tmem235 (tmem235)


Basic Information

Item Value
gene id tmem235
gene name tmem235
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6256404 ~ 6266677 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259293.3
GTAGATGTGAGCGTGCCCGTGTTGTTCAGTCAGTGCAGTAATAATGGTGTAAAAGCGCGAGGTCTGATTTATTCACGGCACTGCGTGCTTTAGGctggagctgtgtgtgtttgtgtgtgtgtgtgtttgagctgcTGGAGGAAGTTTGCTGTGCGGCTCGCTTTGCGTCGTTCTGCTTTAGtaacagagaagagagaagagactCGGCTCGATATGAAAGTTGGGTTCGGGTCTGTGGTGATCAGCGCTGGAGTTACTGGGATCCTCAGCTTCTGCTTTCTGGCGCTCGCAATAGGAACCGAGTACTGGTATATTATAGAGGACAAGCGCTCAAACCACACAGACAACAACCACCTGCATTCTGGACTGTGGGGCGTCAGTGATGATGTACAGCCCTTTTCAGAGCCCCCTCCCAGCCTTTCAGACTCGGAAATACACATGCAGAACATGCATAATGTGATTGCCATTCTGCTGCCTCTGAGTCTGGTGCTGTTAGTGTTTGGAGGAATATGTGGTCTGGTCAGCTCTCTGGCCCGGAGTAGAGCTCTCCTCATGGGTGCTGCctcctattttctcctctgCAgtcttcTTACACTCTCTGGTGTAAGTCTGTACATCACGTATTCCCAGCAGGCTCTGGAGATGACAGAGAGGAGGATGGGGCCGGAGCAGATGGCTCTGGTTCACACGTCGTTCGGCTGGTCAATGGGCATGGCCTGGCTGTCCTTTATTCTGGAAGTGATAACAGGTTTTCTCCTGCTGATTTCTGCCAGGATGGCCCAATTAATCCAGTACCAGGAGACTGTGGCCCCCATATAGGAGACATATTTCTCCAGTTCAAAGCACTGTTATTATATGAGGtaatttctctgtgtgtgtttgccaaGTTAAAAAGTGCACGTACTTGTGTTAGCACACATTGTACATTATTTCTTTTACtaagtaagtactttttaaacgCAATACCAGTTATTCTATATGAGGTAATGTTTGTCCTGAATATTGATCAAATGTATAATGTCTGTTATTATtacctaattatttttttattatgggaGAGAGCAGTCTTTAAGACTGATGGTCGTAAACAAATCTCTATTCACTGACAGTATTATTTTTGCTGCACTTTGCTCGTTTGTTTAAATAGAGGTCAGATAAGAAGGATTTAAATACAGTTTGGCATCtattaaaggtttaaaataatttaaataatgagaGTGAACTTCCTAAAAGAGAGTGACATACACTTAACCTCAAAAACCGTTGTCTTTTTATTGGGAAAAACCAAACCAGAGCTGTAAAAATAGACCAGTTCCATACATTTGTGAAGAAATTACAAGGTTTAAGTTGGGGTGTAAACCTGTACCTGAGCAATTTTTGTTCCAATCAAATCACATACatattatttatactttaaagaacaatttgaaaTGCATTCTATTTTCTCCTTAATACTGAATTTCAATAGTTTCAATTTTTAAAGACAACTGGGATTAAATTTTTACTAGCAATAATCTAAAAAGTCACATAcataatttctttttaaatgcatgGTTACACATCCTCTTGATTTTGTGACAGTGATCCAGTGAGGTAAGAATTTCATCAGTCTCTTCAGTTTCAATTCATTGTAGGCCACTTCTCCAGTAACTGCGTGCTTTGTGTTTAAGTAATatataacacacaaaaaatgctTTCTTCAGTTGACAAATGTGAGTTCTTGGAATATACTTGGAATACATTATACAATGTCCATTTTTTTATggataagagaaaaagagaaaagcttATACGGTGTTCAACACTGTGTCTAGGTGCATCCTTTTCTGTCCATGTTCCACAAAGGACCTTGACCTAGAGCTTTCCTCGCTAATGAGAACTTGTGTGGAAGAGGAAATTAAGTGCAGAAAAAGGAGCAGAACGTATATGGATGAACTGAAAGAGTGGACATTTGAGATATTATGCTGTGAAGTGTCTTGCCTCATTTACAGAGCACAGAAGGTGAAAAACATCAGATTCTATGTGAAGGTTCCATTGCACAAAATCGTAccgtactttttttttttttatgtctaaaTTCATACTCTGTGAGAGGGCCTACTCAATCTAACCAGTACAGTGACATTATTCTGTTATCAAAAATCAAGTTTCAAGTCTGTTCAGAAAAgagttagcattgcagctaatccactaTTCTAGGCTTTTTAATAGGAGCCCTCAGGCCAGATAGTATTAATTAAAAGACAACAAATAATAAAGGGCATGTAGGTACTTTTATGTTAATTGGACTTTTAtaagtaaattttaattaaaatattggcaaatatttaatttttgataATACTTACTTCTTAGTAACCTATAggatattttataaattctttatttttagacGAATAAAGAAACATCAGACTATCAAAAAACTGGCCTTGGATACAACGAGGTTcacattatttacagaatctgtcactacctgatgttcattacaggaGCTGCCATCAATTCACTGCATTCAAGCCGAGCTATACGCTACAGTCGGTggctttatactgtttatatagaCATCGGGATTATATCATATTGAACTTAATTAAGAAATATAGTCCAGCACTATTGAGGAGCTAATTATGTACCTGGGTACTCATTGCTATAATACACCAGGTGAGCTTTAAACATGTATGAAGTAATTGTGACAAGCTATTTTTAGAGCACTGACATTAACATGTGTTGAGAATTAAAGGGTATGTTGTTGCCATGGGCAACTATTGATGTGACCATCAATGTTAACACAAATGCAAGGTTTATGTCAGGggataaattagaaataaaaccaAATATACAATCCAATAACTTCAATGGGCTATTTGTACACAAAATATCATTAACTCAGATTCACTGCAATGTTGTAAAGCAGATACGAGCCCTCAGGATCTGAGGGATCTGAGTTATGTGCTGTGACTAACACACAGTTCTGGCCTCCTCTGGAGTTGCAGCACA

