chad (chad,LOC107706882,LOC107675646,LOC107727306,LOC107552753,LOC107698804)


Basic Information

Item Value
gene id chad
gene name chad,LOC107706882,LOC107675646,LOC107727306,LOC107552753,LOC107698804
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7097042 ~ 7104020 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259336.3
aaaacattttttcctcTACCATgagtaaatattataaatactgcTCCACTCACATGGCTGCCATTTCTCTCCAAAGGTCTTAAGTGAATCTTTTTGCACTGCCCTCTTTTCTCAGTCCCACACCCTCTCTCCTTCTCGCTCTTTAACTCACCTCTTGCTCTCTCCTTCAGCACTCACATTCTCTGTCTAGCTTTCTTCCTCTCACTACTCTTCATTCTCACTTCTCTTGAGGCTTTCTGTGGATTCTTGTCGCTGTCTGACAACTTTTCTGCTTGAAGACACTCAAGAAAACGGGCAGAAGAACAGACAGACGAAGAAGCACCAGAAGCTGTCAGAAACAGGGTCATTATGAAGGTTGGGAGATTCCAGTTGGTGTTCTGTATACATGTTTTTGCCTCGTTTGTAATAGGTATACAAAGCCAGTGCCCAAGTCCATGTCACTGTCATGGTGACCTTCAGCACGTTATCTGCGACAACGTTGGCCTGAAGAAGATTCCTCGCATCTCTGAAGCCACTCGTCTGCTCAACCTGCAGCGCAACAACCTGGGCATGCTCACCACTGGAGGCTTCAGCGACATGAAGGGGCTCATCTCCCTGCATCTCCAACACTGCCAAATCCGAGAGGTCGCCAGCCAGGCCTTTAAAGGTCTCAAGAAGCTCATTTACCTTTATCTGTCTAACAACGAAATCAGCACCATTAAATCTGGAGCTTTTGAGGACCTAAGTGAACTCACCTATCTTTACCTGGACGGAAATCGCATCTCAGGCCTTTCCAAGGGCATCTTTTCCCCAATGATTAACTTGTTCATTCTGCAGCTTGATAACAACAAAATTCGTGAACTGCAACCAGGCACCTTCACAGGTGCAAACGACCTCCGCTGGCTGCACATGAGTCACAACGAGCTGAGTGCAATGCAGCCCGGCTCACTTGATGAAGTGGAGAACTTGGCCATTCTTACCTTGGACCAAAACAAGCTTTCTACCTATCCCATCCAGGCCATGAGCAAGCTGCGTGTAGTTGAGGAGCTTAATTTGTCAAAGAACCCACTTAGCTTCATCCCTGATCACGCATTTCGGAGCTTCGGTCGCTACATGGAGAAGCTGCATCTCAATGATATGGGTCTAGAGAAGTTCTCCACTGCTGCTTTTGAAGGCGTGACTGCTCTAAAGTCTCTGCATCTTGAGAACAACAAGTTGAAGAATCTACCAAACAGTTTGGCCTTCACCAACATCCAGAATCTCACCCTGTTCAACAACCCATGGAGCTGCACCTGCCAGTTAGCAAACCTTAAAAAATGGATGGACTCCAGTCGTATTCACCCTGATGCAGTTTGTGCATCTCCTCCAAGTCAGAAAGGCAAACAGATAAAAGACACTTCTGCCTTCAGTCGgtgcaaagcaaagcaaaagaAGAGAGCCAAGAAGGGAACACGCCATTGAAAAGGAGACTCGGCGCAGACGCCCGTCCAGGTGACCGGCTATGTGTGCAGAGACGGGAAGCAATGCTACTTTCGACTTCAGGACTgtcctttttgttttcttcctaATTCTATGAAGTggcacacatatgcacacaagAAATGTATGAAACGCTCAATAAAATGAGAAGCAAAACAATGTGTTTGTAGGTACCATCAGCAGCAAACAGGAGCAGGAACTGTGTCAATTACGAAGTACAATGctacaatacagtatatacagttcATAAAACTATGTATTCCTCAGCTGTAATTATCATGAGGACATTAAGCTTTCTGCATCCTCCATTTAAACAGAAAGTCTGCATAAAATTAACACAATGATTCCTTACATTAAAGATTGCATCGTGttatacagaggttggacaatgaaactgaaacacctggtttaataccacaataatttattgtcccgacggacagttctagt

Function

symbol description
chad Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Is expressed in notochord. Orthologous to human CHAD (chondroadherin).

