LOC103031455 (si:ch73-127m5.2,LOC108426537,LOC107749848,LOC107561855,LOC107684095,LOC108274350,LOC107601426)


Basic Information

Item Value
gene id LOC103031455
gene name si:ch73-127m5.2,LOC108426537,LOC107749848,LOC107561855,LOC107684095,LOC108274350,LOC107601426
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6711314 ~ 6715739 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259315.3
GAGAAAAGCTCGGCATGGCGACGGTGCCCTGTCTGCTGATTTGCAACCCGCCGAAGCGGCGTCGGGGAAGAAGGAGAGCTTCGCTCGGTTCGCCATGGACTGGTCCAGGATCAGTAGGGTTTAAACTCGACTCTAACCATAGAGCGTAACTGGGTTTGGTCGTCTTGTGAAGAAGCACCTTATTTTGGTGGTACTTTGAAACTTATCATCTAGTGAATGTTTTACACAAGAGCACAAAACAATTcaaacagaagtcaataatctcGAAAAAAGACTGTGAAAATGGATCCGTCTACTGGAATGCACATGTCCACAGTTCCGCCAAACAGTGATGTGGTTCATGTGGCTGGAATTGGGAATCCCATCATAACCATGTATCAAACTCCGCCTCAGGCTCCAAGCATTGCTCAGATCATTACACAGCAAGTCATTCCACAAGATGTCTCCTGTCAAGCTGTACCACATACAGTTCCTTCACAAGTCCAGATATCATCACAAGTCCAGGCTTCGATGCATGGACACGGACACGGTCATGGTCGTGGTCAGTCACAAAGCCACGGGCAGTCTCACAGTCTCGGGCAGTCTCACAGCCATGGCCAAATGCAAACCCATGTGCAAACGCAGAGCCTCGGGCAGCAGCAGAGCCACGGGCAGCAGCAGAGCCACGGGCAGCCACAGAGTCTTGGGCAACAGCAGAGCCTCGGGCAGCTGCAGAGCCTACAGCAAAGCCTTGGGCAAACACAAAGCCACACACAACCACAAAGCCATGGGCAACCACAAAGCCACAGTCAGCAACAAAGCCATGGTCCGTCACAAGTCCACGCTATAACACAAGGCACCTCAGAGACCCAAACTGTATCATCTTCTCAAGACGGGACCATTCCTAACCTGCAAGTTCCTTTTGCAGAGGTCGCCTCCCTTCTGGATCCTAACATGAAGAGCTCAAAGGCCCGGAAGTATCAAATCCGTTATGAGGAAGTTAAACGGAGGCTGGAGCCGCCTGAAAAGATGTCCCTCAGGTCTTTGGCTGCCTACACTCGAGTGAGTCGAGGCCCAGCCAGTAAAAAAACTCTCCTGGAATCGCTGAATGTTTTCGGCCTTTCGCCAAGCACCAACACGGCAGTGTCCAGCTCCTTCTCCAAACTCACTGAGGGTGACACAGCAGCACTGTGCAAAGACATGAAGGACTTTGCTTTACAGTATGTGGATTATGAAAATATCGCAAAGCAGTTACTGCCTGAGACGAACCAGGTGCAGCACTGGtcaaaaataattgaaacaaGGAACTACCTTGAAGAAATGCGTAAAGTTTTCAAAGACCCAGCGAACAGCCGTCTGTTTTCCAATGTCACACACGGCCTTGGCAATGGCATGATGGACGTAGCACTTGACATTATTGATGATGTCATTGACCGGCAAATCCGCATCCTCTCCGGAAACACAGATCCCAAGCCTGAACCACCGTCTCGGAGGATCCGAAAACGCATCCGCAAACCCAAAGCCGCTACAGAAGATGGCAAGCCGAAAGAGAAGGGCAaaagaggaaggaagaaaggCAAACAGATGCGGTTAGATCCTGCTGTACCACAGGTTCCACAGTCCACAGACATCGAGAGCAGTGTTCTGACGCTGGTATCTGTGGGGTACGAGACCATATCAAGTGGCCTCGGTGCTCCCAGTGCAGGCCTGGCATAGTCTTGAGTCTGAGGGATGCTGAGAGGGTGTGCATGCGGCGTACAGGTTCTTTATAGAGCacattttagttttgtattgtttCTTTTTCATGTAGAATCTCTTTTGGATATCTGAAACTGTGTTCTGGTTTTGAATCATAACAGCTGTAGATAATGAAGTCAGTCTTTAAACAGTTCATTTGATACGGAAAGGATTTATATGAACAAGAATGGTTCAATTGAAATAGGCCTTTTCATATCTTCCAttcatatttcttttattatttctgaGTGAAGAACAAACATACAGAACATAAATCACATAAAAGGACAGAACGTGTTTGTTCAATTCGGAACATGGTAATGAAGGTAAATCATAAAACCCTTGTCtaaaacatcatttaaatacaaaatgtaataGAATAGATGAACAATTAAATTTCAGTATGCCATATCGTGTATGTAGGATGAcagacttcttttttttattcaagttgcgaattatttatatattttccttgaATCTATACTTGTGTTGTACTGAACAACTAGTGAATACAACTGTAATCTGTATTTAGAAAAGTGCTTTGGattttttctgtgcattaaaaatgtacattttttaatga

