LOC103031150 (LOC108426536)


Basic Information

Item Value
gene id LOC103031150
gene name LOC108426536
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6698639 ~ 6704998 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259314.3
ttaaaaagacCAACCTTATCTTGTATTTGTATCCAGACTGGCCTGAAATGTGGTTTAAGAACATGTGCATTCATTTGGGATAGAATGTGGTGTTGATTAACCAGACTAAGGGGCTTCGGGAACATTGGGGTGATTAAGTGGAGGCTGCAAACTTCTCCACTGAGACAGACGGCTGGGAAGCAAACCTGTGGGAGTAGCAGAAGAATGGGACAAATCAAGACATATAACCACTAGGAGGTGGCTTTGGCCATACATGGCTGATAACTTGGTAGCTTTGGCCAGCGGTCTGTCTGCTGTGCTTCTGTTTCTTTTGCTAATTGTTCTGACAGTCTATCTGTTGTGGAAGAAGAGGCAGGACCAGAGACAATACCAACAACTGATCAGCACTAACCCCACTATTCCTCCATGCACTACTGTTCTCCAAACTTCACACTCCAGCAGCTATGGCTTGGCTGAAGTCCCCTTTTTTCTGCCACCAAGCTTCAAGAGATTAGCCCACGTTGAAGAGAATAAAGGGAGGGAGGAAGAAGAGCAATGGGAGCACCAGCCGCAGCTTCACAACCAGCGAGGGTCTCTGACTATAGGCAGCTGGTTTCCTCTGGGCAGCCTGAGGCCTGACCTGTACCGGCTGCCCGAGGAGCCCAGTGAGTGGGCAGAGCCGGGGGGCTCCAGCATGCGGCTGTGTTTCGCTGTGCAGTACTGTCAGGAGAAGGAGCAGCTGGTGGTCACTCTGCTCCGAGCTGCTAACCTGCCTGCCCACTGCCAGGCCTGCACCACACTGATCAAACTGCAGCTCCTGCCATCTGAAGACCGGCGCCAGCGGCAGGCCAAGGCCCGGGGCAAAGGCTGCCAGCCGCAGTTCAACGACAGCTTTGTGTTTCAGGTGTCTAATATCAGTGTGGGCCAGTGTACACTGAGCatgagtgtgtacagtgtggaCCGTCTGAAGAAGCACCACACAGTGGGCCGGGTTCTCTTCCCTCTCAGACTGTCTGATCTCAGAGAGGCAGCAGGAAAAGTGCTGTGGAGGGACCTGGAGACTGAAAGTGATTTGGCCCTGTCAAAGCATGGCGATATCCAAGTGTCTTTAAACTACAACCAGTCCCTACAGCGCCTCACTGTGGTCGTTCTTAGAGCTCGAGGACTCCAGTGTTCCAGCAATGCTGGTGTTTGTGTCCAGGTCTCTCTGCAGATACACACTCAGGTAGTGAAGACAAAGTGGACTTCAGTAGCCAAAGGCAGTGAGCCCATCTTTAACGAGAAACTGACCTTTAGGCTTCATCCTCGGCAGCTAGATACAACCTGTCTGAGCCTGGAGGTCCAGCAGCCTGCCACAGAGGAGCCCTCTGAATGCCAACCAACTCCCAGAACCACAGCACCAATGTCACTGGGGGTAGTGGTCATTGGGCCATTCATGTATGCCAGAGGCAGGGAGCTGGAACACTGGACCGAAATGGTGAGCAAGTCACATGAGCTGGTGAAGCAGTGGCACGGCCTGGGAGCAGCTAATGCCATTCACAGTCCAACCTGAACCACACAGTTCACGCACACAATGACCACAGAATCTTTATTCACAAATCTACTATTTCTAAAAGAGGACAATGCTTCCTATTCTTCATTATCTGCACAAGATACACTTTACACGTTTTATATAAGGCAGTTATATGGTGGTTATAAGGTGGTTAACCAACTAATTCCGTGATTGAggtatgtttttaaaaactgccttttatatacataaaaaaggcTTTTAAGAAATGAACAGACATAACATCTTTATTatgacattcattcatttagataCATTAACCTCTAGGGTAGAATTAACTAAGAGttgtataattgtattttttttttatttctttaattgtgctTCACATTGATAAAATAggacaaaaacaaataattgtGGCAATGTCTTGTCATACCATGTatataaaacagtttattaaaagttgCATTA
>XM_022669020.1
GAGGAAGAAGAGCAATGGGAGCACCAGCCGCAGCTTCACAACCAGCGAGGGTCTCTGACTATAGGCAtatatgCCAGAGTTTAGTCGGCTCAGCAGAACACTCTCTGTTCTTATTTGTCTCCCTCGCCCTGTGGATAATCACCTCTGGCTGAATGCTTCTGAAGGCTGGTTTCCTCTGGGCAGCCTGAGGCCTGACCTGTACCGGCTGCCCGAGGAGCCCAGTGAGTGGGCAGAGCCGGGGGGCTCCAGCATGCGGCTGTGTTTCGCTGTGCAGTACTGTCAGGAGAAGGAGCAGCTGGTGGTCACTCTGCTCCGAGCTGCTAACCTGCCTGCCCACTGCCAGGCCTGCACCACACTGATCAAACTGCAGCTCCTGCCATCTGAAGACCGGCGCCAGCGGCAGGCCAAGGCCCGGGGCAAAGGCTGCCAGCCGCAGTTCAACGACAGCTTTGTGTTTCAGGTGTCTAATATCAGTGTGGGCCAGTGTACACTGAGCatgagtgtgtacagtgtggaCCGTCTGAAGAAGCACCACACAGTGGGCCGGGTTCTCTTCCCTCTCAGACTGTCTGATCTCAGAGAGGCAGCAGGAAAAGTGCTGTGGAGGGACCTGGAGACTGAAAGTGATTTGGCCCTGTCAAAGCATGGCGATATCCAAGTGTCTTTAAACTACAACCAGTCCCTACAGCGCCTCACTGTGGTCGTTCTTAGAGCTCGAGGACTCCAGTGTTCCAGCAATGCTGGTGTTTGTGTCCAGGTCTCTCTGCAGATACACACTCAGGTAGTGAAGACAAAGTGGACTTCAGTAGCCAAAGGCAGTGAGCCCATCTTTAACGAGAAACTGACCTTTAGGCTTCATCCTCGGCAGCTAGATACAACCTGTCTGAGCCTGGAGGTCCAGCAGCCTGCCACAGAGGAGCCCTCTGAATGCCAACCAACTCCCAGAACCACAGCACCAATGTCACTGGGGGTAGTGGTCATTGGGCCATTCATGTATGCCAGAGGCAGGGAGCTGGAACACTGGACCGAAATGGTGAGCAAGTCACATGAGCTGGTGAAGCAGTGGCACGGCCTGGGAGCAGCTAATGCCATTCACAGTCCAACCTGAACCACACAGTTCACGCACACAATGACCACAGAATCTTTATTCACAAATCTACTATTTCTAAAAGAGGACAATGCTTCCTATTCTTCATTATCTGCACAAGATACACTTTACACGTTTTATATAAGGCAGTTATATGGTGGTTATAAGGTGGTTAACCAACTAATTCCGTGATTGAggtatgtttttaaaaactgccttttatatacataaaaaaggcTTTTAAGAAATGAACAGACATAACATCTTTATTatgacattcattcatttagataCATTAACCTCTAGGGTAGAATTAACTAAGAGttgtataattgtattttttttttatttctttaattgtgctTCACATTGATAAAATAggacaaaaacaaataattgtGGCAATGTCTTGTCATACCATGTatataaaacagtttattaaaagttgCATTA

