LOC103025956 (fscn2,LOC107684083,LOC107722237,LOC107581600)


Basic Information

Item Value
gene id LOC103025956
gene name fscn2,LOC107684083,LOC107722237,LOC107581600
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6273871 ~ 6287633 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259296.3
TTCTGTAAACACACATATGTGTAGAACCCCCTGCAAAGATGAACCACAGAGCTTGGAATCAGAGAAGCTATGTAACTTTATACCAAGCGTGTTCTGGAAAACTGATCCCTTAGTCAGGCCACTGTCGCTGGGGGAGGGCTCTTGTTACCCAGCTTTGTGTCCCAACGCCATCAGCAAAGAGCTGAAGACTGGGGCAGTGGATAAAGACACAGCGACCACAGAAAGGGTGGATTACAGGGCCTCAGAAAAGGGTTTATGGAATAAGACCAGCAAGGAAGAGGAAAAAGgctgaaaaaatacaaatcaaggaaaaagaggaaaagaaaaagctgGTGCGTAGTGCATGTTTTGCTGCAAGTTTTATTGCATTGTGCAGATGCACTATCAGTGCTAGATAGCATTTGTGCTAGTAACGGCCTTAATTAAATGGCCATCCTTCTGGGAACAGAGCATGTCTAAGTCTTGCTAAGGGCCTGCCTTTGGAGATCTTGTAGAGCACCCGTTTCCGTTCAGCGATGTCCCTGTTTAAAGGACCCACCAATCAAACTCAAGCCCAATCAGGTGGAAAACTAAGATATGAATGAAGGAACAGCACtgagaagaggaaaaagaggcACAGAAATTAATCAACTAGACAGGAAAGAAGAGACAAGAGGAGCAGCAAGAGGGGAGTCACGCTGTGCTGCTCGGCCTTGGACAGCATCACTTTAGGAGATCAGTTTTTTGGTAATCCCACAGGTAGCCActggaaagacagacagacacagaccaGACTAAGATTGGTGAGGTGAAACGAGCAATAGAACATAGAGCAATAGGAGCACGGGAGTAGGAAAAAGGGGAGTGAGAAAAGCAGGGAAGAGAAAGAACCGGTGGGATCAAGGTGACGTCAACAGCTCACTGGATTGAGGTGTTGAGTCCTGCTGATTTTAATCTGAGCTGATTaggaaacagaagaaaaaactcAGAGCCTCAGCAAGCTGTCTGGGGAGCAAGACAAGAGAAGTCTTTTTTTACTTAGAGAAGAGGCCAAGGACCTgaagaaaacactgaaagaagACCGACAAATCCAAGAACCAAACTAATAAGAAAAGGCAGATATTTATCAGAAGatttacaagaaaaaaagagacaccAGGCAAGTAAATCAGGAAGCTTGTTGTTTTTTGAAAACTTCATCCTTTGTGGGAAATATATCGCTTCTGTTAATCAGTTTCATATCTGCTCCTGCAATCTTCTCCTGCATTCACCTGAGTGGACGACAATGCCCACAAATGGCAATAAAGCCCTCAAGCTCCAATTTGGGCTGATTAACTTTGAGAGCCGTTACTTAACTGCAGAGGCATTTGGGTTCAAAGTGAACGCTTCAGCACCAAGTCTCAAGAAAAAGCAGATCTGGACACTTGAGCAAGATGAGAAAGATGGGCAGGTCGTGTACCTGCGGAGCCACTTGGGCCGCTACCTGGCATCTGATAAAGATGGCAAGGTGAGTTGCGAGGCTGAGTCACAAGAGAGCGACTGCAGGTTCCTAATTGTCGCACAGTCAGACGGTCGCTGGGCCCTGCAGTCCGAGCCACATCTGCGCTTTTTTGGAGGGTCAAAAGACTATCTGTCCTGCTTTGCTCAGACCATTGGTGAAGCAGAGCTGTGGGCCATGCACCTGGCCCTGCACCCACAAGCAAACTTGCTAAGCGTAGCTCGCAAGCGCTATGCCCACCTGTCTGCACCTGAGGGTGAGATAGCTGTGGACAGCAACATCCCGTGGGGCGTCGATGCTCTCCTAACCCTGGTTTACGTAGATGGCAAATACTGCCTAAAGACCTGTGACAGCCGGTTTCTAAGCAGTGATGGGAAGCTGTCTTTTGAAAATGGTCGCGGAACAGGATATACCCTGGAACTGAAATCTGGTAAATTAGCTTTCAAGGACTGTGAAGGAAAGTACTTGAGCCCCATGGGGCCAACAGGCACCTTACGTTCAGGACGCTGCTCCAAACCAGGCAAGGATGAGTTGTTTGATCTGGAAGAAAGCCATCCACAGGTGGTGTTTCAGGCCGCCAATAACAGATTTGTCTCAATCCGACAAGGCGTGAGTGTCTCAGCGAATCAGGAGGATGAAACAGACATGGAGACATTTCAAATGGAGATCGATAAAGACAGCAAAAAATGTAAGTTCAGGACAAATGAAGGCAACTACTGGACGCTTGTAGCTCACGGAGGCATTCAGTCGACAGCCAGAGAAGCAGGCGCCAACACCATGTTTGACATCGTGTGGCTCGGACGGAGGGTGGCGCTACGAGCTAACAATGGGAAATATGTGTGCACTAAGAAGAATGGACAGCTCGCTGCAGTCAGCGACTCAGTAGGGGAGGATGAGCAAATGATTCTAAAGCTGATCAACAGGCCCATCCTAATCCTACGAGGGGAGAACGGATACGTGTGCCACCACAAGAATTCAAACACACTGGACGCCAATCGCTCAGTTTATGACATCTTCACATTAGGCTTCAGTGACGGAGCATATCATATTaaagGTGCAGGAGGAAGGTTCTGGTATGTTTCCAGCAGTGGCATGGTGTGCTCTGATGGCGACACACCTGAAGATTTCTGCTTTGAGTTCTTAGAACATGGGCGAATTGCAATAAGGGGCAAGAATGGCAAGTATCTGCGCGGAGACCAAGGGGGCACACTGAAAAGTGATGGAGAGAATGCTGATGGCTCATCTCTCTGGGAATATTGACACCTAGTGGCCATCTTGGATACTGTCATTCTCTTGCCACCTGAAACTTTTGGACTTGCTATGGAAGCAGTGGAGGATGCAgtatgtgtgaatgtgcatGTTTGGAAACTGAGCAATTTTGtgggtaaataataaaatcaattttCAGTCA

