
PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial

GO: NA

KEGG:

id description
K00995 pgsA, PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259271.3 True 3434 mRNA 0.45 11 6153694 6178101
XM_022669009.1 False 3356 mRNA 0.45 10 6153694 6178101
XM_022669010.1 False 1537 mRNA 0.52 9 6157497 6178101

Neighbor

gene id symbol gene type direction distance location
afap1l2 afap1l2 coding downstream 115102 5980989 ~ 6038592 (-)
LOC103043680 NA coding downstream 219000 5928561 ~ 5934694 (-)
dclre1a NA coding downstream 300886 5842978 ~ 5852808 (-)
LOC103041412 LOC103041412,LOC108426492 coding downstream 331263 5818722 ~ 5822431 (-)
nrap nrap,LOC107755535 coding downstream 350572 5771619 ~ 5803122 (-)
tmem235 tmem235 coding upstream 78303 6256404 ~ 6266677 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding upstream 90300 6268401 ~ 6270943 (-)
LOC103025956 fscn2,LOC107684083,LOC107722237,LOC107581600 coding upstream 95770 6273871 ~ 6287633 (-)
LOC103027554 NA coding upstream 375232 6553333 ~ 6558835 (-)
bicral gltscr1l coding upstream 389288 6567389 ~ 6578059 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding downstream 833 6149230 ~ 6152861 (-)
G34791 NA non-coding downstream 110255 6042925 ~ 6043439 (-)
G34769 NA non-coding downstream 141025 5927689 ~ 6012669 (-)
G34765 adrb1 non-coding downstream 261703 5887038 ~ 5891991 (-)
G34760 nhlrc2 non-coding downstream 285762 5862457 ~ 5867932 (-)
G34939 NA non-coding upstream 181810 6359911 ~ 6360378 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding upstream 497478 6675579 ~ 6679954 (-)
G34988 NA non-coding upstream 502250 6680351 ~ 6680909 (-)
G34997 NA non-coding upstream 550760 6728861 ~ 6729154 (-)
G34998 NA non-coding upstream 552841 6730942 ~ 6731499 (-)
ablim1 ablim1 other downstream 6383 6049001 ~ 6147311 (-)
G34770 NA other downstream 214294 5935835 ~ 5939400 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other downstream 225540 5903588 ~ 5928154 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 791208 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 1157781 4971698 ~ 4995913 (-)
LOC103026268 bahcc1 other upstream 188583 6366684 ~ 6513701 (-)
G34953 NA other upstream 358920 6537021 ~ 6541364 (-)
ndufaf8 NA other upstream 365043 6543144 ~ 6546582 (-)
G34981 qki2,LOC103029551,LOC108426533 other upstream 441579 6619680 ~ 6653585 (-)
LOC103030829 NA other upstream 510066 6688167 ~ 6696291 (-)

Expression


Co-expression Network