Function

NR:

description
PREDICTED: synaptotagmin-15-like isoform X1

GO: NA

KEGG:

id description
K19914 SYT15; synaptotagmin-15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259314.3 True 1963 mRNA 0.48 8 6698639 6704998
XM_022669020.1 False 1540 mRNA 0.48 6 6700259 6704998

Neighbor

gene id symbol gene type direction distance location
LOC103030206 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 coding upstream 18618 6675542 ~ 6680021 (+)
prph2 prph2,prph2a,LOC107601435,LOC107581607,LOC107684088 coding upstream 110019 6583214 ~ 6588620 (+)
tbcc NA coding upstream 117380 6579898 ~ 6581259 (+)
LOC103028092 LOC108273792 coding upstream 131533 6560860 ~ 6567106 (+)
tepsin tepsin,LOC105892758 coding upstream 145421 6547550 ~ 6553218 (+)
LOC103046215 si:ch73-127m5.1,LOC108410513,LOC108273477,LOC107690930,LOC107755465,LOC107749846,LOC107684096,LOC105892755 coding downstream 28313 6733311 ~ 6776528 (+)
LOC103031986 ndst2b,LOC108410510,LOC108273828,LOC107755463,LOC107684097,LOC107749844 coding downstream 73204 6778202 ~ 6877033 (+)
LOC103033683 LOC108410508 coding downstream 316849 7021847 ~ 7028159 (+)
kctd2 kctd2,LOC108410512,LOC107666921,LOC107727321,LOC107582756 coding downstream 324133 7029131 ~ 7040685 (+)
slc16a5 NA coding downstream 338484 7043482 ~ 7056429 (+)
G34923 NA non-coding upstream 8500 6689792 ~ 6690139 (+)
G34916 NA non-coding upstream 28648 6669762 ~ 6669991 (+)
G34903 NA non-coding upstream 34656 6663657 ~ 6663983 (+)
LOC107197904 NA non-coding upstream 210211 6483624 ~ 6488428 (+)
LOC111192360 NA non-coding upstream 325889 6371928 ~ 6372750 (+)
G34930 NA non-coding downstream 13792 6718790 ~ 6719186 (+)
G35012 NA non-coding downstream 104230 6809228 ~ 6942271 (+)
G35016 LOC108410509 non-coding downstream 175485 6880483 ~ 6891804 (+)
G35017 NA non-coding downstream 187507 6892505 ~ 6897393 (+)
G35031 NA non-coding downstream 282834 6987832 ~ 7050629 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 35032 6592607 ~ 6663607 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other upstream 157179 6502145 ~ 6541460 (+)
LOC103045604 LOC108426437,LOC107683136 other upstream 440589 6246646 ~ 6258050 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other upstream 942523 5692522 ~ 5756116 (+)
LOC103025551 sema4g other upstream 1773873 4882556 ~ 4924766 (+)
G34931 NA other downstream 25956 6730954 ~ 6731424 (+)
G35021 NA other downstream 197419 6902417 ~ 6903997 (+)
fasn fasn other downstream 1681175 8386173 ~ 8438865 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other downstream 1737134 8442132 ~ 8472989 (+)
LOC103024481 adamts14,LOC103367006 other downstream 2014356 8719354 ~ 8851392 (+)

Expression


Co-expression Network