Function

symbol description
fscn2 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly; cell migration; and establishment or maintenance of cell polarity. Predicted to act upstream of or within eye photoreceptor cell development. Predicted to be located in stereocilium. Predicted to be active in actin cytoskeleton and cytoplasm. Implicated in retinitis pigmentosa and retinitis pigmentosa 30.

NR:

description
fascin-2

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K17455 FSCN2; fascin2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259296.3 True 2888 mRNA 0.47 5 6273871 6287633

Neighbor

gene id symbol gene type direction distance location
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding downstream 2928 6268401 ~ 6270943 (-)
tmem235 tmem235 coding downstream 7194 6256404 ~ 6266677 (-)
pgs1 pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 coding downstream 95770 6153694 ~ 6178101 (-)
afap1l2 afap1l2 coding downstream 235279 5980989 ~ 6038592 (-)
LOC103043680 NA coding downstream 339177 5928561 ~ 5934694 (-)
LOC103027554 NA coding upstream 265700 6553333 ~ 6558835 (-)
bicral gltscr1l coding upstream 279756 6567389 ~ 6578059 (-)
LOC103045903 LOC108426443 coding upstream 417435 6705068 ~ 6711220 (-)
LOC103031455 si:ch73-127m5.2,LOC108426537,LOC107749848,LOC107561855,LOC107684095,LOC108274350,LOC107601426 coding upstream 423681 6711314 ~ 6715739 (-)
LOC103032713 camk2g1,camk2g,LOC108410509,LOC108273829,LOC107561852,LOC107684098,LOC107690933 coding upstream 599076 6886709 ~ 6993101 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding downstream 121010 6149230 ~ 6152861 (-)
G34791 NA non-coding downstream 230432 6042925 ~ 6043439 (-)
G34769 NA non-coding downstream 261202 5927689 ~ 6012669 (-)
G34765 adrb1 non-coding downstream 381880 5887038 ~ 5891991 (-)
G34760 nhlrc2 non-coding downstream 405939 5862457 ~ 5867932 (-)
G34939 NA non-coding upstream 72278 6359911 ~ 6360378 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding upstream 387946 6675579 ~ 6679954 (-)
G34988 NA non-coding upstream 392718 6680351 ~ 6680909 (-)
G34997 NA non-coding upstream 441228 6728861 ~ 6729154 (-)
G34998 NA non-coding upstream 443309 6730942 ~ 6731499 (-)
ablim1 ablim1 other downstream 126560 6049001 ~ 6147311 (-)
G34770 NA other downstream 334471 5935835 ~ 5939400 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other downstream 345717 5903588 ~ 5928154 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 911385 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 1277958 4971698 ~ 4995913 (-)
LOC103026268 bahcc1 other upstream 79051 6366684 ~ 6513701 (-)
G34953 NA other upstream 249388 6537021 ~ 6541364 (-)
ndufaf8 NA other upstream 255511 6543144 ~ 6546582 (-)
G34981 qki2,LOC103029551,LOC108426533 other upstream 332047 6619680 ~ 6653585 (-)
LOC103030829 NA other upstream 400534 6688167 ~ 6696291 (-)

Expression


Co-expression Network