NR:

description
chondroadherin-like

GO: NA

KEGG:

id description
K06248 CHAD; chondroadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259336.3 True 1908 mRNA 0.45 4 7097042 7104020

Neighbor

gene id symbol gene type direction distance location
faap100 NA coding downstream 21201 7069209 ~ 7075841 (-)
sec24c sec24c coding downstream 76273 7002140 ~ 7020769 (-)
LOC103032713 camk2g1,camk2g,LOC108410509,LOC108273829,LOC107561852,LOC107684098,LOC107690933 coding downstream 103941 6886709 ~ 6993101 (-)
LOC103031455 si:ch73-127m5.2,LOC108426537,LOC107749848,LOC107561855,LOC107684095,LOC108274350,LOC107601426 coding downstream 381303 6711314 ~ 6715739 (-)
LOC103045903 LOC108426443 coding downstream 385822 6705068 ~ 6711220 (-)
armc7 armc7,LOC107706878 coding upstream 9106 7113126 ~ 7115766 (-)
LOC103046826 grin2c,LOC108443561,LOC108273492,LOC107755516,LOC107702470,LOC107684146 coding upstream 68647 7172667 ~ 7229961 (-)
LOC103039554 LOC103039554,LOC108443562,LOC107702472,LOC107722231,LOC107581578,LOC107755515,LOC107566485,LOC107684050 coding upstream 144945 7248965 ~ 7265703 (-)
LOC103039244 if4ea,LOC108443564,LOC101071475,LOC107581637,LOC107684128 coding upstream 163917 7267937 ~ 7271599 (-)
LOC111192401 NA coding upstream 244726 7348746 ~ 7350459 (-)
G35099 NA non-coding downstream 19413 7077225 ~ 7077629 (-)
G35094 NA non-coding downstream 30336 7064525 ~ 7066706 (-)
G35078 NA non-coding downstream 56400 7036261 ~ 7040642 (-)
G35077 kctd2,LOC106589267,LOC107706864,LOC108410512 non-coding downstream 61224 7034730 ~ 7035818 (-)
G35069 NA non-coding downstream 135049 6961173 ~ 6961993 (-)
G35135 NA non-coding upstream 18463 7122483 ~ 7123019 (-)
G35203 NA non-coding upstream 299149 7403169 ~ 7404536 (-)
G35266 NA non-coding upstream 945522 8049542 ~ 8051653 (-)
G35306 csnk1db,LOC103030301,LOC103369437,LOC108435268 non-coding upstream 1190810 8294830 ~ 8376030 (-)
G35310 NA non-coding upstream 1215200 8319220 ~ 8336288 (-)
LOC103030829 NA other downstream 400751 6688167 ~ 6696291 (-)
G34981 qki2,LOC103029551,LOC108426533 other downstream 443457 6619680 ~ 6653585 (-)
ndufaf8 NA other downstream 550460 6543144 ~ 6546582 (-)
G34953 NA other downstream 555678 6537021 ~ 6541364 (-)
LOC103026268 bahcc1 other downstream 583341 6366684 ~ 6513701 (-)
G35429 NA other upstream 1820808 8924828 ~ 8927717 (-)
tbata NA other upstream 1834913 8938933 ~ 9003896 (-)
G35512 NA other upstream 2100550 9204570 ~ 9205911 (-)
rpl38 NA other upstream 2322055 9426075 ~ 9431228 (-)
clrn3 NA other upstream 3949639 11053659 ~ 11083182 (-)

Expression


Co-expression Network