Function

symbol description
tmem235 Predicted to be located in cytoplasm. Predicted to be active in apical plasma membrane.

NR:

description
PREDICTED: transmembrane protein 235

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259293.3 True 2997 mRNA 0.38 4 6256404 6266677

Neighbor

gene id symbol gene type direction distance location
pgs1 pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 coding downstream 78303 6153694 ~ 6178101 (-)
afap1l2 afap1l2 coding downstream 217812 5980989 ~ 6038592 (-)
LOC103043680 NA coding downstream 321710 5928561 ~ 5934694 (-)
dclre1a NA coding downstream 403596 5842978 ~ 5852808 (-)
LOC103041412 LOC103041412,LOC108426492 coding downstream 433973 5818722 ~ 5822431 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding upstream 1724 6268401 ~ 6270943 (-)
LOC103025956 fscn2,LOC107684083,LOC107722237,LOC107581600 coding upstream 7194 6273871 ~ 6287633 (-)
LOC103027554 NA coding upstream 286656 6553333 ~ 6558835 (-)
bicral gltscr1l coding upstream 300712 6567389 ~ 6578059 (-)
LOC103045903 LOC108426443 coding upstream 438391 6705068 ~ 6711220 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding downstream 103543 6149230 ~ 6152861 (-)
G34791 NA non-coding downstream 212965 6042925 ~ 6043439 (-)
G34769 NA non-coding downstream 243735 5927689 ~ 6012669 (-)
G34765 adrb1 non-coding downstream 364413 5887038 ~ 5891991 (-)
G34760 nhlrc2 non-coding downstream 388472 5862457 ~ 5867932 (-)
G34939 NA non-coding upstream 93234 6359911 ~ 6360378 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding upstream 408902 6675579 ~ 6679954 (-)
G34988 NA non-coding upstream 413674 6680351 ~ 6680909 (-)
G34997 NA non-coding upstream 462184 6728861 ~ 6729154 (-)
G34998 NA non-coding upstream 464265 6730942 ~ 6731499 (-)
ablim1 ablim1 other downstream 109093 6049001 ~ 6147311 (-)
G34770 NA other downstream 317004 5935835 ~ 5939400 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other downstream 328250 5903588 ~ 5928154 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 893918 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 1260491 4971698 ~ 4995913 (-)
LOC103026268 bahcc1 other upstream 100007 6366684 ~ 6513701 (-)
G34953 NA other upstream 270344 6537021 ~ 6541364 (-)
ndufaf8 NA other upstream 276467 6543144 ~ 6546582 (-)
G34981 qki2,LOC103029551,LOC108426533 other upstream 353003 6619680 ~ 6653585 (-)
LOC103030829 NA other upstream 421490 6688167 ~ 6696291 (-)

Expression


Co-expression Network