Function

NR:

description
PREDICTED: transcription factor AP-2-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259315.3 True 2302 mRNA 0.46 4 6711314 6715739

Neighbor

gene id symbol gene type direction distance location
LOC103045903 LOC108426443 coding downstream 94 6705068 ~ 6711220 (-)
bicral gltscr1l coding downstream 133255 6567389 ~ 6578059 (-)
LOC103027554 NA coding downstream 152479 6553333 ~ 6558835 (-)
LOC103025956 fscn2,LOC107684083,LOC107722237,LOC107581600 coding downstream 423681 6273871 ~ 6287633 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding downstream 440371 6268401 ~ 6270943 (-)
LOC103032713 camk2g1,camk2g,LOC108410509,LOC108273829,LOC107561852,LOC107684098,LOC107690933 coding upstream 170970 6886709 ~ 6993101 (-)
sec24c sec24c coding upstream 286401 7002140 ~ 7020769 (-)
faap100 NA coding upstream 353470 7069209 ~ 7075841 (-)
chad chad,LOC107706882,LOC107675646,LOC107727306,LOC107552753,LOC107698804 coding upstream 381303 7097042 ~ 7104020 (-)
armc7 armc7,LOC107706878 coding upstream 397387 7113126 ~ 7115766 (-)
G34988 NA non-coding downstream 30405 6680351 ~ 6680909 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding downstream 31360 6675579 ~ 6679954 (-)
G34939 NA non-coding downstream 350936 6359911 ~ 6360378 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding downstream 558453 6149230 ~ 6152861 (-)
G34791 NA non-coding downstream 667875 6042925 ~ 6043439 (-)
G34997 NA non-coding upstream 13122 6728861 ~ 6729154 (-)
G34998 NA non-coding upstream 15203 6730942 ~ 6731499 (-)
G35069 NA non-coding upstream 245434 6961173 ~ 6961993 (-)
G35077 kctd2,LOC106589267,LOC107706864,LOC108410512 non-coding upstream 318991 7034730 ~ 7035818 (-)
G35078 NA non-coding upstream 320522 7036261 ~ 7040642 (-)
LOC103030829 NA other downstream 15023 6688167 ~ 6696291 (-)
G34981 qki2,LOC103029551,LOC108426533 other downstream 57729 6619680 ~ 6653585 (-)
ndufaf8 NA other downstream 164732 6543144 ~ 6546582 (-)
G34953 NA other downstream 169950 6537021 ~ 6541364 (-)
LOC103026268 bahcc1 other downstream 197613 6366684 ~ 6513701 (-)
G35429 NA other upstream 2209089 8924828 ~ 8927717 (-)
tbata NA other upstream 2223194 8938933 ~ 9003896 (-)
G35512 NA other upstream 2488831 9204570 ~ 9205911 (-)
rpl38 NA other upstream 2710336 9426075 ~ 9431228 (-)
clrn3 NA other upstream 4337920 11053659 ~ 11083182 (-)

Expression


Co-expression Network